Wall clock time and date at job start Tue Mar 31 2020 12:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 115.54866 * 2 1 4 4 C 1.52999 * 117.49811 * 145.66376 * 2 1 3 5 5 N 1.46502 * 117.49895 * 214.98467 * 4 2 1 6 6 C 1.34768 * 120.00166 * 155.08894 * 5 4 2 7 7 O 1.21591 * 120.00361 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00445 * 179.97438 * 6 5 4 9 9 C 1.39943 * 120.00484 * 174.72950 * 8 6 5 10 10 C 1.38955 * 120.03478 * 326.34751 * 9 8 6 11 11 C 1.38155 * 120.06838 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.13876 * 359.70055 * 11 10 9 13 13 C 1.38912 * 120.06629 * 0.55355 * 12 11 10 14 14 O 1.35747 * 120.03448 * 179.74558 * 13 12 11 15 15 C 1.34825 * 116.99973 * 173.82546 * 14 13 12 16 16 H 1.07996 * 120.00187 * 354.59146 * 15 14 13 17 17 C 1.38657 * 119.99760 * 174.59112 * 15 14 13 18 18 N 1.31562 * 120.00184 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46676 * 90.00256 * 19 17 15 21 21 H 1.48495 * 109.46941 * 209.99883 * 19 17 15 22 22 H 1.48497 * 109.47305 * 330.00466 * 19 17 15 23 23 C 1.38708 * 120.03573 * 146.36795 * 9 8 6 24 24 C 1.53002 * 60.03071 * 107.48293 * 4 2 1 25 25 C 1.52996 * 117.50046 * 107.50300 * 24 4 2 26 26 C 1.53003 * 117.49471 * 252.52162 * 24 4 2 27 27 H 1.08996 * 109.47178 * 325.72647 * 1 2 3 28 28 H 1.08998 * 109.46623 * 85.72756 * 1 2 3 29 29 H 1.08997 * 109.47278 * 205.72271 * 1 2 3 30 30 H 1.08998 * 109.47196 * 154.27745 * 3 2 1 31 31 H 1.09007 * 109.46593 * 274.27772 * 3 2 1 32 32 H 1.08993 * 109.47134 * 34.27326 * 3 2 1 33 33 H 1.08998 * 117.49990 * 359.97438 * 4 2 1 34 34 H 0.97003 * 119.99930 * 335.08254 * 5 4 2 35 35 H 0.97006 * 119.99843 * 354.73322 * 8 6 5 36 36 H 1.07998 * 119.96551 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.93284 * 180.02562 * 11 10 9 38 38 H 1.07993 * 119.96695 * 180.30197 * 12 11 10 39 39 H 0.97001 * 120.00059 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07020 * 0.02562 * 23 9 8 41 41 H 1.09000 * 109.46802 * 111.38843 * 25 24 4 42 42 H 1.09000 * 109.47158 * 231.39084 * 25 24 4 43 43 H 1.09004 * 109.47241 * 351.39003 * 25 24 4 44 44 H 1.08997 * 109.47271 * 8.60923 * 26 24 4 45 45 H 1.09007 * 109.46857 * 128.61062 * 26 24 4 46 46 H 1.08999 * 109.47065 * 248.60905 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1206 0.7655 5 7 3.4932 -0.7899 1.4419 6 6 3.8996 -1.5165 2.5017 7 8 3.2230 -2.4464 2.8968 8 7 5.0559 -1.2127 3.1237 9 6 5.4239 -1.8945 4.2891 10 6 4.4490 -2.3192 5.1836 11 6 4.8116 -2.9919 6.3345 12 6 6.1434 -3.2500 6.5970 13 6 7.1230 -2.8234 5.7093 14 8 8.4316 -3.0728 5.9703 15 6 9.3202 -2.7469 5.0101 16 1 8.9731 -2.3902 4.0517 17 6 10.6798 -2.8697 5.2532 18 7 11.1027 -3.3048 6.4206 19 14 11.9110 -2.4189 3.9226 20 1 12.2708 -0.9835 4.0471 21 1 13.1318 -3.2503 4.0756 22 1 11.3090 -2.6643 2.5875 23 6 6.7621 -2.1467 4.5527 24 6 2.2368 -1.1221 -0.7645 25 6 3.5495 -0.7781 -1.4711 26 6 1.3590 -2.1578 -1.4701 27 1 -0.3633 0.8492 0.5787 28 1 -0.3632 0.0766 -1.0248 29 1 -0.3634 -0.9258 0.4460 30 1 3.1819 1.3090 0.4460 31 1 2.2774 1.7412 -1.0249 32 1 1.5804 2.0745 0.5787 33 1 1.6112 -1.8577 1.2695 34 1 4.0329 -0.0480 1.1269 35 1 5.6332 -0.5213 2.7635 36 1 3.4069 -2.1232 4.9789 37 1 4.0521 -3.3213 7.0281 38 1 6.4233 -3.7803 7.4951 39 1 12.0538 -3.3910 6.5905 40 1 7.5217 -1.8170 3.8594 41 1 3.9369 -1.6662 -1.9703 42 1 3.3710 0.0045 -2.2084 43 1 4.2758 -0.4276 -0.7377 44 1 0.7296 -2.6611 -0.7362 45 1 0.7297 -1.6590 -2.2073 46 1 1.9922 -2.8910 -1.9695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752638421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:49 Heat of formation + Delta-G solvation = -26.746023 kcal Electronic energy + Delta-G solvation = -26298.646577 eV Core-core repulsion = 22575.141152 eV Total energy + Delta-G solvation = -3723.505426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89201 -40.81672 -39.98487 -38.11592 -35.67632 -34.64083 -34.16414 -32.09022 -30.96953 -30.16405 -29.52677 -27.89338 -27.24753 -27.16674 -24.00912 -23.49201 -21.94935 -21.21033 -20.17411 -19.44620 -19.01980 -18.72332 -17.47722 -16.91137 -16.67049 -16.39386 -16.10665 -15.82750 -15.74300 -15.52367 -15.43239 -14.88663 -14.55195 -14.44651 -14.15280 -13.64691 -13.56651 -13.42458 -13.40228 -13.28120 -13.15158 -12.98111 -12.76110 -12.69616 -12.68585 -12.47074 -12.40960 -12.11102 -11.75446 -11.70032 -11.56185 -11.31342 -11.16762 -10.72294 -10.35442 -9.65631 -9.30174 -8.83591 -8.45753 -6.14406 0.44555 0.71193 1.36052 1.42683 1.46083 1.53642 1.93753 2.18465 2.75161 2.86257 3.00616 3.18653 3.50315 3.61460 3.73238 3.77419 4.11508 4.14548 4.17145 4.33535 4.44885 4.55271 4.59434 4.65659 4.73309 4.74834 4.85525 4.90607 4.94519 4.95529 5.01668 5.03362 5.07587 5.11637 5.16118 5.19234 5.24971 5.33739 5.39128 5.46859 5.50667 5.51410 5.68022 5.69317 5.92614 6.02534 6.20568 6.87794 6.98660 7.40392 7.78500 8.77352 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002839 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.409455 B = 9859.795466 C =11032.050846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.117 4.117 4 C 0.087 3.913 5 N -0.694 5.694 6 C 0.705 3.295 7 O -0.608 6.608 8 N -0.673 5.673 9 C 0.206 3.794 10 C -0.199 4.199 11 C -0.051 4.051 12 C -0.215 4.215 13 C 0.136 3.864 14 O -0.226 6.226 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.018 2.982 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.260 4.260 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.113 4.113 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.410 0.590 35 H 0.419 0.581 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 10.956 -17.947 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.115 4.115 3 C -0.174 4.174 4 C -0.019 4.019 5 N -0.349 5.349 6 C 0.406 3.594 7 O -0.487 6.487 8 N -0.321 5.321 9 C 0.111 3.889 10 C -0.220 4.220 11 C -0.069 4.069 12 C -0.235 4.235 13 C 0.084 3.916 14 O -0.132 6.132 15 C -0.488 4.488 16 H 0.119 0.881 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.837 3.163 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.177 1.177 23 C -0.282 4.282 24 C -0.132 4.132 25 C -0.172 4.172 26 C -0.170 4.170 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.249 0.751 35 H 0.256 0.744 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.115 10.022 -17.335 27.682 hybrid contribution 1.413 0.463 -0.352 1.528 sum -17.702 10.486 -17.686 27.131 Atomic orbital electron populations 1.21356 0.90676 1.02254 1.02817 1.22329 0.95890 0.91703 1.01557 1.21336 0.99884 0.93217 1.02934 1.22014 0.86688 1.02097 0.91141 1.44377 1.24638 1.34834 1.31050 1.15943 0.81004 0.82122 0.80298 1.90914 1.57000 1.32382 1.68367 1.42412 1.22453 1.41047 1.26200 1.17168 0.91812 0.94257 0.85651 1.20850 0.98923 1.07003 0.95247 1.20905 0.94320 0.95413 0.96264 1.20474 0.92087 1.09221 1.01705 1.19576 0.85274 0.92947 0.93759 1.83984 1.12276 1.74102 1.42829 1.21781 0.86493 1.46427 0.94141 0.88124 1.26583 0.98633 0.96316 1.00423 1.70187 1.16170 1.44992 1.24427 0.84594 0.76257 0.78756 0.76648 1.18537 1.19821 1.17730 1.20788 0.95366 1.10504 1.01572 1.22381 0.98702 0.99663 0.92412 1.21291 0.93880 1.02055 0.99980 1.21332 0.98685 0.96942 1.00072 0.91512 0.90602 0.92717 0.92715 0.90560 0.91340 0.86728 0.75069 0.74374 0.85382 0.82871 0.86208 0.91829 0.85291 0.92376 0.90499 0.92754 0.92731 0.90482 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.88 71.98 0.64 -0.64 16 2 C -0.11 -1.51 2.70 -52.16 -0.14 -1.65 16 3 C -0.12 -1.20 8.82 71.98 0.64 -0.57 16 4 C 0.09 1.70 5.67 44.99 0.26 1.96 16 5 N -0.69 -14.35 4.62 -457.82 -2.11 -16.47 16 6 C 0.71 20.99 8.30 179.06 1.49 22.48 16 7 O -0.61 -23.09 13.61 -4.00 -0.05 -23.15 16 8 N -0.67 -19.85 5.35 -317.24 -1.70 -21.55 16 9 C 0.21 7.88 6.27 38.13 0.24 8.12 16 10 C -0.20 -7.57 8.65 22.42 0.19 -7.37 16 11 C -0.05 -1.88 10.03 22.24 0.22 -1.65 16 12 C -0.21 -9.48 9.99 22.42 0.22 -9.26 16 13 C 0.14 6.85 6.64 22.56 0.15 7.00 16 14 O -0.23 -13.54 9.76 -22.66 -0.22 -13.76 16 15 C -0.41 -23.73 9.44 67.92 0.64 -23.09 16 16 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 17 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 18 N -0.92 -56.13 13.67 21.61 0.30 -55.83 16 19 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 C -0.26 -11.48 9.04 22.51 0.20 -11.28 16 24 C -0.13 -1.91 2.70 -52.16 -0.14 -2.05 16 25 C -0.11 -1.49 8.83 71.98 0.64 -0.86 16 26 C -0.11 -1.51 8.88 71.98 0.64 -0.87 16 27 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 28 H 0.08 0.66 8.02 -2.39 -0.02 0.64 16 29 H 0.05 0.69 7.78 -2.39 -0.02 0.67 16 30 H 0.05 0.55 5.63 -2.39 -0.01 0.54 16 31 H 0.08 0.62 8.03 -2.38 -0.02 0.60 16 32 H 0.07 0.67 7.92 -2.39 -0.02 0.65 16 33 H 0.11 2.82 7.21 -2.39 -0.02 2.80 16 34 H 0.41 6.10 5.44 -92.71 -0.50 5.59 16 35 H 0.42 9.35 8.83 -92.70 -0.82 8.53 16 36 H 0.13 4.75 6.43 -2.91 -0.02 4.73 16 37 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.13 5.57 5.72 -2.91 -0.02 5.55 16 41 H 0.06 0.82 7.92 -2.39 -0.02 0.80 16 42 H 0.08 0.76 8.03 -2.39 -0.02 0.74 16 43 H 0.05 0.70 5.99 -2.39 -0.01 0.69 16 44 H 0.05 0.79 7.78 -2.39 -0.02 0.77 16 45 H 0.08 0.78 8.02 -2.38 -0.02 0.76 16 46 H 0.06 0.81 7.92 -2.39 -0.02 0.79 16 Total: -1.00 -75.30 372.53 4.28 -71.02 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.31 Total: 36.10 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 6.35 Total: -20.50 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -3.51 Total: -93.85 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.28 Total: -36.91 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -75.30 4.28 -71.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752638421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.272 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds