Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46954 * 239.99990 * 3 2 1 5 5 H 1.48493 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 120.00062 * 3 2 1 7 7 C 1.37873 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46801 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47083 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.47265 * 180.02562 * 11 10 9 13 13 C 1.34756 * 117.00280 * 180.02562 * 12 11 10 14 14 O 1.21532 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.47285 * 120.00510 * 180.02562 * 13 12 11 16 16 C 1.40048 * 120.61371 * 354.61865 * 15 13 12 17 17 C 1.38301 * 118.36176 * 180.26783 * 16 15 13 18 18 C 1.38393 * 119.51896 * 359.72892 * 17 16 15 19 19 N 1.31846 * 121.23069 * 0.02562 * 18 17 16 20 20 C 1.32423 * 121.77988 * 359.97438 * 19 18 17 21 21 N 1.38227 * 119.83077 * 180.02562 * 20 19 18 22 22 C 1.46843 * 110.99891 * 324.06535 * 21 20 19 23 23 C 1.53036 * 109.52442 * 185.83959 * 22 21 20 24 24 C 1.53116 * 109.28014 * 300.82248 * 23 22 21 25 25 C 1.53126 * 109.21343 * 57.62035 * 24 23 22 26 26 C 1.46843 * 111.00140 * 88.27939 * 21 20 19 27 27 H 0.97004 * 120.00014 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47031 * 60.01030 * 9 7 2 29 29 H 1.09001 * 109.47605 * 300.00368 * 9 7 2 30 30 H 1.09005 * 109.47415 * 60.00774 * 10 9 7 31 31 H 1.08998 * 109.47840 * 300.00072 * 10 9 7 32 32 H 1.08997 * 109.47040 * 60.00671 * 11 10 9 33 33 H 1.09001 * 109.47314 * 300.00182 * 11 10 9 34 34 H 1.08004 * 120.81402 * 0.02562 * 16 15 13 35 35 H 1.08004 * 120.23850 * 179.71614 * 17 16 15 36 36 H 1.07997 * 119.38640 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46278 * 65.82236 * 22 21 20 38 38 H 1.09000 * 109.45408 * 305.85040 * 22 21 20 39 39 H 1.09001 * 109.50764 * 180.87619 * 23 22 21 40 40 H 1.09000 * 109.50286 * 60.76036 * 23 22 21 41 41 H 1.09002 * 109.52784 * 177.55881 * 24 23 22 42 42 H 1.08994 * 109.52219 * 297.68455 * 24 23 22 43 43 H 1.08998 * 109.50302 * 62.32094 * 25 24 23 44 44 H 1.08995 * 109.50158 * 182.43821 * 25 24 23 45 45 H 1.09007 * 109.45816 * 294.17339 * 26 21 20 46 46 H 1.08997 * 109.46367 * 54.15018 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6619 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4238 -6.0907 -0.0006 13 6 1.9088 -7.3359 -0.0016 14 8 0.7040 -7.4952 -0.0034 15 6 2.8060 -8.5040 -0.0005 16 6 4.1923 -8.3387 -0.1114 17 6 4.9907 -9.4679 -0.1110 18 6 4.4055 -10.7168 0.0035 19 7 3.0985 -10.8519 0.1120 20 6 2.2872 -9.8053 0.1171 21 7 0.9227 -9.9935 0.2335 22 6 0.4967 -11.2074 -0.4745 23 6 -1.0303 -11.3056 -0.4482 24 6 -1.5094 -11.3454 1.0055 25 6 -1.0114 -10.0943 1.7346 26 6 0.5150 -10.0305 1.6437 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0446 -0.8914 33 1 0.8533 -5.0451 0.8886 34 1 4.6267 -7.3537 -0.1991 35 1 6.0632 -9.3758 -0.1996 36 1 5.0310 -11.5971 0.0040 37 1 0.9253 -12.0822 0.0143 38 1 0.8401 -11.1643 -1.5081 39 1 -1.3454 -12.2147 -0.9603 40 1 -1.4594 -10.4378 -0.9491 41 1 -2.5988 -11.3716 1.0295 42 1 -1.1128 -12.2346 1.4955 43 1 -1.4402 -9.2069 1.2691 44 1 -1.3131 -10.1387 2.7811 45 1 0.9435 -10.9109 2.1226 46 1 0.8715 -9.1327 2.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767285672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = -52.740261 kcal Electronic energy + Delta-G solvation = -26463.489623 eV Core-core repulsion = 22738.857003 eV Total energy + Delta-G solvation = -3724.632620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22859 -39.58961 -38.56474 -36.22664 -34.15607 -33.91511 -32.91896 -31.62614 -31.02837 -30.19786 -27.16821 -25.23256 -24.88572 -23.45061 -23.04663 -22.28701 -20.95010 -20.30944 -19.85622 -17.95599 -17.52651 -16.97808 -16.44366 -16.21096 -15.82172 -15.46531 -15.24714 -14.73891 -14.47116 -14.25457 -14.04950 -13.94937 -13.74586 -13.33932 -13.25002 -13.11860 -12.58161 -12.40571 -12.14763 -12.04123 -11.81759 -11.36641 -10.95394 -10.94023 -10.72758 -10.67920 -10.66111 -10.61312 -10.31856 -10.29601 -10.21339 -10.04929 -9.69213 -9.54213 -9.42157 -9.16675 -8.49997 -8.37893 -6.02794 -4.05929 0.34684 0.87134 2.66771 2.87346 3.28962 3.32566 3.36992 3.39433 3.53653 4.12886 4.43731 4.54272 4.57798 4.62885 4.69755 4.72105 4.83272 4.95042 5.06267 5.19751 5.27601 5.31670 5.33044 5.43778 5.49587 5.62290 5.63525 5.66837 5.68448 5.71382 5.76544 5.78493 5.96477 6.01706 6.05143 6.11751 6.26736 6.53447 6.56126 6.67792 6.88854 7.00197 7.03557 7.52720 7.61133 7.72746 7.95422 8.07622 8.36828 9.00151 9.58241 11.08604 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.633202 B =10680.065546 C =12014.356488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.072 3.928 12 O -0.361 6.361 13 C 0.499 3.501 14 O -0.469 6.469 15 C -0.157 4.157 16 C -0.011 4.011 17 C -0.198 4.198 18 C 0.142 3.858 19 N -0.523 5.523 20 C 0.357 3.643 21 N -0.466 5.466 22 C 0.064 3.936 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.116 4.116 26 C 0.075 3.925 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -26.496 1.321 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C 0.000 4.000 12 O -0.278 6.278 13 C 0.341 3.659 14 O -0.355 6.355 15 C -0.162 4.162 16 C -0.037 4.037 17 C -0.218 4.218 18 C -0.017 4.017 19 N -0.236 5.236 20 C 0.127 3.873 21 N -0.187 5.187 22 C -0.063 4.063 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.051 4.051 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.144 -26.815 1.193 27.160 hybrid contribution 1.160 1.205 0.164 1.681 sum 5.304 -25.610 1.357 26.189 Atomic orbital electron populations 1.69955 1.06080 1.26865 1.50451 1.25025 0.94872 0.99328 0.95206 0.86613 0.79543 0.82935 0.78653 1.20187 1.21261 1.20189 1.21138 0.93069 0.90722 1.51120 0.92508 1.19040 0.93833 0.90702 0.97679 1.21761 0.99933 0.91078 1.01849 1.23460 0.91134 0.83323 1.02130 1.86524 1.42535 1.14856 1.83923 1.20556 0.87269 0.83249 0.74834 1.90892 1.15116 1.86401 1.43113 1.19934 0.93815 0.91912 1.10556 1.22013 0.91624 1.00645 0.89457 1.22109 1.01855 0.93041 1.04788 1.22828 0.90294 0.97424 0.91127 1.67944 1.05719 1.33787 1.16123 1.19783 0.89642 0.87546 0.90360 1.59488 1.06465 1.38467 1.14274 1.22033 0.95766 0.89993 0.98460 1.21611 0.94512 1.02365 0.97085 1.21578 1.00680 0.97807 0.95723 1.21587 0.93911 0.99399 1.00504 1.22014 0.96932 1.00822 0.85315 0.92832 0.96225 0.96247 0.92225 0.92214 0.91514 0.91575 0.82786 0.83830 0.82231 0.93010 0.91025 0.91364 0.90697 0.91614 0.92372 0.90028 0.91248 0.94156 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.25 5.53 -26.73 -0.15 -2.40 16 11 C 0.07 1.35 5.48 37.16 0.20 1.55 16 12 O -0.36 -6.10 9.56 -40.64 -0.39 -6.49 16 13 C 0.50 8.10 7.88 34.41 0.27 8.37 16 14 O -0.47 -8.50 14.50 -19.29 -0.28 -8.78 16 15 C -0.16 -2.10 5.91 -104.66 -0.62 -2.72 16 16 C -0.01 -0.12 9.73 -38.88 -0.38 -0.50 16 17 C -0.20 -1.56 10.08 -39.50 -0.40 -1.96 16 18 C 0.14 1.20 11.16 -17.49 -0.20 1.00 16 19 N -0.52 -5.91 9.21 -12.19 -0.11 -6.03 16 20 C 0.36 4.62 5.57 -155.20 -0.86 3.76 16 21 N -0.47 -6.02 2.76 -173.01 -0.48 -6.49 16 22 C 0.06 0.71 4.91 -3.84 -0.02 0.69 16 23 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 24 C -0.12 -1.06 6.00 -26.61 -0.16 -1.22 16 25 C -0.12 -1.20 6.10 -26.64 -0.16 -1.36 16 26 C 0.07 0.87 4.96 -3.83 -0.02 0.86 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.15 1.46 7.71 -52.48 -0.40 1.05 16 35 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.05 0.56 7.79 -51.93 -0.40 0.15 16 38 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -32.15 378.80 -10.57 -42.72 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.53 Total: -2.84 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.20 Total: -8.21 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.15 Total: -38.64 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.67 Total: -15.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.15 -10.57 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767285672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.020 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds