Wall clock time and date at job start Tue Mar 31 2020 11:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46954 * 239.99990 * 3 2 1 5 5 H 1.48493 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 120.00062 * 3 2 1 7 7 C 1.37873 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46801 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47083 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.47265 * 180.02562 * 11 10 9 13 13 C 1.34756 * 117.00280 * 180.02562 * 12 11 10 14 14 O 1.21532 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.47285 * 120.00510 * 180.02562 * 13 12 11 16 16 C 1.40048 * 120.61371 * 354.61865 * 15 13 12 17 17 C 1.38301 * 118.36176 * 180.26783 * 16 15 13 18 18 C 1.38393 * 119.51896 * 359.72892 * 17 16 15 19 19 N 1.31846 * 121.23069 * 0.02562 * 18 17 16 20 20 C 1.32423 * 121.77988 * 359.97438 * 19 18 17 21 21 N 1.38227 * 119.83077 * 180.02562 * 20 19 18 22 22 C 1.46843 * 110.99891 * 324.06535 * 21 20 19 23 23 C 1.53036 * 109.52442 * 185.83959 * 22 21 20 24 24 C 1.53116 * 109.28014 * 300.82248 * 23 22 21 25 25 C 1.53126 * 109.21343 * 57.62035 * 24 23 22 26 26 C 1.46843 * 111.00140 * 88.27939 * 21 20 19 27 27 H 0.97004 * 120.00014 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47031 * 60.01030 * 9 7 2 29 29 H 1.09001 * 109.47605 * 300.00368 * 9 7 2 30 30 H 1.09005 * 109.47415 * 60.00774 * 10 9 7 31 31 H 1.08998 * 109.47840 * 300.00072 * 10 9 7 32 32 H 1.08997 * 109.47040 * 60.00671 * 11 10 9 33 33 H 1.09001 * 109.47314 * 300.00182 * 11 10 9 34 34 H 1.08004 * 120.81402 * 0.02562 * 16 15 13 35 35 H 1.08004 * 120.23850 * 179.71614 * 17 16 15 36 36 H 1.07997 * 119.38640 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46278 * 65.82236 * 22 21 20 38 38 H 1.09000 * 109.45408 * 305.85040 * 22 21 20 39 39 H 1.09001 * 109.50764 * 180.87619 * 23 22 21 40 40 H 1.09000 * 109.50286 * 60.76036 * 23 22 21 41 41 H 1.09002 * 109.52784 * 177.55881 * 24 23 22 42 42 H 1.08994 * 109.52219 * 297.68455 * 24 23 22 43 43 H 1.08998 * 109.50302 * 62.32094 * 25 24 23 44 44 H 1.08995 * 109.50158 * 182.43821 * 25 24 23 45 45 H 1.09007 * 109.45816 * 294.17339 * 26 21 20 46 46 H 1.08997 * 109.46367 * 54.15018 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6619 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4238 -6.0907 -0.0006 13 6 1.9088 -7.3359 -0.0016 14 8 0.7040 -7.4952 -0.0034 15 6 2.8060 -8.5040 -0.0005 16 6 4.1923 -8.3387 -0.1114 17 6 4.9907 -9.4679 -0.1110 18 6 4.4055 -10.7168 0.0035 19 7 3.0985 -10.8519 0.1120 20 6 2.2872 -9.8053 0.1171 21 7 0.9227 -9.9935 0.2335 22 6 0.4967 -11.2074 -0.4745 23 6 -1.0303 -11.3056 -0.4482 24 6 -1.5094 -11.3454 1.0055 25 6 -1.0114 -10.0943 1.7346 26 6 0.5150 -10.0305 1.6437 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0446 -0.8914 33 1 0.8533 -5.0451 0.8886 34 1 4.6267 -7.3537 -0.1991 35 1 6.0632 -9.3758 -0.1996 36 1 5.0310 -11.5971 0.0040 37 1 0.9253 -12.0822 0.0143 38 1 0.8401 -11.1643 -1.5081 39 1 -1.3454 -12.2147 -0.9603 40 1 -1.4594 -10.4378 -0.9491 41 1 -2.5988 -11.3716 1.0295 42 1 -1.1128 -12.2346 1.4955 43 1 -1.4402 -9.2069 1.2691 44 1 -1.3131 -10.1387 2.7811 45 1 0.9435 -10.9109 2.1226 46 1 0.8715 -9.1327 2.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767285672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:43 Heat of formation + Delta-G solvation = -69.143907 kcal Electronic energy + Delta-G solvation = -26464.200939 eV Core-core repulsion = 22738.857003 eV Total energy + Delta-G solvation = -3725.343936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.16138 -40.83256 -39.38112 -37.63842 -35.92334 -34.88718 -33.97778 -33.43810 -31.87602 -31.03496 -29.02592 -26.34408 -25.74251 -24.97553 -24.06929 -23.21630 -22.16451 -22.06815 -20.68006 -18.98590 -18.68109 -18.40499 -17.88980 -17.61892 -17.07187 -16.48540 -16.35425 -16.06158 -15.59857 -15.51386 -15.07792 -14.97912 -14.62328 -14.47831 -14.15083 -14.11431 -13.93975 -13.77874 -13.71121 -13.34693 -13.23820 -12.78966 -12.52742 -12.38422 -12.22939 -12.02942 -11.76923 -11.70564 -11.53035 -11.47156 -11.39844 -11.38221 -11.24899 -11.04485 -10.85143 -10.56619 -10.29848 -9.36564 -8.21352 -6.33217 -0.53691 0.09190 1.41360 1.44965 1.52397 1.54940 1.59793 2.41632 2.44185 2.67714 3.12400 3.35817 3.64615 3.76708 3.81901 3.87811 3.94594 4.01053 4.01921 4.08903 4.17345 4.22286 4.33432 4.38833 4.45273 4.48450 4.59475 4.75716 4.79895 4.80264 4.85829 4.90456 4.96529 5.03686 5.06448 5.08176 5.18303 5.22714 5.39031 5.40604 5.48067 5.52783 5.63924 5.80143 5.83178 6.16809 6.19194 6.72474 6.78758 6.83259 7.36322 8.90750 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.633202 B =10680.065546 C =12014.356488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.084 3.916 12 O -0.357 6.357 13 C 0.498 3.502 14 O -0.498 6.498 15 C -0.187 4.187 16 C -0.015 4.015 17 C -0.180 4.180 18 C 0.148 3.852 19 N -0.535 5.535 20 C 0.345 3.655 21 N -0.488 5.488 22 C 0.068 3.932 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.114 4.114 26 C 0.079 3.921 27 H 0.265 0.735 28 H -0.005 1.005 29 H -0.004 1.004 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.201 0.799 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -28.004 1.431 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.010 4.010 10 C -0.129 4.129 11 C 0.010 3.990 12 O -0.275 6.275 13 C 0.341 3.659 14 O -0.386 6.386 15 C -0.193 4.193 16 C -0.041 4.041 17 C -0.200 4.200 18 C -0.010 4.010 19 N -0.248 5.248 20 C 0.115 3.885 21 N -0.209 5.209 22 C -0.058 4.058 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.047 4.047 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.202 0.798 36 H 0.218 0.782 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.863 -28.343 1.302 29.191 hybrid contribution 0.396 1.563 0.122 1.617 sum 7.259 -26.780 1.424 27.783 Atomic orbital electron populations 1.70100 1.07926 1.28001 1.51396 1.26021 0.95782 1.03553 0.94572 0.85441 0.78203 0.77733 0.79328 1.18997 1.20966 1.18968 1.21600 0.93778 0.91834 1.50978 0.91566 1.18921 0.94255 0.92506 0.95367 1.21448 0.98703 0.90230 1.02563 1.23075 0.90894 0.83462 1.01569 1.86501 1.41735 1.14995 1.84235 1.21168 0.87600 0.83363 0.73724 1.90874 1.16462 1.86550 1.44689 1.19896 0.94771 0.90713 1.13898 1.22224 0.90509 1.02201 0.89119 1.22521 1.03504 0.91669 1.02297 1.23608 0.89584 0.99248 0.88589 1.68018 1.07036 1.32974 1.16812 1.19847 0.89962 0.87766 0.90882 1.59456 1.07149 1.39511 1.14779 1.22025 0.96575 0.89498 0.97712 1.21613 0.93514 1.02466 0.97730 1.21556 1.01396 0.97286 0.94965 1.21578 0.93014 0.99181 1.01459 1.21961 0.97670 1.00044 0.84981 0.92678 0.98621 0.98587 0.91392 0.91407 0.92236 0.92156 0.82059 0.79801 0.78212 0.92506 0.91958 0.89159 0.92774 0.90433 0.90935 0.92772 0.89716 0.93314 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.70 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.86 5.53 30.59 0.17 -3.69 16 11 C 0.08 3.22 5.48 71.98 0.39 3.61 16 12 O -0.36 -12.32 9.56 -56.67 -0.54 -12.86 16 13 C 0.50 16.77 7.88 70.20 0.55 17.33 16 14 O -0.50 -19.19 14.50 19.73 0.29 -18.90 16 15 C -0.19 -5.04 5.91 -19.89 -0.12 -5.15 16 16 C -0.01 -0.28 9.73 22.72 0.22 -0.06 16 17 C -0.18 -2.19 10.08 22.32 0.23 -1.96 16 18 C 0.15 1.97 11.16 84.73 0.95 2.92 16 19 N -0.53 -11.18 9.21 -192.49 -1.77 -12.95 16 20 C 0.34 8.90 5.57 133.68 0.74 9.65 16 21 N -0.49 -12.93 2.76 -701.27 -1.93 -14.87 16 22 C 0.07 1.50 4.91 86.33 0.42 1.92 16 23 C -0.12 -2.16 6.09 30.64 0.19 -1.97 16 24 C -0.11 -1.92 6.00 30.68 0.18 -1.74 16 25 C -0.11 -2.43 6.10 30.65 0.19 -2.24 16 26 C 0.08 1.91 4.96 86.33 0.43 2.33 16 27 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.16 2.78 7.71 -2.91 -0.02 2.76 16 35 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.06 1.16 7.79 -2.39 -0.02 1.14 16 38 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -72.03 378.80 4.69 -67.34 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.95 Total: 10.96 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.39 Total: -7.80 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.42 Total: -84.84 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.26 Total: -31.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.03 4.69 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767285672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.805 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds