Wall clock time and date at job start Tue Mar 31 2020 12:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 112.85031 * 2 1 4 4 C 1.53779 * 113.61504 * 131.20079 * 2 1 3 5 5 C 1.53775 * 87.08370 * 89.11320 * 4 2 1 6 6 C 1.53001 * 113.61165 * 139.98378 * 5 4 2 7 7 N 1.46507 * 109.47075 * 176.52650 * 6 5 4 8 8 C 1.34774 * 120.00070 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00106 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.39941 * 119.99923 * 175.49983 * 10 8 7 12 12 C 1.38963 * 120.03597 * 214.85529 * 11 10 8 13 13 C 1.38152 * 120.06913 * 179.74603 * 12 11 10 14 14 C 1.38164 * 120.13911 * 0.55023 * 13 12 11 15 15 C 1.38911 * 120.07028 * 359.70075 * 14 13 12 16 16 O 1.35743 * 120.03872 * 179.97438 * 15 14 13 17 17 C 1.34837 * 116.99987 * 5.36712 * 16 15 14 18 18 H 1.07996 * 119.99550 * 354.96506 * 17 16 15 19 19 C 1.38650 * 119.99907 * 174.96147 * 17 16 15 20 20 N 1.31554 * 120.00378 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46831 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46994 * 119.99781 * 21 19 17 24 24 H 1.48492 * 109.47045 * 240.00325 * 21 19 17 25 25 C 1.38705 * 120.03679 * 35.12696 * 11 10 8 26 26 C 1.53775 * 87.17514 * 25.39228 * 5 4 2 27 27 H 1.08998 * 109.47636 * 288.80316 * 1 2 3 28 28 H 1.09004 * 109.47036 * 48.80269 * 1 2 3 29 29 H 1.09002 * 109.47646 * 168.80093 * 1 2 3 30 30 H 1.09010 * 109.47166 * 191.19489 * 3 2 1 31 31 H 1.09000 * 109.47419 * 311.19466 * 3 2 1 32 32 H 1.09001 * 109.47289 * 71.19696 * 3 2 1 33 33 H 1.09007 * 113.61225 * 334.56285 * 4 2 1 34 34 H 1.09002 * 113.61452 * 203.66872 * 4 2 1 35 35 H 1.09005 * 113.61800 * 270.80036 * 5 4 2 36 36 H 1.09000 * 109.47039 * 296.52436 * 6 5 4 37 37 H 1.08998 * 109.47362 * 56.52917 * 6 5 4 38 38 H 0.97003 * 119.99675 * 0.02562 * 7 6 5 39 39 H 0.97004 * 119.99989 * 355.50056 * 10 8 7 40 40 H 1.08007 * 119.96425 * 359.97438 * 12 11 10 41 41 H 1.08002 * 119.93352 * 180.27978 * 13 12 11 42 42 H 1.07997 * 119.97093 * 179.72831 * 14 13 12 43 43 H 0.97001 * 120.00066 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.06631 * 359.95654 * 25 11 10 45 45 H 1.09002 * 113.61673 * 89.15543 * 26 5 4 46 46 H 1.08998 * 113.61465 * 220.05901 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0928 -2.0425 0.0019 6 6 3.3263 -2.9478 0.0028 7 7 3.1449 -4.0213 -0.9776 8 6 4.1108 -4.9449 -1.1520 9 8 5.1326 -4.8875 -0.4954 10 7 3.9441 -5.9322 -2.0542 11 6 4.9836 -6.8354 -2.3032 12 6 5.1756 -7.3392 -3.5840 13 6 6.2048 -8.2268 -3.8316 14 6 7.0394 -8.6252 -2.8051 15 6 6.8496 -8.1293 -1.5215 16 8 7.6696 -8.5215 -0.5134 17 6 8.7150 -9.3060 -0.8447 18 1 8.8237 -9.6608 -1.8589 19 6 9.6505 -9.6569 0.1167 20 7 9.5178 -9.2250 1.3522 21 14 11.0992 -10.7431 -0.3425 22 1 11.0196 -11.0912 -1.7840 23 1 12.3666 -10.0155 -0.0789 24 1 11.0634 -11.9856 0.4699 25 6 5.8201 -7.2330 -1.2707 26 6 2.1447 -0.9318 -1.0603 27 1 -0.3634 0.3312 0.9728 28 1 -0.3633 0.6769 -0.7733 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1942 1.3532 -0.1995 31 1 1.6415 2.0076 -0.7733 32 1 1.9599 1.8733 0.9728 33 1 1.4944 -1.1068 1.9156 34 1 3.1590 -0.6486 1.3496 35 1 1.1573 -2.6019 0.0034 36 1 4.2073 -2.3618 -0.2590 37 1 3.4590 -3.3802 0.9945 38 1 2.3299 -4.0669 -1.5016 39 1 3.1036 -6.0166 -2.5311 40 1 4.5216 -7.0336 -4.3874 41 1 6.3548 -8.6135 -4.8288 42 1 7.8404 -9.3226 -3.0009 43 1 10.1725 -9.4702 2.0246 44 1 5.6707 -6.8457 -0.2736 45 1 3.1575 -0.6533 -1.3518 46 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780869513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:48 Heat of formation + Delta-G solvation = -15.656474 kcal Electronic energy + Delta-G solvation = -25615.097051 eV Core-core repulsion = 21892.072504 eV Total energy + Delta-G solvation = -3723.024547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.51575 -39.88605 -38.60421 -36.59941 -34.71978 -33.98289 -32.18167 -31.36059 -29.36907 -28.40989 -27.81386 -26.32614 -26.03926 -25.18995 -22.39457 -21.39467 -21.16694 -20.49498 -18.64817 -18.21164 -18.13565 -17.03602 -16.20634 -15.74412 -15.20885 -14.98062 -14.87900 -14.79185 -14.49649 -14.21765 -13.94052 -13.89313 -13.64573 -13.44809 -13.11277 -12.89734 -12.71393 -12.41119 -12.28011 -12.19786 -11.74706 -11.68670 -11.46284 -11.21938 -11.12758 -10.97861 -10.89643 -10.72166 -10.42069 -10.39088 -10.37084 -9.87232 -9.62846 -9.16388 -9.02112 -8.75785 -7.58665 -7.10669 -6.35802 -3.94827 2.17064 2.42171 2.76424 3.17470 3.19091 3.24837 3.43624 4.01787 4.08335 4.20003 4.28907 4.29309 4.50961 4.67614 4.79187 4.99408 5.05112 5.18885 5.25680 5.27130 5.38278 5.41888 5.46592 5.48466 5.53143 5.60642 5.67063 5.68790 5.71515 5.80107 5.86242 5.90549 6.07294 6.16543 6.18722 6.30490 6.42271 6.52744 6.62454 6.91743 7.10468 7.14444 7.32162 7.41937 7.56894 7.89718 8.09188 8.13168 8.77362 9.09217 9.81832 10.82346 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.002232 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.939687 B =12544.094129 C =13507.054725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.123 4.123 6 C 0.148 3.852 7 N -0.746 5.746 8 C 0.696 3.304 9 O -0.560 6.560 10 N -0.683 5.683 11 C 0.193 3.807 12 C -0.238 4.238 13 C -0.059 4.059 14 C -0.247 4.247 15 C 0.167 3.833 16 O -0.175 6.175 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.037 3.963 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.277 1.277 25 C -0.186 4.186 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.400 0.600 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.269 0.731 44 H 0.135 0.865 45 H 0.084 0.916 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 16.056 -5.889 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.194 4.194 4 C -0.159 4.159 5 C -0.141 4.141 6 C 0.024 3.976 7 N -0.402 5.402 8 C 0.397 3.603 9 O -0.435 6.435 10 N -0.330 5.330 11 C 0.099 3.901 12 C -0.259 4.259 13 C -0.078 4.078 14 C -0.267 4.267 15 C 0.112 3.888 16 O -0.078 6.078 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.167 4.167 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.208 4.208 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.226 0.774 39 H 0.235 0.765 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.103 0.897 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.582 16.193 -4.767 24.373 hybrid contribution -0.098 -0.606 -0.812 1.018 sum -17.680 15.587 -5.580 24.221 Atomic orbital electron populations 1.21595 0.93224 1.01865 1.01834 1.21816 0.95495 0.94620 0.97223 1.21732 1.00645 0.95350 1.01624 1.23030 1.01699 0.94855 0.96348 1.22762 0.98376 0.94834 0.98171 1.21213 0.97127 0.87101 0.92139 1.45084 1.20685 1.29703 1.44750 1.16004 0.83786 0.79581 0.80965 1.91027 1.27868 1.76059 1.48543 1.42466 1.16920 1.29853 1.43746 1.16951 0.89518 0.90815 0.92824 1.20238 1.03951 1.07559 0.94139 1.20474 0.93750 0.95840 0.97728 1.21168 1.04671 1.07634 0.93236 1.19150 0.90499 0.91225 0.87900 1.83994 1.34409 1.59375 1.29992 1.21392 1.00833 1.27026 0.97415 0.88962 1.25303 0.98432 0.98113 0.94816 1.70068 1.35332 1.42591 1.01628 0.85645 0.79977 0.78988 0.78767 1.19105 1.20199 1.20225 1.20205 0.98865 1.01804 0.99901 1.23215 1.01415 0.95425 0.96337 0.92391 0.92465 0.92424 0.92397 0.92730 0.92581 0.91141 0.89524 0.88711 0.91437 0.91412 0.77357 0.76523 0.87509 0.87107 0.85512 0.92143 0.84692 0.89722 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.07 37.15 0.34 -0.36 16 2 C -0.09 -0.57 1.39 -153.61 -0.21 -0.79 16 3 C -0.14 -0.83 9.20 37.15 0.34 -0.49 16 4 C -0.12 -0.83 6.79 -25.92 -0.18 -1.01 16 5 C -0.12 -0.88 3.40 -89.81 -0.31 -1.18 16 6 C 0.15 1.56 5.50 -4.04 -0.02 1.54 16 7 N -0.75 -8.32 5.56 -65.22 -0.36 -8.68 16 8 C 0.70 11.41 8.41 -86.92 -0.73 10.68 16 9 O -0.56 -12.27 13.78 5.29 0.07 -12.20 16 10 N -0.68 -10.31 5.34 -14.24 -0.08 -10.38 16 11 C 0.19 3.74 6.30 -83.71 -0.53 3.22 16 12 C -0.24 -4.19 9.96 -39.34 -0.39 -4.58 16 13 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 14 C -0.25 -5.60 9.17 -39.36 -0.36 -5.96 16 15 C 0.17 4.34 6.64 -39.13 -0.26 4.08 16 16 O -0.17 -5.29 9.76 0.05 0.00 -5.29 16 17 C -0.39 -11.35 9.49 30.88 0.29 -11.06 16 18 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -26.31 13.67 55.48 0.76 -25.55 16 21 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.19 -4.46 8.64 -39.21 -0.34 -4.80 16 26 C -0.13 -0.85 6.76 -25.83 -0.17 -1.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 7.34 -51.93 -0.38 -0.08 16 30 H 0.06 0.37 7.96 -51.92 -0.41 -0.04 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.46 8.10 -51.92 -0.42 0.04 16 34 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.09 0.60 7.66 -51.93 -0.40 0.21 16 36 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 3.00 8.49 -40.82 -0.35 2.66 16 39 H 0.40 4.23 8.84 -40.82 -0.36 3.87 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.13 2.84 5.63 -52.49 -0.30 2.55 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 44 H 0.14 3.51 6.22 -52.49 -0.33 3.18 16 45 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 46 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -35.45 377.57 -8.92 -44.38 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.96 Total: 8.16 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -3.02 Total: -12.28 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.32 Total: -44.61 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.07 Total: -17.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.45 -8.92 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780869513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.721 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds