Wall clock time and date at job start Tue Mar 31 2020 12:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48504 * 109.46819 * 239.99985 * 3 2 1 5 5 H 1.48496 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47119 * 120.00110 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53118 * 109.51842 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27666 * 177.62654 * 10 9 7 12 12 N 1.46854 * 109.52056 * 300.81787 * 11 10 9 13 13 C 1.46900 * 110.99896 * 185.84245 * 12 11 10 14 14 N 1.46500 * 109.47082 * 154.99787 * 13 12 11 15 15 C 1.34698 * 123.07247 * 270.02278 * 14 13 12 16 16 O 1.21222 * 126.38930 * 11.88542 * 15 14 13 17 17 C 1.53779 * 107.21986 * 191.86880 * 15 14 13 18 18 H 1.08994 * 113.72978 * 211.39399 * 17 15 14 19 19 C 1.53086 * 104.80333 * 87.26832 * 17 15 14 20 20 C 1.48947 * 113.35677 * 214.72159 * 19 17 15 21 21 C 1.29144 * 124.88855 * 17.51690 * 20 19 17 22 22 C 1.49605 * 123.29177 * 357.67181 * 21 20 19 23 23 C 1.49328 * 113.69238 * 11.21997 * 22 21 20 24 24 H 1.08992 * 106.95462 * 205.47976 * 23 22 21 25 25 C 1.35185 * 123.06497 * 90.00219 * 14 13 12 26 26 O 1.21222 * 126.86812 * 9.52645 * 25 14 13 27 27 C 1.46841 * 111.19970 * 61.74312 * 12 11 10 28 28 C 1.53037 * 109.52413 * 298.26092 * 27 12 11 29 29 H 0.96994 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.51988 * 59.87793 * 9 7 2 31 31 H 1.08995 * 109.50552 * 57.67910 * 10 9 7 32 32 H 1.09005 * 109.53667 * 297.57884 * 10 9 7 33 33 H 1.08999 * 109.46755 * 180.80448 * 11 10 9 34 34 H 1.08999 * 109.46669 * 60.82965 * 11 10 9 35 35 H 1.09000 * 109.47491 * 34.99872 * 13 12 11 36 36 H 1.09002 * 109.46815 * 275.00040 * 13 12 11 37 37 H 1.08998 * 108.70258 * 335.72225 * 19 17 15 38 38 H 1.08991 * 108.70440 * 93.84623 * 19 17 15 39 39 H 1.08007 * 117.55251 * 197.49342 * 20 19 17 40 40 H 1.08000 * 118.35229 * 177.69233 * 21 20 19 41 41 H 1.09001 * 108.63551 * 132.29129 * 22 21 20 42 42 H 1.09002 * 108.63661 * 250.25285 * 22 21 20 43 43 H 1.08999 * 109.46184 * 58.27366 * 27 12 11 44 44 H 1.08996 * 109.46578 * 178.24207 * 27 12 11 45 45 H 1.09008 * 109.49963 * 299.23790 * 28 27 12 46 46 H 1.08996 * 109.50485 * 179.11875 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0018 11 6 1.4751 -4.9851 0.0616 12 7 0.6523 -5.0190 1.2776 13 6 0.0058 -6.3281 1.4395 14 7 -0.2890 -6.5552 2.8564 15 6 0.5747 -7.1518 3.7005 16 8 1.7433 -7.3900 3.4839 17 6 -0.1983 -7.4738 4.9903 18 1 0.4164 -7.4412 5.8898 19 6 -0.8251 -8.8475 4.7380 20 6 -2.1637 -9.0110 5.3704 21 6 -2.9077 -8.0407 5.7860 22 6 -2.4918 -6.6047 5.7298 23 6 -1.2631 -6.3673 4.9152 24 1 -0.8021 -5.4551 5.2936 25 6 -1.4527 -6.1848 3.4362 26 8 -2.4485 -5.7809 2.8752 27 6 -0.3414 -3.9379 1.2766 28 6 0.3742 -2.5854 1.2529 29 1 -0.4849 0.8400 -0.0004 30 1 0.6227 -2.5570 -0.8883 31 1 2.8984 -3.5837 0.8705 32 1 2.8441 -3.6328 -0.9083 33 1 2.1803 -5.8161 0.0771 34 1 0.8321 -5.0708 -0.8143 35 1 0.6732 -7.1102 1.0774 36 1 -0.9218 -6.3484 0.8674 37 1 -0.9263 -8.9933 3.6626 38 1 -0.1581 -9.6138 5.1327 39 1 -2.5404 -10.0161 5.4899 40 1 -3.8787 -8.2778 6.1951 41 1 -3.3091 -6.0217 5.3051 42 1 -2.3071 -6.2555 6.7457 43 1 -0.9758 -4.0285 0.3948 44 1 -0.9555 -4.0081 2.1743 45 1 0.9983 -2.4883 2.1414 46 1 -0.3637 -1.7834 1.2363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781573253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:58 Heat of formation + Delta-G solvation = -40.207470 kcal Electronic energy + Delta-G solvation = -27833.178055 eV Core-core repulsion = 24109.088898 eV Total energy + Delta-G solvation = -3724.089158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.37057 -38.56510 -38.45509 -37.45942 -35.63010 -33.84746 -32.12410 -31.60926 -30.68591 -29.84867 -26.86379 -25.17785 -24.89932 -23.52110 -22.35272 -21.87726 -21.45833 -19.65537 -18.64407 -18.21841 -17.11893 -17.01118 -16.46144 -16.10299 -16.04833 -15.23129 -14.90507 -14.53631 -14.44485 -14.35998 -14.24333 -13.66158 -13.52345 -13.20990 -13.10018 -12.95050 -12.78878 -12.49054 -12.33484 -12.25731 -11.76929 -11.57502 -11.43267 -10.99026 -10.86098 -10.79091 -10.57976 -10.28715 -10.24114 -10.06190 -9.97120 -9.77930 -9.41855 -9.33398 -8.97834 -8.72968 -8.28424 -7.95001 -5.95765 -4.01380 1.52209 1.94506 2.41744 2.60943 3.33971 3.38426 3.41336 3.63502 3.99091 4.04990 4.33965 4.36626 4.46667 4.67340 4.79175 4.87364 4.95300 4.98650 5.14485 5.29720 5.32030 5.34140 5.40529 5.47194 5.60758 5.62402 5.65282 5.73943 5.84574 6.01165 6.19238 6.25067 6.26217 6.55791 6.57444 6.59665 6.75945 6.83859 7.03819 7.10697 7.27967 7.36023 7.53227 7.55817 7.80050 7.81422 8.03928 8.15116 8.48819 9.01949 9.62946 11.10392 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.003315 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.575219 B = 8444.303039 C = 8999.535235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.067 3.933 12 N -0.547 5.547 13 C 0.264 3.736 14 N -0.573 5.573 15 C 0.530 3.470 16 O -0.466 6.466 17 C -0.104 4.104 18 H 0.134 0.866 19 C -0.083 4.083 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.127 4.127 24 H 0.117 0.883 25 C 0.544 3.456 26 O -0.467 6.467 27 C 0.058 3.942 28 C -0.102 4.102 29 H 0.260 0.740 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.028 0.972 44 H 0.053 0.947 45 H 0.041 0.959 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 -18.628 11.846 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.060 4.060 12 N -0.274 5.274 13 C 0.053 3.947 14 N -0.318 5.318 15 C 0.318 3.682 16 O -0.335 6.335 17 C -0.126 4.126 18 H 0.151 0.849 19 C -0.120 4.120 20 C -0.176 4.176 21 C -0.163 4.163 22 C -0.112 4.112 23 C -0.149 4.149 24 H 0.135 0.865 25 C 0.333 3.667 26 O -0.337 6.337 27 C -0.069 4.069 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.043 -18.316 11.737 22.331 hybrid contribution -0.059 0.884 -0.724 1.144 sum -5.102 -17.432 11.013 21.241 Atomic orbital electron populations 1.69866 1.05861 1.26443 1.50913 1.24974 0.94842 0.99017 0.95180 0.86684 0.79608 0.83278 0.78569 1.20365 1.21367 1.20319 1.21159 0.92849 0.90622 1.50319 0.92772 1.18683 0.92651 0.91802 0.93887 1.21680 0.98700 0.93389 1.00545 1.22083 0.95353 1.00014 0.88586 1.61694 1.24213 1.01697 1.39755 1.22097 0.99216 0.94064 0.79289 1.47400 1.17272 1.54514 1.12577 1.21545 0.85358 0.75294 0.86028 1.90759 1.13605 1.50502 1.78677 1.22645 0.96152 0.95719 0.98034 0.84858 1.20114 0.95531 0.95018 1.01367 1.21553 0.95777 0.99386 1.00853 1.21873 0.99560 0.94257 1.00577 1.19373 0.96095 0.95661 1.00106 1.21060 0.98651 1.01258 0.93893 0.86514 1.20491 0.81575 0.74742 0.89936 1.90770 1.29602 1.41615 1.71717 1.22357 0.92606 0.92882 0.99007 1.21666 1.00156 0.92796 0.99455 0.93023 0.96044 0.92391 0.92835 0.91969 0.95242 0.88640 0.91301 0.90667 0.89359 0.87265 0.86836 0.88992 0.89152 0.95383 0.92898 0.93997 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 11.37 55.43 0.63 -25.08 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.22 8.57 -34.44 -0.29 -14.51 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.24 5.32 -26.65 -0.14 -2.39 16 11 C 0.07 1.22 5.40 -3.83 -0.02 1.20 16 12 N -0.55 -10.09 4.75 -238.58 -1.13 -11.22 16 13 C 0.26 4.03 5.51 -63.32 -0.35 3.69 16 14 N -0.57 -7.99 2.75 -117.45 -0.32 -8.32 16 15 C 0.53 6.90 6.71 -9.46 -0.06 6.84 16 16 O -0.47 -7.52 17.73 5.61 0.10 -7.42 16 17 C -0.10 -0.92 4.07 -89.79 -0.37 -1.29 16 18 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.08 -0.64 5.18 -28.68 -0.15 -0.79 16 20 C -0.16 -1.12 9.75 -36.36 -0.35 -1.48 16 21 C -0.14 -1.04 9.91 -36.05 -0.36 -1.40 16 22 C -0.08 -0.58 5.65 -30.22 -0.17 -0.75 16 23 C -0.13 -1.23 2.39 -93.43 -0.22 -1.46 16 24 H 0.12 1.06 8.11 -51.93 -0.42 0.64 16 25 C 0.54 7.39 6.40 -11.03 -0.07 7.32 16 26 O -0.47 -7.70 16.43 5.61 0.09 -7.61 16 27 C 0.06 1.21 5.31 -3.84 -0.02 1.19 16 28 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.32 7.59 -51.93 -0.39 0.93 16 36 H 0.07 1.04 7.65 -51.93 -0.40 0.65 16 37 H 0.08 0.66 7.43 -51.93 -0.39 0.28 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.09 0.80 7.80 -51.93 -0.40 0.40 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.07 6.07 -51.93 -0.31 0.76 16 45 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.09 2.53 6.17 -51.93 -0.32 2.21 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -31.93 360.81 -10.47 -42.40 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.24 Total: -0.89 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.01 Total: -3.83 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.83 Total: -44.62 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.19 Total: -15.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.93 -10.47 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781573253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds