Wall clock time and date at job start Tue Mar 31 2020 12:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48504 * 109.46819 * 239.99985 * 3 2 1 5 5 H 1.48496 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47119 * 120.00110 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53118 * 109.51842 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27666 * 177.62654 * 10 9 7 12 12 N 1.46854 * 109.52056 * 300.81787 * 11 10 9 13 13 C 1.46900 * 110.99896 * 185.84245 * 12 11 10 14 14 N 1.46500 * 109.47082 * 154.99787 * 13 12 11 15 15 C 1.34698 * 123.07247 * 270.02278 * 14 13 12 16 16 O 1.21222 * 126.38930 * 11.88542 * 15 14 13 17 17 C 1.53779 * 107.21986 * 191.86880 * 15 14 13 18 18 H 1.08994 * 113.72978 * 211.39399 * 17 15 14 19 19 C 1.53086 * 104.80333 * 87.26832 * 17 15 14 20 20 C 1.48947 * 113.35677 * 214.72159 * 19 17 15 21 21 C 1.29144 * 124.88855 * 17.51690 * 20 19 17 22 22 C 1.49605 * 123.29177 * 357.67181 * 21 20 19 23 23 C 1.49328 * 113.69238 * 11.21997 * 22 21 20 24 24 H 1.08992 * 106.95462 * 205.47976 * 23 22 21 25 25 C 1.35185 * 123.06497 * 90.00219 * 14 13 12 26 26 O 1.21222 * 126.86812 * 9.52645 * 25 14 13 27 27 C 1.46841 * 111.19970 * 61.74312 * 12 11 10 28 28 C 1.53037 * 109.52413 * 298.26092 * 27 12 11 29 29 H 0.96994 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.51988 * 59.87793 * 9 7 2 31 31 H 1.08995 * 109.50552 * 57.67910 * 10 9 7 32 32 H 1.09005 * 109.53667 * 297.57884 * 10 9 7 33 33 H 1.08999 * 109.46755 * 180.80448 * 11 10 9 34 34 H 1.08999 * 109.46669 * 60.82965 * 11 10 9 35 35 H 1.09000 * 109.47491 * 34.99872 * 13 12 11 36 36 H 1.09002 * 109.46815 * 275.00040 * 13 12 11 37 37 H 1.08998 * 108.70258 * 335.72225 * 19 17 15 38 38 H 1.08991 * 108.70440 * 93.84623 * 19 17 15 39 39 H 1.08007 * 117.55251 * 197.49342 * 20 19 17 40 40 H 1.08000 * 118.35229 * 177.69233 * 21 20 19 41 41 H 1.09001 * 108.63551 * 132.29129 * 22 21 20 42 42 H 1.09002 * 108.63661 * 250.25285 * 22 21 20 43 43 H 1.08999 * 109.46184 * 58.27366 * 27 12 11 44 44 H 1.08996 * 109.46578 * 178.24207 * 27 12 11 45 45 H 1.09008 * 109.49963 * 299.23790 * 28 27 12 46 46 H 1.08996 * 109.50485 * 179.11875 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0018 11 6 1.4751 -4.9851 0.0616 12 7 0.6523 -5.0190 1.2776 13 6 0.0058 -6.3281 1.4395 14 7 -0.2890 -6.5552 2.8564 15 6 0.5747 -7.1518 3.7005 16 8 1.7433 -7.3900 3.4839 17 6 -0.1983 -7.4738 4.9903 18 1 0.4164 -7.4412 5.8898 19 6 -0.8251 -8.8475 4.7380 20 6 -2.1637 -9.0110 5.3704 21 6 -2.9077 -8.0407 5.7860 22 6 -2.4918 -6.6047 5.7298 23 6 -1.2631 -6.3673 4.9152 24 1 -0.8021 -5.4551 5.2936 25 6 -1.4527 -6.1848 3.4362 26 8 -2.4485 -5.7809 2.8752 27 6 -0.3414 -3.9379 1.2766 28 6 0.3742 -2.5854 1.2529 29 1 -0.4849 0.8400 -0.0004 30 1 0.6227 -2.5570 -0.8883 31 1 2.8984 -3.5837 0.8705 32 1 2.8441 -3.6328 -0.9083 33 1 2.1803 -5.8161 0.0771 34 1 0.8321 -5.0708 -0.8143 35 1 0.6732 -7.1102 1.0774 36 1 -0.9218 -6.3484 0.8674 37 1 -0.9263 -8.9933 3.6626 38 1 -0.1581 -9.6138 5.1327 39 1 -2.5404 -10.0161 5.4899 40 1 -3.8787 -8.2778 6.1951 41 1 -3.3091 -6.0217 5.3051 42 1 -2.3071 -6.2555 6.7457 43 1 -0.9758 -4.0285 0.3948 44 1 -0.9555 -4.0081 2.1743 45 1 0.9983 -2.4883 2.1414 46 1 -0.3637 -1.7834 1.2363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781573253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:57 Heat of formation + Delta-G solvation = -59.702702 kcal Electronic energy + Delta-G solvation = -27834.023432 eV Core-core repulsion = 24109.088898 eV Total energy + Delta-G solvation = -3724.934534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34968 -39.93128 -39.68085 -38.42460 -36.84905 -35.54265 -33.54135 -32.33842 -32.00124 -31.60523 -28.41761 -26.49542 -26.00726 -24.54628 -23.93616 -23.21784 -22.79574 -20.68485 -20.46486 -19.05530 -18.52357 -18.18262 -17.91622 -17.21845 -16.95831 -16.63370 -16.24064 -15.96825 -15.76333 -15.46212 -15.26060 -15.01675 -14.77069 -14.41350 -14.36801 -14.20144 -14.15055 -13.73352 -13.49829 -13.28962 -13.15185 -12.95892 -12.89161 -12.68058 -12.46696 -12.22652 -12.09047 -11.98870 -11.54630 -11.46778 -11.20840 -11.10223 -10.94212 -10.84413 -10.71392 -10.40676 -9.86377 -9.46912 -8.10301 -6.24270 0.47702 1.34917 1.40039 1.41493 1.43175 1.49216 1.60388 2.42072 2.79908 2.86787 3.13272 3.16551 3.31111 3.65577 3.80041 3.99934 4.05861 4.11145 4.15220 4.20032 4.24459 4.26612 4.33731 4.40172 4.52884 4.54910 4.65243 4.75089 4.76503 4.83834 4.87494 4.97195 4.99890 5.03060 5.13934 5.20762 5.23426 5.46615 5.56637 5.68721 5.74684 5.88046 5.92405 6.05077 6.05215 6.16281 6.25247 6.36242 6.72539 6.86692 7.43742 8.94242 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.003315 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.575219 B = 8444.303039 C = 8999.535235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.098 4.098 11 C 0.072 3.928 12 N -0.554 5.554 13 C 0.264 3.736 14 N -0.579 5.579 15 C 0.527 3.473 16 O -0.499 6.499 17 C -0.084 4.084 18 H 0.163 0.837 19 C -0.084 4.084 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.122 4.122 24 H 0.126 0.874 25 C 0.537 3.463 26 O -0.503 6.503 27 C 0.077 3.923 28 C -0.091 4.091 29 H 0.260 0.740 30 H -0.009 1.009 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.027 0.973 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -20.141 13.536 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.135 4.135 11 C -0.055 4.055 12 N -0.281 5.281 13 C 0.053 3.947 14 N -0.323 5.323 15 C 0.317 3.683 16 O -0.371 6.371 17 C -0.105 4.105 18 H 0.181 0.819 19 C -0.121 4.121 20 C -0.179 4.179 21 C -0.169 4.169 22 C -0.112 4.112 23 C -0.143 4.143 24 H 0.144 0.856 25 C 0.328 3.672 26 O -0.375 6.375 27 C -0.050 4.050 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.009 0.991 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.036 0.964 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.538 -19.855 13.444 24.404 hybrid contribution -0.229 1.343 -1.282 1.871 sum -4.767 -18.512 12.162 22.657 Atomic orbital electron populations 1.70014 1.07208 1.27180 1.51365 1.25769 0.95684 1.02459 0.94767 0.85663 0.78411 0.79062 0.78833 1.19590 1.20921 1.19713 1.21539 0.93025 0.92138 1.50568 0.92966 1.18647 0.93080 0.92821 0.92759 1.21532 0.97914 0.93593 1.00505 1.22032 0.95665 0.99068 0.88759 1.61644 1.23824 1.02571 1.40044 1.22116 0.99381 0.92568 0.80681 1.47559 1.17835 1.54699 1.12224 1.22285 0.84886 0.74041 0.87044 1.90740 1.15031 1.51737 1.79562 1.22775 0.95155 0.95918 0.96681 0.81929 1.20160 0.96479 0.94643 1.00809 1.21661 0.95332 1.00268 1.00606 1.22023 1.00274 0.93783 1.00829 1.19427 0.94586 0.96239 1.00914 1.21143 1.00022 1.02113 0.90998 0.85616 1.21220 0.80739 0.73555 0.91670 1.90748 1.30794 1.43177 1.72821 1.21994 0.92447 0.92007 0.98582 1.21404 0.99095 0.94078 0.98390 0.93060 0.99054 0.93298 0.92022 0.88990 0.94730 0.86810 0.91363 0.92028 0.87429 0.85656 0.85384 0.90240 0.86511 0.96446 0.92710 0.95399 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 11.37 21.45 0.24 -54.20 16 2 C 0.01 0.66 5.31 84.65 0.45 1.11 16 3 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -30.40 8.57 25.60 0.22 -30.18 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.05 2.37 2.16 -11.46 -0.02 2.34 16 10 C -0.10 -4.17 5.32 30.65 0.16 -4.01 16 11 C 0.07 2.56 5.40 86.32 0.47 3.02 16 12 N -0.55 -20.25 4.75 -908.73 -4.32 -24.57 16 13 C 0.26 7.85 5.51 170.81 0.94 8.79 16 14 N -0.58 -15.65 2.75 -762.15 -2.10 -17.75 16 15 C 0.53 12.88 6.71 88.68 0.59 13.48 16 16 O -0.50 -15.38 17.73 -2.85 -0.05 -15.43 16 17 C -0.08 -1.26 4.07 -10.25 -0.04 -1.31 16 18 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 19 C -0.08 -1.07 5.18 29.33 0.15 -0.91 16 20 C -0.16 -1.81 9.75 26.98 0.26 -1.55 16 21 C -0.15 -1.76 9.91 27.18 0.27 -1.49 16 22 C -0.07 -0.98 5.65 28.34 0.16 -0.82 16 23 C -0.12 -2.12 2.39 -12.61 -0.03 -2.15 16 24 H 0.13 2.01 8.11 -2.39 -0.02 1.99 16 25 C 0.54 14.26 6.40 87.44 0.56 14.82 16 26 O -0.50 -16.73 16.43 -2.85 -0.05 -16.78 16 27 C 0.08 3.27 5.31 86.33 0.46 3.73 16 28 C -0.09 -4.61 5.12 30.65 0.16 -4.45 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.09 2.76 7.91 -2.39 -0.02 2.74 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 2.96 7.59 -2.39 -0.02 2.95 16 36 H 0.07 2.05 7.65 -2.39 -0.02 2.04 16 37 H 0.06 0.98 7.43 -2.39 -0.02 0.96 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.13 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.08 1.29 7.80 -2.39 -0.02 1.27 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 2.28 6.07 -2.39 -0.01 2.27 16 45 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.06 3.48 6.17 -2.39 -0.01 3.47 16 Total: -1.00 -71.15 360.81 1.48 -69.67 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.97 Total: 11.98 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.76 Total: 0.44 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -6.17 Total: -96.52 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.10 Total: -32.21 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.15 1.48 -69.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781573253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.970 kcal (2) G-P(sol) polarization free energy of solvation -71.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds