Wall clock time and date at job start Tue Mar 31 2020 12:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38248 * 120.00063 * 2 1 4 4 C 1.38214 * 120.00334 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99370 * 359.95480 * 4 3 2 6 6 C 1.38209 * 120.00472 * 0.02562 * 5 4 3 7 7 C 1.38211 * 119.99804 * 179.73408 * 2 1 3 8 8 C 1.50705 * 120.00035 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.51140 * 324.90069 * 8 7 2 10 10 C 1.53292 * 109.51094 * 85.00167 * 8 7 2 11 11 N 1.47155 * 108.38498 * 172.22573 * 10 8 7 12 12 C 1.34770 * 120.98369 * 129.48749 * 11 10 8 13 13 O 1.21587 * 120.00106 * 175.01641 * 12 11 10 14 14 N 1.34782 * 119.99973 * 355.01436 * 12 11 10 15 15 C 1.46494 * 119.99941 * 185.08036 * 14 12 11 16 16 C 1.50706 * 109.47100 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99609 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00087 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47221 * 120.00380 * 20 18 16 23 23 H 1.48501 * 109.46879 * 240.00134 * 20 18 16 24 24 C 1.47154 * 118.03362 * 309.46979 * 11 10 8 25 25 H 1.09007 * 109.68244 * 170.29252 * 24 11 10 26 26 C 1.53000 * 109.68081 * 290.80999 * 24 11 10 27 27 C 1.53290 * 108.38671 * 50.53408 * 24 11 10 28 28 O 1.42963 * 109.22285 * 307.69340 * 27 24 11 29 29 H 1.09001 * 109.47236 * 89.99071 * 1 2 3 30 30 H 1.09006 * 109.46957 * 329.99804 * 1 2 3 31 31 H 1.08996 * 109.47559 * 209.99982 * 1 2 3 32 32 H 1.08001 * 120.00446 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.00262 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00172 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.00565 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.68486 * 291.95140 * 10 8 7 37 37 H 1.08998 * 109.68079 * 52.47027 * 10 8 7 38 38 H 0.97000 * 119.99985 * 5.08623 * 14 12 11 39 39 H 1.09003 * 109.47457 * 299.99991 * 15 14 12 40 40 H 1.09003 * 109.47488 * 60.00399 * 15 14 12 41 41 H 0.96998 * 120.00252 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.47447 * 59.99906 * 26 24 11 43 43 H 1.09004 * 109.47228 * 180.02562 * 26 24 11 44 44 H 1.09000 * 109.46834 * 300.00007 * 26 24 11 45 45 H 1.08994 * 109.51785 * 67.62296 * 27 24 11 46 46 H 1.09003 * 109.51587 * 187.77246 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 3.5806 -1.1970 0.0003 7 6 2.1981 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0122 9 1 0.5347 -2.3942 0.6028 10 6 1.0789 -2.8895 -1.4252 11 7 0.5141 -4.2483 -1.4103 12 6 -0.6591 -4.5186 -2.0160 13 8 -1.0651 -5.6634 -2.0713 14 7 -1.3823 -3.5200 -2.5604 15 6 -2.7078 -3.7963 -3.1197 16 6 -3.3002 -2.5209 -3.6615 17 1 -2.7446 -1.5971 -3.5962 18 6 -4.5509 -2.5337 -4.2416 19 7 -5.2272 -3.6587 -4.3217 20 14 -5.2848 -0.9529 -4.9139 21 1 -4.3307 0.1651 -4.7022 22 1 -5.5507 -1.1092 -6.3665 23 1 -6.5569 -0.6579 -4.2068 24 6 1.2684 -5.3032 -0.7148 25 1 0.6564 -6.2019 -0.6375 26 6 2.5494 -5.6172 -1.4902 27 6 1.6247 -4.7981 0.6879 28 8 2.2657 -3.5247 0.5810 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3634 -0.8899 0.5138 32 1 1.6584 2.1326 -0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3516 -0.0002 -0.0001 35 1 4.1206 -2.1324 0.0010 36 1 0.3413 -2.1896 -1.8178 37 1 1.9723 -2.8696 -2.0493 38 1 -1.0251 -2.6185 -2.5819 39 1 -2.6176 -4.5254 -3.9249 40 1 -3.3556 -4.1953 -2.3391 41 1 -6.1072 -3.6677 -4.7294 42 1 3.1629 -4.7188 -1.5576 43 1 3.1051 -6.3991 -0.9725 44 1 2.2927 -5.9578 -2.4933 45 1 0.7157 -4.6995 1.2812 46 1 2.2994 -5.5060 1.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:30 Heat of formation + Delta-G solvation = -45.229182 kcal Electronic energy + Delta-G solvation = -27512.156146 eV Core-core repulsion = 23787.849230 eV Total energy + Delta-G solvation = -3724.306916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67545 -39.38618 -38.06889 -34.79607 -34.36596 -33.64202 -32.66867 -32.12049 -30.79600 -28.27042 -27.07156 -26.84292 -26.25178 -24.11839 -23.01825 -22.04410 -21.05467 -20.54128 -18.95691 -18.26125 -16.78622 -16.73011 -16.19799 -15.89938 -15.49682 -15.31430 -14.88195 -14.74141 -14.54221 -14.31751 -14.07191 -13.69476 -13.47008 -13.22074 -13.10997 -12.86303 -12.54537 -12.38465 -12.26520 -12.07716 -11.97413 -11.78489 -11.52377 -11.44558 -11.16482 -11.04888 -10.93344 -10.91728 -10.47443 -10.30566 -10.06210 -9.43290 -9.35653 -8.95496 -8.78389 -8.74683 -8.33618 -7.76109 -6.16955 -4.23609 1.16253 1.28283 2.99947 3.22664 3.30091 3.32830 3.49002 3.63819 3.84257 4.29133 4.55643 4.61089 4.68936 4.72262 4.82664 4.91102 4.95312 4.97825 5.13368 5.17167 5.19434 5.26492 5.39901 5.44519 5.51425 5.57751 5.59298 5.63052 5.70019 5.72523 5.81425 5.93215 6.01983 6.09748 6.22954 6.33146 6.39333 6.49523 6.66923 6.86915 7.03635 7.09385 7.47745 7.50769 7.55204 7.82103 7.99728 8.72589 8.86145 9.27532 9.45078 10.93333 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.004228 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.572546 B = 6620.941573 C = 8691.116373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.120 3.880 9 H 0.077 0.923 10 C 0.093 3.907 11 N -0.636 5.636 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.121 3.879 25 H 0.108 0.892 26 C -0.155 4.155 27 C 0.055 3.945 28 O -0.371 6.371 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.384 0.616 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.749 6.720 10.898 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.084 4.084 8 C 0.061 3.939 9 H 0.094 0.906 10 C -0.032 4.032 11 N -0.376 5.376 12 C 0.401 3.599 13 O -0.474 6.474 14 N -0.382 5.382 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.016 3.984 25 H 0.126 0.874 26 C -0.213 4.213 27 C -0.023 4.023 28 O -0.290 6.290 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.219 0.781 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.357 5.817 10.817 22.087 hybrid contribution -0.523 1.251 -0.551 1.464 sum 17.834 7.068 10.265 21.758 Atomic orbital electron populations 1.20977 0.90787 1.03258 1.03339 1.19724 0.96215 0.92250 0.98804 1.20983 0.94237 0.97317 1.01501 1.21151 0.94320 0.98048 0.99791 1.21132 0.99822 0.92488 1.01550 1.20986 0.93426 0.98375 0.97709 1.19330 0.93963 0.92482 1.02669 1.21217 0.93078 0.85594 0.93974 0.90551 1.22151 0.99857 0.84675 0.96486 1.47436 1.22234 1.08739 1.59227 1.16034 0.79476 0.85618 0.78809 1.90864 1.71373 1.19870 1.65251 1.45884 1.20783 1.09164 1.62385 1.19004 0.75976 0.96876 0.93626 1.21232 1.02318 0.94175 1.40196 0.91997 1.24929 0.96675 0.96701 0.95608 1.69984 1.12971 1.25735 1.43518 0.86381 0.79101 0.82822 0.78722 1.19646 1.20790 1.20795 1.21631 0.93427 0.91993 0.91311 0.87424 1.22025 0.96850 1.01636 1.00804 1.23043 0.98375 0.85104 0.95753 1.87890 1.40067 1.18575 1.82479 0.90190 0.91166 0.91108 0.85898 0.86215 0.86177 0.85304 0.89209 0.90847 0.78093 0.95646 0.95793 0.92502 0.92140 0.91767 0.92212 0.92562 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.46 36.01 0.34 -0.97 16 2 C -0.07 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.09 -0.93 9.35 -39.58 -0.37 -1.30 16 7 C -0.08 -0.96 5.07 -104.62 -0.53 -1.49 16 8 C 0.12 1.45 2.49 -27.73 -0.07 1.38 16 9 H 0.08 0.96 6.17 -51.93 -0.32 0.64 16 10 C 0.09 1.23 5.51 -3.53 -0.02 1.21 16 11 N -0.64 -10.19 2.71 -170.43 -0.46 -10.65 16 12 C 0.70 14.74 8.31 -86.92 -0.72 14.01 16 13 O -0.59 -14.88 15.84 5.29 0.08 -14.80 16 14 N -0.73 -15.78 5.46 -66.41 -0.36 -16.15 16 15 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 16 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 1.64 3.21 -67.42 -0.22 1.42 16 25 H 0.11 1.64 7.12 -51.93 -0.37 1.27 16 26 C -0.15 -1.82 9.24 37.16 0.34 -1.47 16 27 C 0.05 0.61 6.36 37.31 0.24 0.85 16 28 O -0.37 -4.45 8.85 -35.23 -0.31 -4.76 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.75 6.02 -51.93 -0.31 0.44 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.33 7.35 -52.49 -0.39 0.94 16 36 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 37 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 38 H 0.38 7.26 5.83 -40.82 -0.24 7.02 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.06 0.69 7.23 -51.93 -0.38 0.32 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -32.55 369.92 -9.88 -42.42 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.87 Total: 6.45 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.25 Total: 1.47 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.09 Total: -52.04 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.23 Total: -19.56 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.55 -9.88 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.806 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds