Wall clock time and date at job start Tue Mar 31 2020 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38248 * 120.00063 * 2 1 4 4 C 1.38214 * 120.00334 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99370 * 359.95480 * 4 3 2 6 6 C 1.38209 * 120.00472 * 0.02562 * 5 4 3 7 7 C 1.38211 * 119.99804 * 179.73408 * 2 1 3 8 8 C 1.50705 * 120.00035 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.51140 * 324.90069 * 8 7 2 10 10 C 1.53292 * 109.51094 * 85.00167 * 8 7 2 11 11 N 1.47155 * 108.38498 * 172.22573 * 10 8 7 12 12 C 1.34770 * 120.98369 * 129.48749 * 11 10 8 13 13 O 1.21587 * 120.00106 * 175.01641 * 12 11 10 14 14 N 1.34782 * 119.99973 * 355.01436 * 12 11 10 15 15 C 1.46494 * 119.99941 * 185.08036 * 14 12 11 16 16 C 1.50706 * 109.47100 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99609 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00087 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47221 * 120.00380 * 20 18 16 23 23 H 1.48501 * 109.46879 * 240.00134 * 20 18 16 24 24 C 1.47154 * 118.03362 * 309.46979 * 11 10 8 25 25 H 1.09007 * 109.68244 * 170.29252 * 24 11 10 26 26 C 1.53000 * 109.68081 * 290.80999 * 24 11 10 27 27 C 1.53290 * 108.38671 * 50.53408 * 24 11 10 28 28 O 1.42963 * 109.22285 * 307.69340 * 27 24 11 29 29 H 1.09001 * 109.47236 * 89.99071 * 1 2 3 30 30 H 1.09006 * 109.46957 * 329.99804 * 1 2 3 31 31 H 1.08996 * 109.47559 * 209.99982 * 1 2 3 32 32 H 1.08001 * 120.00446 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.00262 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.00172 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.00565 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.68486 * 291.95140 * 10 8 7 37 37 H 1.08998 * 109.68079 * 52.47027 * 10 8 7 38 38 H 0.97000 * 119.99985 * 5.08623 * 14 12 11 39 39 H 1.09003 * 109.47457 * 299.99991 * 15 14 12 40 40 H 1.09003 * 109.47488 * 60.00399 * 15 14 12 41 41 H 0.96998 * 120.00252 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.47447 * 59.99906 * 26 24 11 43 43 H 1.09004 * 109.47228 * 180.02562 * 26 24 11 44 44 H 1.09000 * 109.46834 * 300.00007 * 26 24 11 45 45 H 1.08994 * 109.51785 * 67.62296 * 27 24 11 46 46 H 1.09003 * 109.51587 * 187.77246 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 3.5806 -1.1970 0.0003 7 6 2.1981 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0122 9 1 0.5347 -2.3942 0.6028 10 6 1.0789 -2.8895 -1.4252 11 7 0.5141 -4.2483 -1.4103 12 6 -0.6591 -4.5186 -2.0160 13 8 -1.0651 -5.6634 -2.0713 14 7 -1.3823 -3.5200 -2.5604 15 6 -2.7078 -3.7963 -3.1197 16 6 -3.3002 -2.5209 -3.6615 17 1 -2.7446 -1.5971 -3.5962 18 6 -4.5509 -2.5337 -4.2416 19 7 -5.2272 -3.6587 -4.3217 20 14 -5.2848 -0.9529 -4.9139 21 1 -4.3307 0.1651 -4.7022 22 1 -5.5507 -1.1092 -6.3665 23 1 -6.5569 -0.6579 -4.2068 24 6 1.2684 -5.3032 -0.7148 25 1 0.6564 -6.2019 -0.6375 26 6 2.5494 -5.6172 -1.4902 27 6 1.6247 -4.7981 0.6879 28 8 2.2657 -3.5247 0.5810 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3634 -0.8899 0.5138 32 1 1.6584 2.1326 -0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3516 -0.0002 -0.0001 35 1 4.1206 -2.1324 0.0010 36 1 0.3413 -2.1896 -1.8178 37 1 1.9723 -2.8696 -2.0493 38 1 -1.0251 -2.6185 -2.5819 39 1 -2.6176 -4.5254 -3.9249 40 1 -3.3556 -4.1953 -2.3391 41 1 -6.1072 -3.6677 -4.7294 42 1 3.1629 -4.7188 -1.5576 43 1 3.1051 -6.3991 -0.9725 44 1 2.2927 -5.9578 -2.4933 45 1 0.7157 -4.6995 1.2812 46 1 2.2994 -5.5060 1.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:28 Heat of formation + Delta-G solvation = -65.167665 kcal Electronic energy + Delta-G solvation = -27513.020744 eV Core-core repulsion = 23787.849230 eV Total energy + Delta-G solvation = -3725.171513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86876 -40.49963 -39.29055 -36.34774 -35.96681 -34.83119 -34.17897 -33.28387 -31.85083 -29.55939 -28.73616 -27.75314 -27.26556 -25.14250 -24.88613 -23.03214 -22.28339 -21.55976 -20.48966 -19.65573 -18.16293 -17.84616 -17.57082 -17.21779 -16.77671 -16.69394 -16.23302 -16.00199 -15.67710 -15.36431 -15.23529 -14.96111 -14.74757 -14.44948 -14.26609 -13.96656 -13.92269 -13.69560 -13.40767 -13.22453 -13.16843 -12.92326 -12.81968 -12.76106 -12.64575 -12.44665 -12.19899 -11.97560 -11.81364 -11.52623 -11.45718 -11.22214 -11.05706 -10.82578 -10.08716 -9.72944 -9.55290 -9.32184 -8.29012 -6.45546 0.39233 0.53471 1.42741 1.44523 1.55902 1.61487 2.12052 2.37392 2.57269 2.84659 3.06227 3.06437 3.64655 3.68944 3.81098 3.89790 4.00376 4.09805 4.13011 4.18640 4.27981 4.34657 4.47149 4.48513 4.64437 4.70299 4.74417 4.76503 4.81947 4.88698 4.91016 4.97135 5.06564 5.18444 5.24190 5.25755 5.31997 5.42707 5.48297 5.57416 5.66253 5.66869 5.71869 5.82650 6.02220 6.08235 6.15500 6.65231 7.08120 7.24433 7.60718 8.83603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.004228 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.572546 B = 6620.941573 C = 8691.116373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.134 4.134 6 C -0.096 4.096 7 C -0.099 4.099 8 C 0.129 3.871 9 H 0.069 0.931 10 C 0.092 3.908 11 N -0.626 5.626 12 C 0.696 3.304 13 O -0.641 6.641 14 N -0.723 5.723 15 C 0.286 3.714 16 C -0.553 4.553 17 H 0.082 0.918 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.278 1.278 24 C 0.111 3.889 25 H 0.087 0.913 26 C -0.145 4.145 27 C 0.061 3.939 28 O -0.369 6.369 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.400 0.600 39 H -0.016 1.016 40 H -0.013 1.013 41 H 0.269 0.731 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.918 9.489 11.533 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.114 4.114 7 C -0.100 4.100 8 C 0.070 3.930 9 H 0.086 0.914 10 C -0.031 4.031 11 N -0.365 5.365 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.378 5.378 15 C 0.163 3.837 16 C -0.590 4.590 17 H 0.100 0.900 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.203 1.203 24 C 0.008 3.992 25 H 0.105 0.895 26 C -0.204 4.204 27 C -0.016 4.016 28 O -0.287 6.287 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.237 0.763 39 H 0.002 0.998 40 H 0.005 0.995 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 20.608 8.622 11.490 25.120 hybrid contribution -1.103 0.355 -0.697 1.352 sum 19.505 8.977 10.793 24.032 Atomic orbital electron populations 1.20970 0.90895 1.03457 1.03023 1.19844 0.96344 0.92651 0.99338 1.21257 0.94874 0.97530 1.01056 1.21501 0.94210 0.99086 0.98475 1.21432 1.01060 0.92078 1.00618 1.21108 0.93135 0.99174 0.98018 1.19310 0.94416 0.92017 1.04219 1.21079 0.93131 0.86278 0.92503 0.91357 1.22334 0.99861 0.82813 0.98080 1.47437 1.20554 1.10737 1.57723 1.16191 0.80659 0.84637 0.78783 1.90824 1.72947 1.21655 1.66901 1.45494 1.19462 1.10245 1.62610 1.18434 0.77744 0.96257 0.91235 1.21573 1.02837 0.94524 1.40104 0.89993 1.26026 0.97076 1.00598 0.95603 1.70144 1.13570 1.28648 1.44491 0.85128 0.78328 0.78228 0.77646 1.17553 1.20524 1.20331 1.21935 0.93548 0.90724 0.93002 0.89490 1.21961 0.95916 1.02832 0.99642 1.23111 0.99144 0.85455 0.93893 1.87906 1.39982 1.18614 1.82227 0.90736 0.89867 0.92062 0.84277 0.83727 0.83977 0.85109 0.89462 0.89790 0.76287 0.99763 0.99504 0.92221 0.91429 0.88807 0.94294 0.93147 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.46 71.24 0.67 -1.82 16 2 C -0.08 -1.65 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 4 C -0.11 -1.73 10.05 22.27 0.22 -1.51 16 5 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 6 C -0.10 -1.85 9.35 22.27 0.21 -1.64 16 7 C -0.10 -2.11 5.07 -19.86 -0.10 -2.21 16 8 C 0.13 2.99 2.49 29.95 0.07 3.06 16 9 H 0.07 1.71 6.17 -2.39 -0.01 1.69 16 10 C 0.09 2.41 5.51 86.35 0.48 2.89 16 11 N -0.63 -20.34 2.71 -811.39 -2.20 -22.54 16 12 C 0.70 30.62 8.31 179.06 1.49 32.11 16 13 O -0.64 -33.99 15.84 -3.99 -0.06 -34.05 16 14 N -0.72 -32.56 5.46 -482.29 -2.64 -35.19 16 15 C 0.29 16.12 5.43 85.64 0.47 16.59 16 16 C -0.55 -30.22 9.28 25.60 0.24 -29.99 16 17 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 20 Si 0.98 42.16 29.54 68.60 2.03 44.19 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.11 2.99 3.21 44.96 0.14 3.14 16 25 H 0.09 2.73 7.12 -2.38 -0.02 2.72 16 26 C -0.15 -3.22 9.24 71.98 0.67 -2.56 16 27 C 0.06 1.28 6.36 72.08 0.46 1.74 16 28 O -0.37 -8.16 8.85 -148.98 -1.32 -9.48 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 31 H 0.06 1.30 6.02 -2.39 -0.01 1.28 16 32 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.13 2.40 7.35 -2.91 -0.02 2.37 16 36 H 0.09 2.31 5.51 -2.39 -0.01 2.30 16 37 H 0.08 2.06 7.66 -2.39 -0.02 2.04 16 38 H 0.40 15.32 5.83 -92.71 -0.54 14.78 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.07 1.41 7.23 -2.39 -0.02 1.39 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.38 369.92 2.34 -71.04 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.45 Total: 27.02 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.80 Total: 14.96 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.55 Total: -113.67 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.38 Total: -43.54 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.38 2.34 -71.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.870 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds