Wall clock time and date at job start Tue Mar 31 2020 12:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 120.00425 * 2 1 4 4 C 1.38211 * 120.00208 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00209 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99793 * 359.81627 * 5 4 3 7 7 C 1.38216 * 119.99862 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.00160 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.55400 * 34.86672 * 8 7 2 10 10 C 1.53305 * 109.50814 * 274.74847 * 8 7 2 11 11 N 1.47149 * 108.37892 * 187.77315 * 10 8 7 12 12 C 1.34778 * 120.97992 * 230.55424 * 11 10 8 13 13 O 1.21589 * 120.00020 * 174.76001 * 12 11 10 14 14 N 1.34769 * 119.99961 * 354.75901 * 12 11 10 15 15 C 1.46509 * 120.00125 * 184.97504 * 14 12 11 16 16 C 1.50704 * 109.47050 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00091 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99657 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99694 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47381 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47289 * 120.00413 * 20 18 16 23 23 H 1.48506 * 109.46972 * 239.99942 * 20 18 16 24 24 C 1.47152 * 118.03847 * 50.53418 * 11 10 8 25 25 H 1.09001 * 109.68060 * 189.74027 * 24 11 10 26 26 C 1.53002 * 109.68203 * 69.18941 * 24 11 10 27 27 C 1.53293 * 108.38527 * 309.46047 * 24 11 10 28 28 O 1.42958 * 109.51465 * 154.99992 * 8 7 2 29 29 H 1.09004 * 109.46706 * 269.98049 * 1 2 3 30 30 H 1.09001 * 109.46839 * 29.97442 * 1 2 3 31 31 H 1.08996 * 109.47166 * 149.97753 * 1 2 3 32 32 H 1.08002 * 119.99222 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.00009 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.00174 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.99778 * 180.23231 * 6 5 4 36 36 H 1.08996 * 109.68008 * 307.49095 * 10 8 7 37 37 H 1.08993 * 109.68293 * 68.05324 * 10 8 7 38 38 H 0.97000 * 120.00433 * 4.98092 * 14 12 11 39 39 H 1.08998 * 109.47365 * 300.00236 * 15 14 12 40 40 H 1.08995 * 109.46609 * 60.00533 * 15 14 12 41 41 H 0.97000 * 119.99998 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46809 * 301.06737 * 26 24 11 43 43 H 1.08996 * 109.47383 * 61.07237 * 26 24 11 44 44 H 1.09000 * 109.46932 * 181.07260 * 26 24 11 45 45 H 1.09001 * 109.51106 * 172.22250 * 27 24 11 46 46 H 1.09000 * 109.51417 * 292.37828 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0060 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.5321 -2.3965 -0.5873 10 6 1.0856 -2.8860 1.4396 11 7 0.5208 -4.2447 1.4305 12 6 -0.6501 -4.5134 2.0415 13 8 -1.1479 -5.6184 1.9428 14 7 -1.2692 -3.5574 2.7619 15 6 -2.4841 -3.8789 3.5150 16 6 -2.9744 -2.6451 4.2281 17 1 -2.4353 -1.7145 4.1298 18 6 -4.1119 -2.7042 5.0051 19 7 -4.7686 -3.8374 5.1244 20 14 -4.7200 -1.1748 5.8883 21 1 -3.8111 -0.0382 5.5930 22 1 -6.0909 -0.8458 5.4217 23 1 -4.7421 -1.4243 7.3521 24 6 1.2719 -5.3014 0.7343 25 1 0.6593 -6.2000 0.6615 26 6 2.5564 -5.6135 1.5047 27 6 1.6217 -4.7998 -0.6714 28 8 2.2632 -3.5261 -0.5705 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6583 2.1326 -0.0004 33 1 4.1205 2.1325 0.0010 34 1 5.3517 -0.0001 0.0024 35 1 4.1206 -2.1323 0.0106 36 1 1.9819 -2.8652 2.0593 37 1 0.3497 -2.1852 1.8337 38 1 -0.9106 -2.6564 2.7818 39 1 -3.2541 -4.2319 2.8291 40 1 -2.2634 -4.6574 4.2452 41 1 -5.5686 -3.8791 5.6713 42 1 3.1615 -4.7103 1.5834 43 1 2.3037 -5.9698 2.5033 44 1 3.1192 -6.3829 0.9761 45 1 2.2943 -5.5089 -1.1540 46 1 0.7099 -4.7026 -1.2607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:32 Heat of formation + Delta-G solvation = -45.642269 kcal Electronic energy + Delta-G solvation = -27470.913745 eV Core-core repulsion = 23746.588917 eV Total energy + Delta-G solvation = -3724.324828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67664 -39.39140 -38.07057 -34.79568 -34.36086 -33.65115 -32.67504 -32.12300 -30.80138 -28.27417 -27.08395 -26.84980 -26.24861 -24.11922 -23.01723 -22.04737 -21.06011 -20.54788 -18.95462 -18.25536 -16.79783 -16.73387 -16.19975 -15.90197 -15.51082 -15.32629 -14.87345 -14.71011 -14.55778 -14.31761 -14.11317 -13.67922 -13.49499 -13.23497 -13.05267 -12.88329 -12.55149 -12.40655 -12.27130 -12.08687 -11.97333 -11.81125 -11.53403 -11.44300 -11.17597 -11.05749 -10.92682 -10.92021 -10.47416 -10.30544 -10.05390 -9.43154 -9.35693 -8.95859 -8.78896 -8.74725 -8.34300 -7.75799 -6.16760 -4.23392 1.15519 1.27541 2.99930 3.22891 3.30290 3.33148 3.48626 3.62515 3.84524 4.29452 4.55835 4.60945 4.68437 4.71218 4.82503 4.90154 4.95026 4.97455 5.13676 5.16461 5.19595 5.24794 5.39653 5.43891 5.50870 5.57309 5.57672 5.61225 5.69192 5.71596 5.81141 5.92339 6.01600 6.07580 6.22622 6.32511 6.38788 6.48440 6.66884 6.86164 7.03382 7.09555 7.47784 7.51126 7.55270 7.82238 7.99903 8.72815 8.86302 9.27588 9.45226 10.93518 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.004131 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.501202 B = 6776.972785 C = 8754.722119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.120 3.880 9 H 0.076 0.924 10 C 0.093 3.907 11 N -0.636 5.636 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.120 3.880 25 H 0.109 0.891 26 C -0.155 4.155 27 C 0.055 3.945 28 O -0.372 6.372 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.385 0.615 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.920 7.040 -12.374 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.084 4.084 8 C 0.062 3.938 9 H 0.094 0.906 10 C -0.032 4.032 11 N -0.377 5.377 12 C 0.401 3.599 13 O -0.474 6.474 14 N -0.382 5.382 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.016 3.984 25 H 0.127 0.873 26 C -0.213 4.213 27 C -0.023 4.023 28 O -0.290 6.290 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.219 0.781 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.493 6.152 -12.349 22.279 hybrid contribution -0.441 1.218 0.686 1.466 sum 17.053 7.370 -11.663 21.935 Atomic orbital electron populations 1.20972 0.90875 1.03190 1.03295 1.19716 0.96174 0.92265 0.98881 1.20981 0.94244 0.97300 1.01506 1.21150 0.94316 0.98058 0.99771 1.21136 0.99836 0.92482 1.01504 1.20990 0.93419 0.98383 0.97677 1.19326 0.93971 0.92468 1.02662 1.21214 0.93100 0.85595 0.93930 0.90634 1.22149 0.99937 0.84642 0.96423 1.47430 1.22377 1.08687 1.59157 1.16032 0.79726 0.85178 0.78982 1.90861 1.66268 1.22986 1.67296 1.45884 1.30609 1.11045 1.50634 1.19006 0.79734 0.96559 0.90187 1.21237 1.10839 0.95648 1.30213 0.91992 1.24933 0.96186 0.96517 0.96296 1.69989 1.18041 1.25123 1.39061 0.86376 0.78731 0.82509 0.79379 1.19651 1.20788 1.20791 1.21635 0.93396 0.92075 0.91336 0.87331 1.22030 0.96824 1.01701 1.00781 1.23040 0.98353 0.85079 0.95784 1.87890 1.40258 1.18488 1.82385 0.90212 0.91179 0.91169 0.85902 0.86206 0.86158 0.85296 0.90816 0.89240 0.78093 0.95624 0.95796 0.92506 0.92112 0.92238 0.91721 0.87667 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.49 36.01 0.34 -0.93 16 2 C -0.07 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.11 -1.04 10.05 -39.59 -0.40 -1.44 16 5 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.09 -0.92 9.35 -39.58 -0.37 -1.29 16 7 C -0.08 -0.95 5.07 -104.62 -0.53 -1.48 16 8 C 0.12 1.44 2.49 -27.73 -0.07 1.38 16 9 H 0.08 0.94 6.16 -51.93 -0.32 0.62 16 10 C 0.09 1.24 5.45 -3.53 -0.02 1.22 16 11 N -0.64 -10.19 2.71 -170.43 -0.46 -10.65 16 12 C 0.70 14.75 8.31 -86.92 -0.72 14.02 16 13 O -0.60 -14.88 15.82 5.29 0.08 -14.80 16 14 N -0.73 -15.83 5.46 -66.41 -0.36 -16.19 16 15 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 16 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.12 1.63 3.25 -67.42 -0.22 1.41 16 25 H 0.11 1.65 7.06 -51.93 -0.37 1.29 16 26 C -0.15 -1.82 9.25 37.16 0.34 -1.47 16 27 C 0.05 0.61 6.36 37.31 0.24 0.85 16 28 O -0.37 -4.44 8.88 -35.23 -0.31 -4.75 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.07 0.73 6.03 -51.93 -0.31 0.41 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.33 7.36 -52.49 -0.39 0.94 16 36 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 37 H 0.09 1.19 5.66 -51.93 -0.29 0.90 16 38 H 0.38 7.29 5.88 -40.82 -0.24 7.05 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.06 0.70 7.20 -51.93 -0.37 0.33 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -32.63 370.01 -9.88 -42.51 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.87 Total: 6.37 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.25 Total: 1.50 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.09 Total: -52.14 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.23 Total: -19.55 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.63 -9.88 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds