Wall clock time and date at job start Tue Mar 31 2020 12:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 119.99771 * 2 1 4 4 C 1.38215 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99595 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00314 * 359.82074 * 5 4 3 7 7 C 1.38211 * 120.00105 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99949 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.51228 * 34.90425 * 8 7 2 10 10 C 1.53294 * 109.55467 * 274.77496 * 8 7 2 11 11 N 1.47228 * 108.40221 * 187.74651 * 10 8 7 12 12 C 1.34777 * 121.03101 * 230.57830 * 11 10 8 13 13 O 1.21582 * 119.99979 * 185.69637 * 12 11 10 14 14 N 1.34771 * 119.99790 * 5.70023 * 12 11 10 15 15 C 1.46504 * 119.99914 * 185.11384 * 14 12 11 16 16 C 1.50700 * 109.47084 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99992 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99672 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46989 * 60.00277 * 20 18 16 22 22 H 1.48494 * 109.47101 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47243 * 300.00529 * 20 18 16 24 24 C 1.47154 * 117.98862 * 50.51494 * 11 10 8 25 25 H 1.09000 * 109.68334 * 69.21969 * 24 11 10 26 26 C 1.52997 * 109.68153 * 189.74149 * 24 11 10 27 27 C 1.53299 * 108.41426 * 309.47834 * 24 11 10 28 28 O 1.42965 * 109.22264 * 52.32399 * 27 24 11 29 29 H 1.09004 * 109.47597 * 269.97888 * 1 2 3 30 30 H 1.08997 * 109.47295 * 29.98047 * 1 2 3 31 31 H 1.09005 * 109.46758 * 149.98028 * 1 2 3 32 32 H 1.07995 * 120.00286 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.00079 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.99679 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00007 * 180.22663 * 6 5 4 36 36 H 1.09002 * 109.67933 * 307.47089 * 10 8 7 37 37 H 1.08993 * 109.68084 * 67.99159 * 10 8 7 38 38 H 0.96994 * 120.00283 * 5.11066 * 14 12 11 39 39 H 1.09000 * 109.47024 * 299.99679 * 15 14 12 40 40 H 1.08998 * 109.47190 * 59.99459 * 15 14 12 41 41 H 0.96997 * 119.99871 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47032 * 170.87187 * 26 24 11 43 43 H 1.08998 * 109.46895 * 290.86426 * 26 24 11 44 44 H 1.08994 * 109.47742 * 50.86846 * 26 24 11 45 45 H 1.08995 * 109.51500 * 172.24199 * 27 24 11 46 46 H 1.08994 * 109.51836 * 292.34829 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0016 6 6 3.5806 -1.1969 0.0059 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5326 -2.3959 -0.5880 10 6 1.0844 -2.8866 1.4390 11 7 0.5188 -4.2459 1.4294 12 6 -0.6527 -4.5153 2.0389 13 8 -1.0519 -5.6615 2.1093 14 7 -1.3816 -3.5140 2.5704 15 6 -2.5974 -3.8163 3.3300 16 6 -3.2205 -2.5318 3.8126 17 1 -2.7575 -1.5850 3.5768 18 6 -4.3823 -2.5654 4.5544 19 7 -4.9463 -3.7183 4.8411 20 14 -5.1551 -0.9733 5.1521 21 1 -5.4989 -0.1214 3.9853 22 1 -6.3880 -1.2796 5.9210 23 1 -4.1931 -0.2530 6.0244 24 6 1.2705 -5.3017 0.7326 25 1 2.1852 -5.5247 1.2819 26 6 0.4112 -6.5633 0.6291 27 6 1.6215 -4.7995 -0.6726 28 8 2.2633 -3.5261 -0.5706 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6582 2.1326 -0.0004 33 1 4.1203 2.1327 0.0010 34 1 5.3516 0.0001 0.0024 35 1 4.1206 -2.1322 0.0104 36 1 1.9804 -2.8664 2.0595 37 1 0.3490 -2.1854 1.8332 38 1 -1.1013 -2.5932 2.4501 39 1 -3.3036 -4.3451 2.6899 40 1 -2.3447 -4.4414 4.1863 41 1 -5.7634 -3.7419 5.3633 42 1 0.9023 -7.2849 -0.0239 43 1 0.2837 -6.9984 1.6203 44 1 -0.5645 -6.3057 0.2171 45 1 2.2942 -5.5085 -1.1552 46 1 0.7104 -4.7025 -1.2628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:38 Heat of formation + Delta-G solvation = -32.901906 kcal Electronic energy + Delta-G solvation = -27501.862053 eV Core-core repulsion = 23778.089689 eV Total energy + Delta-G solvation = -3723.772365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69311 -39.47448 -38.01886 -34.88699 -34.40992 -33.58690 -32.75217 -32.12278 -30.82487 -28.14269 -27.07844 -26.71601 -26.18014 -23.64426 -23.13864 -21.98514 -21.25595 -20.70640 -19.34855 -17.83481 -16.78879 -16.72474 -16.22057 -15.94804 -15.46446 -15.25500 -15.00564 -14.77230 -14.52817 -14.31942 -14.05846 -13.74794 -13.48397 -13.23701 -13.06241 -12.77944 -12.42599 -12.30064 -12.18706 -12.05787 -11.97641 -11.77088 -11.56880 -11.26168 -11.09016 -11.04343 -10.95871 -10.88134 -10.69128 -10.27527 -10.14935 -9.39663 -8.98946 -8.80921 -8.73371 -8.72270 -8.28032 -7.75073 -6.16608 -4.23353 1.15588 1.27749 3.00524 3.24433 3.29710 3.31048 3.47582 3.63145 3.85098 4.29143 4.54915 4.61261 4.66533 4.70836 4.82009 4.90653 4.97310 5.04178 5.13044 5.16458 5.19553 5.24618 5.37600 5.43404 5.55810 5.59325 5.62249 5.65360 5.72239 5.79911 5.90425 5.92833 6.07587 6.30996 6.35736 6.38910 6.48093 6.53178 6.86189 6.87424 7.03904 7.08562 7.48884 7.52333 7.55512 7.82246 8.00350 8.72915 8.86710 9.29444 9.45723 10.93557 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.004292 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.298168 B = 6522.347491 C = 8781.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.119 3.881 9 H 0.077 0.923 10 C 0.093 3.907 11 N -0.640 5.640 12 C 0.699 3.301 13 O -0.587 6.587 14 N -0.730 5.730 15 C 0.267 3.733 16 C -0.542 4.542 17 H 0.060 0.940 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.129 3.871 25 H 0.072 0.928 26 C -0.134 4.134 27 C 0.052 3.948 28 O -0.374 6.374 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.383 0.617 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.275 6.488 -12.072 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.085 4.085 8 C 0.061 3.939 9 H 0.094 0.906 10 C -0.031 4.031 11 N -0.380 5.380 12 C 0.400 3.600 13 O -0.466 6.466 14 N -0.384 5.384 15 C 0.146 3.854 16 C -0.581 4.581 17 H 0.079 0.921 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.025 3.975 25 H 0.090 0.910 26 C -0.191 4.191 27 C -0.026 4.026 28 O -0.293 6.293 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.217 0.783 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.925 5.562 -11.913 21.432 hybrid contribution -0.507 1.347 0.435 1.504 sum 16.418 6.909 -11.478 21.191 Atomic orbital electron populations 1.20978 0.90843 1.03241 1.03312 1.19715 0.96189 0.92250 0.98863 1.20983 0.94244 0.97303 1.01496 1.21155 0.94320 0.98056 0.99757 1.21137 0.99844 0.92472 1.01501 1.20993 0.93429 0.98404 0.97664 1.19325 0.93982 0.92458 1.02720 1.21235 0.93129 0.85602 0.93971 0.90587 1.22184 0.99931 0.84609 0.96359 1.47469 1.22435 1.08821 1.59309 1.16060 0.79582 0.85678 0.78641 1.90895 1.71909 1.19246 1.64541 1.45969 1.28395 1.07067 1.56947 1.18978 0.79470 0.96622 0.90289 1.21161 1.09499 0.92264 1.35156 0.92139 1.24924 0.96593 0.96681 0.95664 1.69961 1.19698 1.24538 1.38024 0.86496 0.78660 0.82985 0.78895 1.20077 1.21051 1.20076 1.21691 0.95156 0.88514 0.92129 0.90974 1.22067 0.98951 0.94362 1.03765 1.23156 0.98380 0.84880 0.96162 1.87899 1.40348 1.18612 1.82443 0.90193 0.91137 0.91151 0.85879 0.86188 0.86142 0.85293 0.90788 0.89115 0.78258 0.95636 0.95841 0.92394 0.94092 0.89688 0.91373 0.87707 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.49 36.00 0.34 -0.94 16 2 C -0.07 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.09 -0.94 9.35 -39.58 -0.37 -1.31 16 7 C -0.08 -0.97 5.07 -104.62 -0.53 -1.50 16 8 C 0.12 1.45 2.49 -27.73 -0.07 1.38 16 9 H 0.08 0.95 6.16 -51.93 -0.32 0.63 16 10 C 0.09 1.26 5.92 -3.49 -0.02 1.24 16 11 N -0.64 -10.27 3.02 -170.37 -0.52 -10.79 16 12 C 0.70 14.41 8.08 -86.92 -0.70 13.71 16 13 O -0.59 -13.89 12.13 5.29 0.06 -13.83 16 14 N -0.73 -15.66 5.45 -66.41 -0.36 -16.02 16 15 C 0.27 7.09 5.43 -5.19 -0.03 7.06 16 16 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 17 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.13 1.78 3.68 -67.42 -0.25 1.53 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.13 -1.99 7.64 37.16 0.28 -1.71 16 27 C 0.05 0.59 6.28 37.31 0.23 0.83 16 28 O -0.37 -4.63 9.23 -35.23 -0.33 -4.95 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.07 0.73 6.03 -51.93 -0.31 0.42 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.36 7.36 -52.49 -0.39 0.97 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.22 5.54 -51.93 -0.29 0.93 16 38 H 0.38 7.19 5.87 -40.82 -0.24 6.95 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 43 H 0.08 1.49 6.64 -51.93 -0.34 1.15 16 44 H 0.07 1.17 6.96 -51.93 -0.36 0.81 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -31.67 365.66 -10.09 -41.76 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.86 Total: 6.83 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.32 Total: 1.02 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.14 Total: -52.00 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.26 Total: -18.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.67 -10.09 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.859 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds