Wall clock time and date at job start Tue Mar 31 2020 12:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 119.99771 * 2 1 4 4 C 1.38215 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99595 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00314 * 359.82074 * 5 4 3 7 7 C 1.38211 * 120.00105 * 180.02562 * 2 1 3 8 8 C 1.50703 * 119.99949 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.51228 * 34.90425 * 8 7 2 10 10 C 1.53294 * 109.55467 * 274.77496 * 8 7 2 11 11 N 1.47228 * 108.40221 * 187.74651 * 10 8 7 12 12 C 1.34777 * 121.03101 * 230.57830 * 11 10 8 13 13 O 1.21582 * 119.99979 * 185.69637 * 12 11 10 14 14 N 1.34771 * 119.99790 * 5.70023 * 12 11 10 15 15 C 1.46504 * 119.99914 * 185.11384 * 14 12 11 16 16 C 1.50700 * 109.47084 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99992 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99672 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46989 * 60.00277 * 20 18 16 22 22 H 1.48494 * 109.47101 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47243 * 300.00529 * 20 18 16 24 24 C 1.47154 * 117.98862 * 50.51494 * 11 10 8 25 25 H 1.09000 * 109.68334 * 69.21969 * 24 11 10 26 26 C 1.52997 * 109.68153 * 189.74149 * 24 11 10 27 27 C 1.53299 * 108.41426 * 309.47834 * 24 11 10 28 28 O 1.42965 * 109.22264 * 52.32399 * 27 24 11 29 29 H 1.09004 * 109.47597 * 269.97888 * 1 2 3 30 30 H 1.08997 * 109.47295 * 29.98047 * 1 2 3 31 31 H 1.09005 * 109.46758 * 149.98028 * 1 2 3 32 32 H 1.07995 * 120.00286 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.00079 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.99679 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00007 * 180.22663 * 6 5 4 36 36 H 1.09002 * 109.67933 * 307.47089 * 10 8 7 37 37 H 1.08993 * 109.68084 * 67.99159 * 10 8 7 38 38 H 0.96994 * 120.00283 * 5.11066 * 14 12 11 39 39 H 1.09000 * 109.47024 * 299.99679 * 15 14 12 40 40 H 1.08998 * 109.47190 * 59.99459 * 15 14 12 41 41 H 0.96997 * 119.99871 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47032 * 170.87187 * 26 24 11 43 43 H 1.08998 * 109.46895 * 290.86426 * 26 24 11 44 44 H 1.08994 * 109.47742 * 50.86846 * 26 24 11 45 45 H 1.08995 * 109.51500 * 172.24199 * 27 24 11 46 46 H 1.08994 * 109.51836 * 292.34829 * 27 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0016 6 6 3.5806 -1.1969 0.0059 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5326 -2.3959 -0.5880 10 6 1.0844 -2.8866 1.4390 11 7 0.5188 -4.2459 1.4294 12 6 -0.6527 -4.5153 2.0389 13 8 -1.0519 -5.6615 2.1093 14 7 -1.3816 -3.5140 2.5704 15 6 -2.5974 -3.8163 3.3300 16 6 -3.2205 -2.5318 3.8126 17 1 -2.7575 -1.5850 3.5768 18 6 -4.3823 -2.5654 4.5544 19 7 -4.9463 -3.7183 4.8411 20 14 -5.1551 -0.9733 5.1521 21 1 -5.4989 -0.1214 3.9853 22 1 -6.3880 -1.2796 5.9210 23 1 -4.1931 -0.2530 6.0244 24 6 1.2705 -5.3017 0.7326 25 1 2.1852 -5.5247 1.2819 26 6 0.4112 -6.5633 0.6291 27 6 1.6215 -4.7995 -0.6726 28 8 2.2633 -3.5261 -0.5706 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6582 2.1326 -0.0004 33 1 4.1203 2.1327 0.0010 34 1 5.3516 0.0001 0.0024 35 1 4.1206 -2.1322 0.0104 36 1 1.9804 -2.8664 2.0595 37 1 0.3490 -2.1854 1.8332 38 1 -1.1013 -2.5932 2.4501 39 1 -3.3036 -4.3451 2.6899 40 1 -2.3447 -4.4414 4.1863 41 1 -5.7634 -3.7419 5.3633 42 1 0.9023 -7.2849 -0.0239 43 1 0.2837 -6.9984 1.6203 44 1 -0.5645 -6.3057 0.2171 45 1 2.2942 -5.5085 -1.1552 46 1 0.7104 -4.7025 -1.2628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:37 Heat of formation + Delta-G solvation = -52.201569 kcal Electronic energy + Delta-G solvation = -27502.698950 eV Core-core repulsion = 23778.089689 eV Total energy + Delta-G solvation = -3724.609261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.91788 -40.54358 -39.19034 -36.52536 -35.83666 -34.91056 -34.17108 -33.30647 -31.92881 -29.51867 -28.55656 -27.78775 -27.22551 -24.96958 -24.64582 -23.11824 -22.45545 -21.57139 -20.94891 -19.30178 -18.11999 -17.79511 -17.50912 -17.39259 -16.94425 -16.46175 -16.20049 -16.00636 -15.66131 -15.49964 -15.20519 -14.99596 -14.72727 -14.61944 -14.03917 -13.94843 -13.86072 -13.77223 -13.42788 -13.21458 -13.13911 -12.93828 -12.87757 -12.72912 -12.67873 -12.29995 -12.19372 -12.08713 -11.83500 -11.66824 -11.48609 -11.21302 -10.78370 -10.38967 -9.98214 -9.73034 -9.55598 -9.30316 -8.28112 -6.44601 0.38414 0.52597 1.42785 1.47284 1.54630 1.62600 2.17350 2.37908 2.55641 2.84127 3.06878 3.07287 3.61098 3.68322 3.81265 3.93734 4.01009 4.07900 4.11024 4.15935 4.23480 4.30785 4.46553 4.52086 4.64070 4.68696 4.72885 4.78864 4.82230 4.88304 4.95907 5.02714 5.10559 5.17922 5.27371 5.28192 5.31641 5.45444 5.56345 5.64757 5.66143 5.69104 5.71643 5.84339 6.03739 6.06722 6.14713 6.66061 7.12049 7.25457 7.67447 8.83926 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.004292 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.298168 B = 6522.347491 C = 8781.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.100 4.100 8 C 0.128 3.872 9 H 0.071 0.929 10 C 0.093 3.907 11 N -0.632 5.632 12 C 0.694 3.306 13 O -0.624 6.624 14 N -0.726 5.726 15 C 0.288 3.712 16 C -0.555 4.555 17 H 0.081 0.919 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.123 3.877 25 H 0.087 0.913 26 C -0.125 4.125 27 C 0.059 3.941 28 O -0.374 6.374 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.397 0.603 39 H -0.013 1.013 40 H -0.015 1.015 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.140 0.860 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.222 9.158 -13.016 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.116 4.116 7 C -0.101 4.101 8 C 0.070 3.930 9 H 0.088 0.912 10 C -0.030 4.030 11 N -0.371 5.371 12 C 0.396 3.604 13 O -0.505 6.505 14 N -0.382 5.382 15 C 0.165 3.835 16 C -0.593 4.593 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.187 1.187 24 C 0.020 3.980 25 H 0.105 0.895 26 C -0.182 4.182 27 C -0.019 4.019 28 O -0.293 6.293 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.234 0.766 39 H 0.005 0.995 40 H 0.003 0.997 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.157 0.843 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.946 8.262 -12.901 24.365 hybrid contribution -1.013 0.468 0.683 1.308 sum 17.933 8.730 -12.217 23.390 Atomic orbital electron populations 1.20979 0.90784 1.03542 1.03073 1.19853 0.96437 0.92582 0.99277 1.21269 0.94854 0.97567 1.01002 1.21507 0.94253 0.99057 0.98442 1.21432 1.01062 0.92082 1.00634 1.21108 0.93216 0.99153 0.98103 1.19320 0.94404 0.92092 1.04268 1.21106 0.93209 0.86201 0.92527 0.91161 1.22356 0.99871 0.82912 0.97908 1.47479 1.20830 1.10724 1.58088 1.16235 0.80649 0.84819 0.78677 1.90890 1.73204 1.20618 1.65806 1.45598 1.27420 1.08199 1.56967 1.18390 0.80474 0.96065 0.88547 1.21525 1.09861 0.92751 1.35128 0.90109 1.26015 0.97074 1.00621 0.95536 1.70128 1.20305 1.27466 1.38906 0.85243 0.77513 0.78009 0.78692 1.18571 1.21067 1.18698 1.21984 0.94806 0.87495 0.93732 0.89524 1.21868 0.98190 0.95731 1.02419 1.23212 0.99172 0.85199 0.94287 1.87915 1.40413 1.18756 1.82216 0.90666 0.89778 0.91962 0.84173 0.83682 0.83995 0.85270 0.89968 0.89306 0.76563 0.99549 0.99730 0.92237 0.90190 0.92974 0.94309 0.84255 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.49 71.23 0.68 -1.76 16 2 C -0.08 -1.64 5.88 -19.87 -0.12 -1.75 16 3 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 4 C -0.11 -1.75 10.05 22.27 0.22 -1.53 16 5 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 6 C -0.10 -1.93 9.35 22.27 0.21 -1.72 16 7 C -0.10 -2.17 5.07 -19.86 -0.10 -2.27 16 8 C 0.13 2.99 2.49 29.95 0.07 3.07 16 9 H 0.07 1.73 6.16 -2.39 -0.01 1.71 16 10 C 0.09 2.44 5.92 86.34 0.51 2.96 16 11 N -0.63 -20.42 3.02 -811.20 -2.45 -22.87 16 12 C 0.69 29.84 8.08 179.06 1.45 31.28 16 13 O -0.62 -31.33 12.13 -3.97 -0.05 -31.38 16 14 N -0.73 -32.37 5.45 -482.30 -2.63 -35.00 16 15 C 0.29 16.11 5.43 85.63 0.47 16.57 16 16 C -0.55 -30.30 9.28 25.60 0.24 -30.06 16 17 H 0.08 3.99 7.60 -2.91 -0.02 3.96 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 20 Si 0.98 42.11 29.54 68.60 2.03 44.14 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 C 0.12 3.28 3.68 44.97 0.17 3.45 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 C -0.12 -3.74 7.64 71.98 0.55 -3.19 16 27 C 0.06 1.22 6.28 72.08 0.45 1.68 16 28 O -0.37 -8.53 9.23 -148.98 -1.38 -9.91 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.06 1.27 6.03 -2.38 -0.01 1.25 16 32 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.13 2.47 7.36 -2.91 -0.02 2.45 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 2.36 5.54 -2.39 -0.01 2.34 16 38 H 0.40 15.15 5.87 -92.71 -0.54 14.61 16 39 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.08 1.74 8.13 -2.39 -0.02 1.72 16 43 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16 44 H 0.04 1.38 6.96 -2.39 -0.02 1.36 16 45 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.65 365.66 1.95 -69.71 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.44 Total: 27.50 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.70 Total: 13.64 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.79 Total: -113.70 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.42 Total: -41.29 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -71.65 1.95 -69.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.506 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds