Wall clock time and date at job start Tue Mar 31 2020 12:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47385 * 269.99971 * 3 2 1 5 5 H 1.48502 * 109.47079 * 30.00487 * 3 2 1 6 6 H 1.48509 * 109.46911 * 150.00204 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00093 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47070 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.46736 * 179.97438 * 10 9 7 12 12 C 1.34234 * 116.99949 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99681 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00391 * 180.02562 * 12 11 10 15 15 H 1.09008 * 109.44835 * 27.61805 * 14 12 11 16 16 C 1.53037 * 109.46361 * 267.64586 * 14 12 11 17 17 C 1.53118 * 109.30880 * 180.77978 * 16 14 12 18 18 C 1.53206 * 109.11497 * 57.63801 * 17 16 14 19 19 C 1.53037 * 109.30027 * 302.36660 * 18 17 16 20 20 N 1.46842 * 109.46578 * 147.58797 * 14 12 11 21 21 C 1.46899 * 111.00232 * 305.86029 * 20 14 12 22 22 C 1.50695 * 109.47515 * 183.58419 * 21 20 14 23 23 C 1.38225 * 119.61773 * 94.99564 * 22 21 20 24 24 C 1.38629 * 119.16265 * 179.97438 * 23 22 21 25 25 C 1.38682 * 118.41884 * 0.02562 * 24 23 22 26 26 C 1.38182 * 119.16207 * 359.97438 * 25 24 23 27 27 N 1.31853 * 119.61781 * 274.72655 * 22 21 20 28 28 H 0.97002 * 120.00424 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99473 * 9 7 2 30 30 H 1.09001 * 109.46714 * 299.99648 * 9 7 2 31 31 H 1.09001 * 109.46766 * 59.99872 * 10 9 7 32 32 H 1.09001 * 109.47290 * 299.99571 * 10 9 7 33 33 H 1.08993 * 109.50276 * 300.73921 * 16 14 12 34 34 H 1.08996 * 109.50164 * 60.82160 * 16 14 12 35 35 H 1.08999 * 109.52219 * 177.57418 * 17 16 14 36 36 H 1.08998 * 109.52575 * 297.76873 * 17 16 14 37 37 H 1.09001 * 109.49152 * 182.41604 * 18 17 16 38 38 H 1.09004 * 109.52362 * 62.33595 * 18 17 16 39 39 H 1.09001 * 109.45747 * 299.16883 * 19 18 17 40 40 H 1.08997 * 109.45807 * 179.19075 * 19 18 17 41 41 H 1.09005 * 109.47355 * 303.58522 * 21 20 14 42 42 H 1.09002 * 109.47446 * 63.58045 * 21 20 14 43 43 H 1.08003 * 120.42269 * 0.02562 * 23 22 21 44 44 H 1.07998 * 120.79587 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.41475 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.61756 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4735 -2.6366 -0.0022 12 6 6.0829 -3.8326 -0.0017 13 8 5.4248 -4.8459 -0.0008 14 6 7.5878 -3.9116 -0.0022 15 1 7.9981 -3.0208 0.4735 16 6 8.0933 -3.9983 -1.4441 17 6 9.6212 -4.0980 -1.4398 18 6 10.0419 -5.3211 -0.6186 19 6 9.4799 -5.1959 0.7994 20 7 8.0155 -5.1039 0.7404 21 6 7.4323 -5.1219 2.0885 22 6 7.9617 -6.3102 2.8492 23 6 9.0556 -6.1572 3.6802 24 6 9.5345 -7.2565 4.3759 25 6 8.8925 -8.4743 4.2085 26 6 7.8043 -8.5509 3.3604 27 7 7.3728 -7.4826 2.7185 28 1 -0.4851 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.6577 -3.1506 -0.8907 32 1 3.6585 -3.1503 0.8893 33 1 7.6724 -4.8814 -1.9247 34 1 7.7884 -3.1061 -1.9909 35 1 9.9823 -4.2033 -2.4628 36 1 10.0438 -3.1974 -0.9942 37 1 11.1298 -5.3736 -0.5756 38 1 9.6521 -6.2253 -1.0861 39 1 9.8814 -4.2992 1.2712 40 1 9.7656 -6.0718 1.3818 41 1 7.7017 -4.2052 2.6133 42 1 6.3471 -5.1923 2.0141 43 1 9.5309 -5.1932 3.7868 44 1 10.3872 -7.1668 5.0325 45 1 9.2387 -9.3518 4.7345 46 1 7.2991 -9.4957 3.2243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790076033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:40 Heat of formation + Delta-G solvation = -73.115441 kcal Electronic energy + Delta-G solvation = -26686.976901 eV Core-core repulsion = 22961.460746 eV Total energy + Delta-G solvation = -3725.516155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00892 -41.14418 -39.58723 -37.61435 -35.43615 -35.23381 -33.37782 -33.06565 -32.42262 -31.77646 -28.13945 -27.37836 -25.35465 -24.78899 -24.25216 -22.75890 -22.45218 -21.96701 -20.66582 -19.30478 -18.51030 -17.84419 -17.81336 -17.56876 -17.15094 -16.62338 -16.47665 -16.31561 -15.57896 -15.40753 -15.23696 -15.04086 -14.89631 -14.62044 -14.35187 -14.16115 -13.93589 -13.89099 -13.55347 -13.31977 -13.16547 -13.01149 -12.61577 -12.54125 -12.45577 -12.32019 -11.98482 -11.82183 -11.65537 -11.57584 -11.46959 -11.41813 -11.13774 -10.82859 -10.79620 -10.30519 -9.99330 -9.40682 -8.35903 -6.44763 0.10765 0.39275 1.09622 1.37205 1.39260 1.51769 1.54652 2.33471 2.55697 2.98721 3.04615 3.25494 3.55047 3.66084 3.77600 3.89782 3.98880 4.03597 4.11106 4.12902 4.14171 4.15837 4.22879 4.23599 4.36121 4.47134 4.52542 4.58278 4.69489 4.74724 4.75457 4.84928 4.91891 4.99765 5.01539 5.14161 5.19512 5.22533 5.25698 5.26102 5.42876 5.46682 5.52074 5.72274 5.80665 5.96723 6.13766 6.61195 6.73305 7.12917 7.20325 8.80467 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002945 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.744849 B = 9505.549311 C =10561.760731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.095 3.905 11 O -0.360 6.360 12 C 0.452 3.548 13 O -0.523 6.523 14 C 0.106 3.894 15 H 0.096 0.904 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.056 3.944 20 N -0.526 5.526 21 C 0.095 3.905 22 C 0.118 3.882 23 C -0.165 4.165 24 C -0.073 4.073 25 C -0.167 4.167 26 C 0.079 3.921 27 N -0.510 5.510 28 H 0.271 0.729 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.154 0.846 44 H 0.170 0.830 45 H 0.166 0.834 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.178 -11.651 6.172 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.583 4.583 8 H 0.050 0.950 9 C -0.038 4.038 10 C 0.021 3.979 11 O -0.277 6.277 12 C 0.294 3.706 13 O -0.410 6.410 14 C -0.003 4.003 15 H 0.113 0.887 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.070 4.070 20 N -0.254 5.254 21 C -0.033 4.033 22 C -0.020 4.020 23 C -0.186 4.186 24 C -0.099 4.099 25 C -0.187 4.187 26 C -0.077 4.077 27 N -0.220 5.220 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.172 0.828 44 H 0.188 0.812 45 H 0.184 0.816 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 29.874 -12.307 5.363 32.752 hybrid contribution -0.356 0.923 0.877 1.322 sum 29.518 -11.384 6.241 32.247 Atomic orbital electron populations 1.70048 1.08413 1.28706 1.51286 1.25990 0.95699 1.03704 0.93298 0.85567 0.79518 0.77404 0.79658 1.18598 1.20536 1.16607 1.21115 0.90770 0.93765 1.52631 0.94981 1.19446 0.94098 0.91676 0.98572 1.22923 0.74226 0.99952 1.00789 1.86471 1.24344 1.33502 1.83354 1.24332 0.93025 0.81096 0.72104 1.90670 1.67898 1.37376 1.45091 1.21350 0.85100 0.94321 0.99508 0.88665 1.21628 0.98557 1.03190 0.91177 1.21580 0.92133 0.99002 1.01945 1.21652 1.01352 0.98515 0.93838 1.22309 0.83898 1.01861 0.98939 1.61647 1.11043 1.38052 1.14641 1.21039 0.99600 0.94501 0.88169 1.20892 0.93330 0.92438 0.95338 1.22214 0.96833 1.01779 0.97735 1.22007 0.99346 0.91647 0.96854 1.22528 0.96506 1.00208 0.99411 1.23187 0.94925 0.96840 0.92783 1.67444 1.31645 1.00087 1.22818 0.91991 0.94557 0.94499 0.92728 0.92978 0.92119 0.89579 0.89448 0.89918 0.88546 0.92618 0.92341 0.90401 0.91456 0.92275 0.82795 0.81230 0.81618 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.01 0.65 5.47 84.66 0.46 1.11 16 3 Si 0.96 43.67 27.47 68.60 1.88 45.56 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.55 -32.31 9.66 25.60 0.25 -32.06 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C 0.00 -0.02 4.42 29.85 0.13 0.11 16 10 C 0.09 4.27 5.40 71.98 0.39 4.66 16 11 O -0.36 -13.94 10.22 -51.46 -0.53 -14.46 16 12 C 0.45 16.18 5.99 71.23 0.43 16.60 16 13 O -0.52 -22.67 15.16 21.96 0.33 -22.34 16 14 C 0.11 2.69 2.33 44.19 0.10 2.80 16 15 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 16 C -0.11 -2.25 5.35 30.65 0.16 -2.08 16 17 C -0.11 -1.47 6.01 30.70 0.18 -1.28 16 18 C -0.12 -1.62 6.09 30.68 0.19 -1.43 16 19 C 0.06 0.94 4.88 86.33 0.42 1.36 16 20 N -0.53 -13.14 4.36 -880.07 -3.84 -16.98 16 21 C 0.09 2.54 4.92 85.56 0.42 2.96 16 22 C 0.12 2.85 5.11 42.55 0.22 3.07 16 23 C -0.17 -2.61 8.16 22.36 0.18 -2.43 16 24 C -0.07 -0.85 10.18 22.47 0.23 -0.62 16 25 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 26 C 0.08 1.58 11.18 84.67 0.95 2.53 16 27 N -0.51 -14.27 10.27 -183.89 -1.89 -16.16 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.04 1.70 7.20 -2.39 -0.02 1.69 16 30 H 0.04 1.70 7.57 -2.39 -0.02 1.69 16 31 H 0.05 2.54 8.13 -2.39 -0.02 2.52 16 32 H 0.05 2.44 8.13 -2.39 -0.02 2.42 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.35 5.81 -2.39 -0.01 1.34 16 41 H 0.07 1.49 8.04 -2.38 -0.02 1.47 16 42 H 0.06 2.11 6.23 -2.39 -0.01 2.09 16 43 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 45 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -78.71 372.25 2.10 -76.61 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.90 Total: 13.70 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.94 Total: -6.64 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -5.43 Total: -92.43 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.19 Total: -36.80 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -78.71 2.10 -76.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790076033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.492 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds