Wall clock time and date at job start Tue Mar 31 2020 12:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48496 * 109.47063 * 239.99796 * 3 2 1 5 5 H 1.48500 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47457 * 119.99872 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47113 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99971 * 180.02562 * 11 10 9 13 13 O 1.20819 * 120.00077 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99958 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46477 * 329.49431 * 14 12 11 16 16 C 1.53035 * 109.45520 * 89.46610 * 14 12 11 17 17 C 1.53206 * 109.29883 * 179.19011 * 16 14 12 18 18 C 1.53114 * 109.11672 * 302.36898 * 17 16 14 19 19 C 1.53035 * 109.30934 * 57.63703 * 18 17 16 20 20 N 1.46839 * 109.52678 * 300.79794 * 19 18 17 21 21 C 1.46904 * 111.00347 * 185.83686 * 20 19 18 22 22 C 1.50694 * 109.47087 * 295.70394 * 21 20 19 23 23 C 1.38234 * 119.61830 * 94.72856 * 22 21 20 24 24 C 1.38627 * 119.16149 * 179.75313 * 23 22 21 25 25 C 1.38666 * 118.41829 * 0.50691 * 24 23 22 26 26 C 1.38176 * 119.16769 * 359.73060 * 25 24 23 27 27 N 1.31850 * 119.61931 * 274.99545 * 22 21 20 28 28 H 0.96996 * 120.00410 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47121 * 60.00320 * 9 7 2 30 30 H 1.08998 * 109.47813 * 299.99976 * 9 7 2 31 31 H 1.09004 * 109.46985 * 60.00167 * 10 9 7 32 32 H 1.09000 * 109.47217 * 300.00274 * 10 9 7 33 33 H 1.09000 * 109.50464 * 299.12821 * 16 14 12 34 34 H 1.09004 * 109.50448 * 59.20891 * 16 14 12 35 35 H 1.09010 * 109.57292 * 182.46227 * 17 16 14 36 36 H 1.08999 * 109.51741 * 62.24484 * 17 16 14 37 37 H 1.09000 * 109.50850 * 297.67587 * 18 17 16 38 38 H 1.09001 * 109.50360 * 177.59883 * 18 17 16 39 39 H 1.09004 * 109.46194 * 60.81943 * 19 18 17 40 40 H 1.08999 * 109.46311 * 180.79315 * 19 18 17 41 41 H 1.09002 * 109.46683 * 55.70552 * 21 20 19 42 42 H 1.08996 * 109.47155 * 175.70282 * 21 20 19 43 43 H 1.08007 * 120.41813 * 359.97438 * 23 22 21 44 44 H 1.08002 * 120.78859 * 180.21412 * 24 23 22 45 45 H 1.08009 * 120.41633 * 179.75567 * 25 24 23 46 46 H 1.08002 * 119.62099 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 8 1.5196 -4.9195 0.0020 12 6 2.2508 -6.0452 0.0024 13 8 3.4573 -5.9819 0.0027 14 6 1.5667 -7.3880 0.0023 15 1 0.6127 -7.3096 0.5237 16 6 1.3238 -7.8362 -1.4406 17 6 0.6467 -9.2105 -1.4367 18 6 1.5314 -10.2033 -0.6777 19 6 1.7682 -9.6864 0.7431 20 7 2.4180 -8.3708 0.6849 21 6 2.7860 -7.9053 2.0287 22 6 1.5379 -7.6939 2.8463 23 6 1.0828 -8.7047 3.6721 24 6 -0.0634 -8.4981 4.4240 25 6 -0.7179 -7.2811 4.3086 26 6 -0.2065 -6.3194 3.4585 27 7 0.8897 -6.5488 2.7618 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5564 0.8919 31 1 2.8728 -3.6038 0.8910 32 1 2.8715 -3.6046 -0.8890 33 1 0.6791 -7.1146 -1.9423 34 1 2.2762 -7.9008 -1.9668 35 1 0.5111 -9.5537 -2.4624 36 1 -0.3233 -9.1371 -0.9450 37 1 2.4871 -10.3059 -1.1916 38 1 1.0357 -11.1731 -0.6342 39 1 0.8133 -9.5972 1.2611 40 1 2.4095 -10.3844 1.2813 41 1 3.4150 -8.6527 2.5124 42 1 3.3327 -6.9657 1.9507 43 1 1.6155 -9.6423 3.7335 44 1 -0.4404 -9.2686 5.0803 45 1 -1.6160 -7.0871 4.8765 46 1 -0.7105 -5.3690 3.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790076034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:44 Heat of formation + Delta-G solvation = -54.501761 kcal Electronic energy + Delta-G solvation = -27533.287474 eV Core-core repulsion = 23808.578469 eV Total energy + Delta-G solvation = -3724.709005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96514 -39.78169 -38.34189 -35.77980 -34.36857 -33.26093 -32.57903 -31.48380 -31.03228 -30.04678 -27.11721 -25.33904 -24.12332 -23.86173 -23.19304 -21.90265 -21.08267 -20.41233 -19.52214 -17.39785 -16.91819 -16.48332 -16.28990 -16.07041 -15.73109 -15.62204 -15.35270 -14.90804 -14.48213 -14.39355 -13.98595 -13.76693 -13.47226 -13.34729 -13.11516 -12.90609 -12.55101 -12.40707 -12.28914 -11.88727 -11.78055 -11.45841 -11.15373 -11.01026 -10.92499 -10.87865 -10.63918 -10.60774 -10.54992 -10.01729 -9.88734 -9.56040 -9.46816 -9.43515 -9.22519 -9.13639 -8.48352 -8.37832 -6.04571 -4.08149 0.94547 1.16152 2.76636 3.16979 3.33725 3.37218 3.41143 3.61970 3.96792 4.17285 4.43866 4.49893 4.63642 4.74162 4.75371 4.79330 4.87859 4.98998 5.02990 5.17822 5.31344 5.31847 5.33747 5.38688 5.43517 5.54934 5.55282 5.62117 5.71248 5.77216 5.84806 5.91407 5.96994 6.00291 6.04386 6.20047 6.23637 6.27191 6.58137 6.73168 6.77363 6.86447 7.21339 7.65588 7.73008 7.95041 7.96411 8.30185 8.50556 8.97331 9.55596 11.06948 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003609 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.299871 B = 7756.203416 C = 8902.068838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.079 3.921 11 O -0.349 6.349 12 C 0.474 3.526 13 O -0.509 6.509 14 C 0.098 3.902 15 H 0.075 0.925 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.118 4.118 19 C 0.053 3.947 20 N -0.503 5.503 21 C 0.091 3.909 22 C 0.086 3.914 23 C -0.166 4.166 24 C -0.079 4.079 25 C -0.175 4.175 26 C 0.109 3.891 27 N -0.462 5.462 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -23.832 5.337 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.006 3.994 11 O -0.264 6.264 12 C 0.316 3.684 13 O -0.398 6.398 14 C -0.012 4.012 15 H 0.093 0.907 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.074 4.074 20 N -0.227 5.227 21 C -0.037 4.037 22 C -0.054 4.054 23 C -0.187 4.187 24 C -0.105 4.105 25 C -0.195 4.195 26 C -0.048 4.048 27 N -0.172 5.172 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.807 -23.031 4.478 23.476 hybrid contribution -0.621 0.489 1.267 1.493 sum -1.427 -22.542 5.745 23.306 Atomic orbital electron populations 1.69965 1.06055 1.26937 1.50020 1.24963 0.94887 0.99260 0.94975 0.86562 0.79507 0.82623 0.78775 1.20085 1.21171 1.20107 1.20969 0.93131 0.90248 1.51891 0.92399 1.19118 0.94153 0.89012 0.98672 1.23533 0.96243 0.79074 1.00526 1.86510 1.42138 1.15447 1.82289 1.22916 0.86339 0.86702 0.72457 1.90590 1.15623 1.88081 1.45512 1.21154 0.95307 0.87410 0.97303 0.90747 1.21610 1.02297 0.97463 0.93528 1.21583 0.98532 0.94541 1.00911 1.21623 1.00753 0.98081 0.95159 1.22200 0.97626 0.89935 0.97677 1.62094 1.42632 1.01850 1.16128 1.21466 0.92255 1.03789 0.86199 1.22297 0.97825 0.89711 0.95526 1.21970 0.98035 1.00347 0.98355 1.21552 0.94491 0.97116 0.97332 1.22198 1.01604 0.94849 1.00839 1.22966 0.91586 0.99252 0.91018 1.67744 1.07479 1.20856 1.21103 0.92770 0.95586 0.95402 0.92578 0.92756 0.90214 0.90189 0.91042 0.92028 0.90674 0.91318 0.94488 0.90107 0.88650 0.87604 0.85131 0.85057 0.84805 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.75 5.35 -27.88 -0.15 0.60 16 10 C 0.08 1.87 5.40 37.16 0.20 2.07 16 11 O -0.35 -7.53 10.22 -39.26 -0.40 -7.93 16 12 C 0.47 9.11 5.55 36.01 0.20 9.31 16 13 O -0.51 -10.84 14.96 -18.74 -0.28 -11.12 16 14 C 0.10 1.46 1.73 -68.87 -0.12 1.34 16 15 H 0.07 1.17 6.60 -51.93 -0.34 0.82 16 16 C -0.11 -1.40 5.36 -26.61 -0.14 -1.55 16 17 C -0.12 -1.12 6.01 -26.57 -0.16 -1.28 16 18 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 19 C 0.05 0.51 4.85 -3.84 -0.02 0.49 16 20 N -0.50 -6.54 4.46 -229.52 -1.02 -7.56 16 21 C 0.09 1.20 5.23 -4.98 -0.03 1.17 16 22 C 0.09 1.12 4.71 -82.59 -0.39 0.73 16 23 C -0.17 -1.65 8.47 -39.44 -0.33 -1.99 16 24 C -0.08 -0.71 10.18 -39.28 -0.40 -1.11 16 25 C -0.17 -1.75 10.11 -39.45 -0.40 -2.15 16 26 C 0.11 1.43 11.18 -17.55 -0.20 1.23 16 27 N -0.46 -7.11 8.46 -9.47 -0.08 -7.19 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 32 H 0.05 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.04 0.37 6.73 -51.93 -0.35 0.02 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.10 0.98 7.99 -51.93 -0.42 0.57 16 42 H 0.11 1.76 6.00 -51.93 -0.31 1.44 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 46 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -33.35 372.13 -10.27 -43.62 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.30 Total: -0.08 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.51 Total: -6.09 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.37 Total: -40.77 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.68 Total: -19.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.35 -10.27 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790076034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.886 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds