Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48496 * 109.47063 * 239.99796 * 3 2 1 5 5 H 1.48500 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47457 * 119.99872 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47113 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99971 * 180.02562 * 11 10 9 13 13 O 1.20819 * 120.00077 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99958 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46477 * 329.49431 * 14 12 11 16 16 C 1.53035 * 109.45520 * 89.46610 * 14 12 11 17 17 C 1.53206 * 109.29883 * 179.19011 * 16 14 12 18 18 C 1.53114 * 109.11672 * 302.36898 * 17 16 14 19 19 C 1.53035 * 109.30934 * 57.63703 * 18 17 16 20 20 N 1.46839 * 109.52678 * 300.79794 * 19 18 17 21 21 C 1.46904 * 111.00347 * 185.83686 * 20 19 18 22 22 C 1.50694 * 109.47087 * 295.70394 * 21 20 19 23 23 C 1.38234 * 119.61830 * 94.72856 * 22 21 20 24 24 C 1.38627 * 119.16149 * 179.75313 * 23 22 21 25 25 C 1.38666 * 118.41829 * 0.50691 * 24 23 22 26 26 C 1.38176 * 119.16769 * 359.73060 * 25 24 23 27 27 N 1.31850 * 119.61931 * 274.99545 * 22 21 20 28 28 H 0.96996 * 120.00410 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47121 * 60.00320 * 9 7 2 30 30 H 1.08998 * 109.47813 * 299.99976 * 9 7 2 31 31 H 1.09004 * 109.46985 * 60.00167 * 10 9 7 32 32 H 1.09000 * 109.47217 * 300.00274 * 10 9 7 33 33 H 1.09000 * 109.50464 * 299.12821 * 16 14 12 34 34 H 1.09004 * 109.50448 * 59.20891 * 16 14 12 35 35 H 1.09010 * 109.57292 * 182.46227 * 17 16 14 36 36 H 1.08999 * 109.51741 * 62.24484 * 17 16 14 37 37 H 1.09000 * 109.50850 * 297.67587 * 18 17 16 38 38 H 1.09001 * 109.50360 * 177.59883 * 18 17 16 39 39 H 1.09004 * 109.46194 * 60.81943 * 19 18 17 40 40 H 1.08999 * 109.46311 * 180.79315 * 19 18 17 41 41 H 1.09002 * 109.46683 * 55.70552 * 21 20 19 42 42 H 1.08996 * 109.47155 * 175.70282 * 21 20 19 43 43 H 1.08007 * 120.41813 * 359.97438 * 23 22 21 44 44 H 1.08002 * 120.78859 * 180.21412 * 24 23 22 45 45 H 1.08009 * 120.41633 * 179.75567 * 25 24 23 46 46 H 1.08002 * 119.62099 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 8 1.5196 -4.9195 0.0020 12 6 2.2508 -6.0452 0.0024 13 8 3.4573 -5.9819 0.0027 14 6 1.5667 -7.3880 0.0023 15 1 0.6127 -7.3096 0.5237 16 6 1.3238 -7.8362 -1.4406 17 6 0.6467 -9.2105 -1.4367 18 6 1.5314 -10.2033 -0.6777 19 6 1.7682 -9.6864 0.7431 20 7 2.4180 -8.3708 0.6849 21 6 2.7860 -7.9053 2.0287 22 6 1.5379 -7.6939 2.8463 23 6 1.0828 -8.7047 3.6721 24 6 -0.0634 -8.4981 4.4240 25 6 -0.7179 -7.2811 4.3086 26 6 -0.2065 -6.3194 3.4585 27 7 0.8897 -6.5488 2.7618 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5564 0.8919 31 1 2.8728 -3.6038 0.8910 32 1 2.8715 -3.6046 -0.8890 33 1 0.6791 -7.1146 -1.9423 34 1 2.2762 -7.9008 -1.9668 35 1 0.5111 -9.5537 -2.4624 36 1 -0.3233 -9.1371 -0.9450 37 1 2.4871 -10.3059 -1.1916 38 1 1.0357 -11.1731 -0.6342 39 1 0.8133 -9.5972 1.2611 40 1 2.4095 -10.3844 1.2813 41 1 3.4150 -8.6527 2.5124 42 1 3.3327 -6.9657 1.9507 43 1 1.6155 -9.6423 3.7335 44 1 -0.4404 -9.2686 5.0803 45 1 -1.6160 -7.0871 4.8765 46 1 -0.7105 -5.3690 3.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790076034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -74.980574 kcal Electronic energy + Delta-G solvation = -27534.175501 eV Core-core repulsion = 23808.578469 eV Total energy + Delta-G solvation = -3725.597033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10751 -41.03377 -39.48754 -37.49332 -35.47252 -35.24332 -33.43982 -32.72061 -32.01228 -31.84226 -28.09239 -27.20892 -25.44822 -24.76822 -24.07409 -23.12558 -22.70652 -21.85042 -20.58539 -19.04082 -18.22407 -17.92130 -17.59592 -17.41324 -17.08911 -16.70841 -16.51682 -16.34284 -16.04372 -15.34294 -15.14958 -14.86722 -14.59269 -14.39470 -14.26863 -14.12142 -13.98470 -13.84418 -13.56140 -13.09687 -13.02751 -12.77945 -12.67074 -12.62940 -12.52361 -12.39346 -11.99431 -11.76799 -11.69826 -11.51209 -11.43280 -11.40406 -11.05782 -10.80211 -10.62369 -10.46806 -10.00995 -9.45604 -8.28001 -6.41742 0.10130 0.36312 1.21988 1.38627 1.43060 1.50654 1.71397 2.38482 2.65406 2.97708 3.05663 3.27379 3.62166 3.68775 3.79527 3.91483 4.00829 4.04796 4.09493 4.18569 4.20396 4.21696 4.23328 4.27583 4.42608 4.52601 4.59288 4.67212 4.70112 4.74395 4.79869 4.84788 4.93353 4.98897 5.12447 5.18160 5.18407 5.24186 5.25168 5.42717 5.44552 5.56455 5.71166 5.74383 5.77742 5.98593 6.05464 6.70031 6.85020 7.08313 7.27695 8.84556 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003609 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.299871 B = 7756.203416 C = 8902.068838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.097 3.903 11 O -0.359 6.359 12 C 0.471 3.529 13 O -0.533 6.533 14 C 0.110 3.890 15 H 0.066 0.934 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.052 3.948 20 N -0.510 5.510 21 C 0.093 3.907 22 C 0.066 3.934 23 C -0.154 4.154 24 C -0.072 4.072 25 C -0.165 4.165 26 C 0.076 3.924 27 N -0.513 5.513 28 H 0.268 0.732 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.165 0.835 44 H 0.172 0.828 45 H 0.160 0.840 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -26.506 6.220 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.023 3.977 11 O -0.275 6.275 12 C 0.315 3.685 13 O -0.422 6.422 14 C 0.001 3.999 15 H 0.084 0.916 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.075 4.075 20 N -0.235 5.235 21 C -0.036 4.036 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.098 4.098 25 C -0.185 4.185 26 C -0.080 4.080 27 N -0.223 5.223 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.182 0.818 44 H 0.190 0.810 45 H 0.178 0.822 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.786 -25.733 5.361 26.298 hybrid contribution -0.657 1.246 1.035 1.748 sum -1.443 -24.487 6.396 25.350 Atomic orbital electron populations 1.70091 1.07798 1.28352 1.50205 1.25959 0.95861 1.03339 0.93917 0.85378 0.78241 0.77379 0.79318 1.18978 1.20137 1.19155 1.21327 0.93578 0.91301 1.52828 0.91972 1.18899 0.94127 0.90519 0.96340 1.23035 0.95013 0.79558 1.00061 1.86514 1.42501 1.15630 1.82866 1.23920 0.86307 0.87269 0.70990 1.90561 1.16735 1.88319 1.46614 1.21139 0.94508 0.85281 0.99013 0.91640 1.21683 1.02185 0.99581 0.91606 1.21589 0.98408 0.92512 1.02471 1.21654 1.00662 0.98892 0.94045 1.22391 0.97991 0.88150 0.98939 1.62161 1.42649 1.02605 1.16073 1.21407 0.92715 1.02579 0.86857 1.22308 0.97910 0.90197 0.96954 1.22276 0.98091 1.00451 0.96585 1.22029 0.93596 0.97251 0.96929 1.22454 1.02099 0.94481 0.99485 1.22971 0.92037 1.00137 0.92890 1.67583 1.08913 1.22934 1.22886 0.92278 0.97698 0.97880 0.93318 0.92704 0.91129 0.90931 0.89156 0.91777 0.90924 0.88311 0.94379 0.87429 0.85562 0.92168 0.81762 0.81019 0.82193 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -33.01 9.11 25.60 0.23 -32.78 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.04 2.21 5.35 29.85 0.16 2.37 16 10 C 0.10 4.89 5.40 71.98 0.39 5.28 16 11 O -0.36 -16.70 10.22 -51.42 -0.53 -17.23 16 12 C 0.47 19.24 5.55 71.24 0.40 19.64 16 13 O -0.53 -23.98 14.96 21.99 0.33 -23.65 16 14 C 0.11 3.39 1.73 44.19 0.08 3.47 16 15 H 0.07 2.14 6.60 -2.38 -0.02 2.13 16 16 C -0.11 -2.86 5.36 30.67 0.16 -2.70 16 17 C -0.11 -1.91 6.01 30.70 0.18 -1.72 16 18 C -0.11 -1.59 6.09 30.64 0.19 -1.40 16 19 C 0.05 0.84 4.85 86.33 0.42 1.26 16 20 N -0.51 -12.94 4.46 -880.06 -3.92 -16.86 16 21 C 0.09 2.43 5.23 85.55 0.45 2.88 16 22 C 0.07 1.68 4.71 42.55 0.20 1.88 16 23 C -0.15 -2.60 8.47 22.36 0.19 -2.41 16 24 C -0.07 -1.05 10.18 22.47 0.23 -0.82 16 25 C -0.17 -3.08 10.11 22.36 0.23 -2.85 16 26 C 0.08 2.10 11.18 84.67 0.95 3.05 16 27 N -0.51 -16.65 8.46 -183.89 -1.56 -18.21 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.05 2.49 8.13 -2.39 -0.02 2.47 16 32 H 0.05 2.72 8.13 -2.39 -0.02 2.71 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.04 0.64 6.73 -2.39 -0.02 0.62 16 40 H 0.11 1.21 8.08 -2.39 -0.02 1.19 16 41 H 0.13 2.38 7.99 -2.39 -0.02 2.36 16 42 H 0.06 2.13 6.00 -2.39 -0.01 2.11 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 46 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -76.94 372.13 2.50 -74.44 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.96 Total: 15.05 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.91 Total: -3.91 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -5.19 Total: -91.74 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.20 Total: -40.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -76.94 2.50 -74.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790076034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.540 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds