Wall clock time and date at job start Tue Mar 31 2020 12:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 120.00208 * 2 1 4 4 C 1.38212 * 120.00105 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99829 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00163 * 359.96184 * 5 4 3 7 7 C 1.50704 * 119.99963 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46856 * 204.99451 * 7 6 5 9 9 O 1.42894 * 109.47063 * 325.00015 * 7 6 5 10 10 C 1.52996 * 109.47003 * 84.99637 * 7 6 5 11 11 N 1.46497 * 109.47267 * 180.02562 * 10 7 6 12 12 C 1.34776 * 120.00194 * 180.02562 * 11 10 7 13 13 O 1.21582 * 120.00274 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00258 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47269 * 184.79147 * 15 14 12 17 17 C 1.50694 * 115.55114 * 294.81128 * 16 15 14 18 18 H 1.08008 * 119.99906 * 95.20873 * 17 16 15 19 19 C 1.37875 * 120.00314 * 274.92789 * 17 16 15 20 20 N 1.31509 * 119.99913 * 355.42420 * 19 17 16 21 21 Si 1.86807 * 120.00040 * 175.41703 * 19 17 16 22 22 H 1.48494 * 109.47052 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47106 * 300.00083 * 21 19 17 25 25 C 1.53003 * 117.49834 * 80.48431 * 16 15 14 26 26 C 1.53006 * 117.49908 * 149.14426 * 16 15 14 27 27 C 1.38222 * 119.99962 * 180.20933 * 2 1 3 28 28 H 1.08999 * 109.47121 * 89.99987 * 1 2 3 29 29 H 1.09001 * 109.47312 * 210.00089 * 1 2 3 30 30 H 1.09000 * 109.47317 * 329.99992 * 1 2 3 31 31 H 1.08001 * 119.99761 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.00230 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.99829 * 179.97438 * 5 4 3 34 34 H 0.96696 * 114.00630 * 59.99785 * 9 7 6 35 35 H 1.09007 * 109.47402 * 59.99739 * 10 7 6 36 36 H 1.09003 * 109.47711 * 300.00129 * 10 7 6 37 37 H 0.97004 * 119.99607 * 0.02562 * 11 10 7 38 38 H 0.96999 * 119.99637 * 359.97438 * 14 12 11 39 39 H 1.09001 * 109.47395 * 64.78624 * 15 14 12 40 40 H 1.09007 * 109.47080 * 304.78945 * 15 14 12 41 41 H 0.97001 * 119.99960 * 184.99387 * 20 19 17 42 42 H 1.09003 * 117.50034 * 214.99852 * 25 16 15 43 43 H 1.09002 * 117.49971 * 0.02686 * 25 16 15 44 44 H 1.08996 * 117.49810 * 359.97342 * 26 16 15 45 45 H 1.08995 * 117.50078 * 144.97442 * 26 16 15 46 46 H 1.08001 * 119.99729 * 0.02771 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5022 0.0002 8 1 3.7085 -3.2826 -0.4329 9 8 5.5270 -2.3631 -0.7742 10 6 4.7000 -2.8804 1.4368 11 7 5.4330 -4.1488 1.4363 12 6 5.8593 -4.6813 2.5987 13 8 5.6360 -4.1088 3.6477 14 7 6.5341 -5.8481 2.5981 15 6 6.9970 -6.4272 3.8615 16 6 7.8309 -7.6774 3.5744 17 6 7.0842 -8.8270 2.9485 18 1 7.0906 -8.9552 1.8761 19 6 6.3977 -9.7186 3.7453 20 7 6.4679 -9.6193 5.0547 21 14 5.3677 -11.0675 2.9647 22 1 6.2369 -11.9315 2.1262 23 1 4.7350 -11.8862 4.0299 24 1 4.3119 -10.4567 2.1177 25 6 9.2898 -7.4738 3.1609 26 6 8.9570 -8.0157 4.5533 27 6 2.1981 -1.1970 -0.0044 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 -0.0010 33 1 5.3516 -0.0001 -0.0014 34 1 6.1323 -1.6844 -0.4458 35 1 3.7901 -2.9864 2.0277 36 1 5.3255 -2.1000 1.8701 37 1 5.6115 -4.6054 0.5992 38 1 6.7126 -6.3046 1.7611 39 1 6.1369 -6.6970 4.4744 40 1 7.6076 -5.6975 4.3936 41 1 6.0449 -10.2885 5.6152 42 1 9.7097 -8.1715 2.4362 43 1 9.6558 -6.4492 3.0940 44 1 9.1041 -7.3474 5.4017 45 1 9.1575 -9.0698 4.7450 46 1 1.6580 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797560641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:24 Heat of formation + Delta-G solvation = -42.028615 kcal Electronic energy + Delta-G solvation = -25755.432961 eV Core-core repulsion = 22031.264832 eV Total energy + Delta-G solvation = -3724.168129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21535 -39.29606 -37.52944 -36.65549 -33.99906 -33.22383 -33.01746 -31.95920 -31.85710 -28.42901 -27.22432 -26.09928 -25.07380 -23.43074 -22.48066 -21.15184 -20.85843 -20.16171 -19.35926 -17.83422 -17.65925 -16.53978 -16.34961 -16.03769 -15.31117 -15.17560 -14.99691 -14.66707 -14.38003 -14.20060 -14.04111 -13.82280 -13.60931 -13.41027 -13.21566 -12.67613 -12.57730 -12.53233 -12.43431 -11.96363 -11.70292 -11.53631 -11.49155 -11.22643 -10.95725 -10.94205 -10.53601 -10.45499 -10.21304 -9.73414 -9.44853 -9.12079 -9.02073 -8.93057 -8.85872 -8.46324 -8.21643 -7.96449 -6.05477 -4.15207 0.98100 1.07203 3.13038 3.27756 3.33748 3.34925 3.43859 3.79315 4.13040 4.29783 4.36510 4.47111 4.56568 4.68815 4.78550 4.90728 4.92661 5.02457 5.13874 5.22356 5.26778 5.32414 5.40790 5.46636 5.66436 5.69836 5.72601 5.82606 6.06061 6.13304 6.22592 6.27444 6.37518 6.50418 6.61636 6.66767 6.73131 6.74308 6.87632 7.14496 7.27802 7.34431 7.44014 7.47967 7.64360 7.82828 8.36318 8.67655 8.85893 9.20946 9.51648 11.01715 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002444 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.602516 B =11451.751310 C =12187.990758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.138 3.862 8 H 0.115 0.885 9 O -0.550 6.550 10 C 0.117 3.883 11 N -0.750 5.750 12 C 0.698 3.302 13 O -0.606 6.606 14 N -0.720 5.720 15 C 0.182 3.818 16 C 0.025 3.975 17 C -0.500 4.500 18 H 0.059 0.941 19 C 0.073 3.927 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.211 4.211 26 C -0.142 4.142 27 C -0.107 4.107 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.376 0.624 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.397 0.603 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 19.364 -12.011 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.109 4.109 7 C 0.078 3.922 8 H 0.133 0.867 9 O -0.356 6.356 10 C -0.008 4.008 11 N -0.407 5.407 12 C 0.397 3.603 13 O -0.486 6.486 14 N -0.372 5.372 15 C 0.058 3.942 16 C 0.024 3.976 17 C -0.537 4.537 18 H 0.077 0.923 19 C -0.131 4.131 20 N -0.511 5.511 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.248 4.248 26 C -0.180 4.180 27 C -0.125 4.125 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.921 19.336 -11.156 23.687 hybrid contribution -0.180 -0.748 -0.670 1.020 sum -8.101 18.588 -11.826 23.474 Atomic orbital electron populations 1.20811 0.91028 1.03013 1.02405 1.19930 0.96211 0.93059 0.99275 1.21070 0.94315 0.97553 1.00903 1.21099 0.94316 0.97920 0.99776 1.20861 0.99824 0.92001 1.00561 1.20356 0.94386 0.95348 1.00821 1.21064 0.86086 0.94031 0.90986 0.86749 1.86627 1.31400 1.61953 1.55610 1.21707 0.97285 0.86175 0.95668 1.44941 1.62352 1.25060 1.08381 1.16039 0.79068 0.81600 0.83566 1.90870 1.63509 1.63609 1.30575 1.45147 1.58625 1.21691 1.11735 1.20850 0.97879 0.92549 0.82873 1.19042 0.85446 0.93539 0.99600 1.20308 1.30961 1.09697 0.92754 0.92296 1.24988 0.95893 0.97414 0.94815 1.69979 1.43518 1.34481 1.03103 0.86686 0.80746 0.81763 0.78930 1.20313 1.21301 1.20187 1.23012 1.02935 0.99177 0.99663 1.22467 1.04808 1.00210 0.90540 1.20902 0.93221 0.98004 1.00421 0.91096 0.91303 0.91478 0.86073 0.85861 0.86084 0.77556 0.90852 0.91559 0.76747 0.76927 0.91763 0.94437 0.92830 0.90442 0.91733 0.91812 0.89521 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 4 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 5 C -0.11 -0.97 9.33 -39.58 -0.37 -1.34 16 6 C -0.11 -1.01 5.00 -104.62 -0.52 -1.53 16 7 C 0.14 1.31 3.30 -27.88 -0.09 1.22 16 8 H 0.11 1.05 8.05 -51.93 -0.42 0.63 16 9 O -0.55 -5.27 12.88 -35.23 -0.45 -5.73 16 10 C 0.12 1.43 5.32 -4.05 -0.02 1.41 16 11 N -0.75 -10.75 5.45 -65.22 -0.36 -11.11 16 12 C 0.70 13.51 8.57 -86.91 -0.74 12.77 16 13 O -0.61 -14.10 16.34 5.29 0.09 -14.02 16 14 N -0.72 -14.28 5.48 -65.23 -0.36 -14.64 16 15 C 0.18 4.21 5.50 -4.05 -0.02 4.19 16 16 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 17 C -0.50 -12.90 8.59 -34.44 -0.30 -13.20 16 18 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 19 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 20 N -0.87 -24.40 12.65 55.43 0.70 -23.70 16 21 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 26 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 27 C -0.11 -0.98 9.34 -39.58 -0.37 -1.34 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.12 0.80 6.61 -52.49 -0.35 0.45 16 34 H 0.38 2.62 7.39 45.56 0.34 2.95 16 35 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.92 8.36 -40.82 -0.34 4.58 16 38 H 0.40 7.20 8.34 -40.82 -0.34 6.86 16 39 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.04 0.86 8.09 -51.92 -0.42 0.44 16 41 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -31.97 388.73 -10.42 -42.39 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -6.57 Total: 13.51 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -4.31 Total: -8.20 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.01 Total: -49.44 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.37 Total: -19.74 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.97 -10.42 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.361 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds