Wall clock time and date at job start Tue Mar 31 2020 12:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 120.00208 * 2 1 4 4 C 1.38212 * 120.00105 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99829 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00163 * 359.96184 * 5 4 3 7 7 C 1.50704 * 119.99963 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46856 * 204.99451 * 7 6 5 9 9 O 1.42894 * 109.47063 * 325.00015 * 7 6 5 10 10 C 1.52996 * 109.47003 * 84.99637 * 7 6 5 11 11 N 1.46497 * 109.47267 * 180.02562 * 10 7 6 12 12 C 1.34776 * 120.00194 * 180.02562 * 11 10 7 13 13 O 1.21582 * 120.00274 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00258 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47269 * 184.79147 * 15 14 12 17 17 C 1.50694 * 115.55114 * 294.81128 * 16 15 14 18 18 H 1.08008 * 119.99906 * 95.20873 * 17 16 15 19 19 C 1.37875 * 120.00314 * 274.92789 * 17 16 15 20 20 N 1.31509 * 119.99913 * 355.42420 * 19 17 16 21 21 Si 1.86807 * 120.00040 * 175.41703 * 19 17 16 22 22 H 1.48494 * 109.47052 * 60.00642 * 21 19 17 23 23 H 1.48500 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47106 * 300.00083 * 21 19 17 25 25 C 1.53003 * 117.49834 * 80.48431 * 16 15 14 26 26 C 1.53006 * 117.49908 * 149.14426 * 16 15 14 27 27 C 1.38222 * 119.99962 * 180.20933 * 2 1 3 28 28 H 1.08999 * 109.47121 * 89.99987 * 1 2 3 29 29 H 1.09001 * 109.47312 * 210.00089 * 1 2 3 30 30 H 1.09000 * 109.47317 * 329.99992 * 1 2 3 31 31 H 1.08001 * 119.99761 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.00230 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.99829 * 179.97438 * 5 4 3 34 34 H 0.96696 * 114.00630 * 59.99785 * 9 7 6 35 35 H 1.09007 * 109.47402 * 59.99739 * 10 7 6 36 36 H 1.09003 * 109.47711 * 300.00129 * 10 7 6 37 37 H 0.97004 * 119.99607 * 0.02562 * 11 10 7 38 38 H 0.96999 * 119.99637 * 359.97438 * 14 12 11 39 39 H 1.09001 * 109.47395 * 64.78624 * 15 14 12 40 40 H 1.09007 * 109.47080 * 304.78945 * 15 14 12 41 41 H 0.97001 * 119.99960 * 184.99387 * 20 19 17 42 42 H 1.09003 * 117.50034 * 214.99852 * 25 16 15 43 43 H 1.09002 * 117.49971 * 0.02686 * 25 16 15 44 44 H 1.08996 * 117.49810 * 359.97342 * 26 16 15 45 45 H 1.08995 * 117.50078 * 144.97442 * 26 16 15 46 46 H 1.08001 * 119.99729 * 0.02771 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5022 0.0002 8 1 3.7085 -3.2826 -0.4329 9 8 5.5270 -2.3631 -0.7742 10 6 4.7000 -2.8804 1.4368 11 7 5.4330 -4.1488 1.4363 12 6 5.8593 -4.6813 2.5987 13 8 5.6360 -4.1088 3.6477 14 7 6.5341 -5.8481 2.5981 15 6 6.9970 -6.4272 3.8615 16 6 7.8309 -7.6774 3.5744 17 6 7.0842 -8.8270 2.9485 18 1 7.0906 -8.9552 1.8761 19 6 6.3977 -9.7186 3.7453 20 7 6.4679 -9.6193 5.0547 21 14 5.3677 -11.0675 2.9647 22 1 6.2369 -11.9315 2.1262 23 1 4.7350 -11.8862 4.0299 24 1 4.3119 -10.4567 2.1177 25 6 9.2898 -7.4738 3.1609 26 6 8.9570 -8.0157 4.5533 27 6 2.1981 -1.1970 -0.0044 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 -0.0010 33 1 5.3516 -0.0001 -0.0014 34 1 6.1323 -1.6844 -0.4458 35 1 3.7901 -2.9864 2.0277 36 1 5.3255 -2.1000 1.8701 37 1 5.6115 -4.6054 0.5992 38 1 6.7126 -6.3046 1.7611 39 1 6.1369 -6.6970 4.4744 40 1 7.6076 -5.6975 4.3936 41 1 6.0449 -10.2885 5.6152 42 1 9.7097 -8.1715 2.4362 43 1 9.6558 -6.4492 3.0940 44 1 9.1041 -7.3474 5.4017 45 1 9.1575 -9.0698 4.7450 46 1 1.6580 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797560641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:23 Heat of formation + Delta-G solvation = -63.446500 kcal Electronic energy + Delta-G solvation = -25756.361710 eV Core-core repulsion = 22031.264832 eV Total energy + Delta-G solvation = -3725.096878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.16666 -40.52927 -38.66402 -38.13548 -35.27100 -34.89452 -33.93504 -33.61258 -32.58147 -29.51062 -27.88361 -27.74301 -26.82943 -24.41373 -23.11074 -22.92637 -21.89497 -21.35918 -21.19112 -19.27748 -18.53995 -18.02028 -17.20268 -17.17402 -16.67359 -16.58740 -16.32661 -15.87317 -15.63904 -15.37889 -15.12947 -14.92247 -14.66172 -14.48572 -14.31028 -14.00516 -13.90082 -13.48648 -13.29919 -13.13030 -12.99993 -12.91504 -12.78700 -12.56183 -12.38069 -12.15212 -12.00570 -11.86006 -11.49422 -11.33569 -11.12889 -10.92713 -10.43310 -10.31478 -10.02418 -9.75940 -9.59946 -9.53797 -8.07642 -6.21890 0.34111 0.45683 1.44062 1.45813 1.51945 1.80273 2.23011 2.43487 2.76835 3.20080 3.28990 3.41170 3.58375 3.71801 3.85697 3.88120 4.03346 4.14468 4.23451 4.26342 4.48916 4.51642 4.57376 4.63196 4.67440 4.71559 4.75850 4.82308 4.87310 4.98152 5.00864 5.04509 5.11421 5.28810 5.30548 5.47165 5.53795 5.57567 5.58697 5.64208 5.67380 5.73694 5.79995 6.08176 6.14490 6.38567 6.65284 6.85436 7.22963 7.47608 7.67258 8.99210 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002444 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.602516 B =11451.751310 C =12187.990758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.122 4.122 7 C 0.155 3.845 8 H 0.120 0.880 9 O -0.557 6.557 10 C 0.118 3.882 11 N -0.728 5.728 12 C 0.695 3.305 13 O -0.647 6.647 14 N -0.715 5.715 15 C 0.199 3.801 16 C 0.003 3.997 17 C -0.504 4.504 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.951 3.049 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.272 1.272 25 C -0.176 4.176 26 C -0.153 4.153 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.387 0.613 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.407 0.593 39 H 0.022 0.978 40 H 0.035 0.965 41 H 0.259 0.741 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 20.416 -14.152 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.123 4.123 7 C 0.096 3.904 8 H 0.137 0.863 9 O -0.364 6.364 10 C -0.007 4.007 11 N -0.386 5.386 12 C 0.395 3.605 13 O -0.530 6.530 14 N -0.368 5.368 15 C 0.074 3.926 16 C 0.003 3.997 17 C -0.542 4.542 18 H 0.082 0.918 19 C -0.178 4.178 20 N -0.546 5.546 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.197 1.197 25 C -0.213 4.213 26 C -0.192 4.192 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.243 0.757 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.987 20.401 -13.374 25.668 hybrid contribution -0.155 -0.981 -0.025 0.994 sum -8.142 19.420 -13.399 24.959 Atomic orbital electron populations 1.20843 0.89726 1.03510 1.03073 1.20238 0.97388 0.93055 0.99025 1.21396 0.94661 0.98245 1.00266 1.21420 0.94618 0.98622 0.99219 1.21143 1.00848 0.91982 1.00352 1.20375 0.94580 0.95377 1.01931 1.20842 0.86194 0.94505 0.88895 0.86281 1.86606 1.31614 1.62609 1.55609 1.21844 0.96307 0.84825 0.97686 1.44780 1.61062 1.25404 1.07320 1.16192 0.78831 0.81237 0.84226 1.90842 1.64997 1.64634 1.32539 1.44917 1.58889 1.21972 1.11032 1.20406 0.96042 0.92419 0.83699 1.19062 0.86590 0.93359 1.00739 1.20638 1.30562 1.09945 0.93039 0.91788 1.25718 0.97064 0.99777 0.95203 1.70109 1.44800 1.35324 1.04317 0.85735 0.79327 0.79308 0.77959 1.19415 1.21808 1.19730 1.22992 1.00159 1.00383 0.97816 1.22394 1.05502 0.99282 0.92000 1.21114 0.93455 0.98731 1.00886 0.90276 0.91301 0.90515 0.84234 0.83900 0.84507 0.76214 0.92062 0.91845 0.75194 0.75746 0.95942 0.94676 0.93231 0.89645 0.89456 0.91277 0.91620 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.52 5.88 -19.86 -0.12 -1.63 16 3 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 4 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 5 C -0.13 -1.94 9.33 22.27 0.21 -1.74 16 6 C -0.12 -2.13 5.00 -19.87 -0.10 -2.23 16 7 C 0.16 2.74 3.30 29.85 0.10 2.84 16 8 H 0.12 2.00 8.05 -2.39 -0.02 1.98 16 9 O -0.56 -9.54 12.88 -148.98 -1.92 -11.45 16 10 C 0.12 2.79 5.32 86.38 0.46 3.25 16 11 N -0.73 -20.03 5.45 -478.54 -2.61 -22.64 16 12 C 0.70 26.66 8.57 179.05 1.53 28.19 16 13 O -0.65 -30.44 16.34 -3.97 -0.06 -30.51 16 14 N -0.71 -27.96 5.48 -478.55 -2.62 -30.58 16 15 C 0.20 9.31 5.50 86.38 0.48 9.78 16 16 C 0.00 0.16 1.47 -52.93 -0.08 0.08 16 17 C -0.50 -25.78 8.59 25.60 0.22 -25.56 16 18 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 19 C 0.02 1.23 5.43 84.65 0.46 1.69 16 20 N -0.91 -51.62 12.65 21.45 0.27 -51.35 16 21 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.18 -7.09 9.96 30.62 0.30 -6.79 16 26 C -0.15 -7.10 9.14 30.62 0.28 -6.82 16 27 C -0.12 -2.15 9.34 22.27 0.21 -1.94 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 30 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.14 1.54 6.61 -2.91 -0.02 1.52 16 34 H 0.39 4.56 7.39 -74.06 -0.55 4.01 16 35 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 9.35 8.36 -92.71 -0.78 8.58 16 38 H 0.41 14.18 8.34 -92.71 -0.77 13.41 16 39 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.03 1.63 8.09 -2.38 -0.02 1.61 16 41 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 42 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -68.65 388.73 -0.90 -69.56 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -1.09 Total: 37.15 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.11 Total: -4.54 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.96 Total: -104.57 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.98 Total: -41.96 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.65 -0.90 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.112 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds