Wall clock time and date at job start Tue Mar 31 2020 12:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 119.99864 * 2 1 4 4 C 1.38237 * 119.99829 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00219 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47079 * 24.99651 * 6 5 4 8 8 O 1.42904 * 109.47586 * 144.99975 * 6 5 4 9 9 C 1.53008 * 109.47099 * 264.99963 * 6 5 4 10 10 N 1.46505 * 109.46888 * 179.97438 * 9 6 5 11 11 C 1.34778 * 119.99452 * 180.27734 * 10 9 6 12 12 O 1.21589 * 120.00279 * 354.59814 * 11 10 9 13 13 N 1.34775 * 119.99694 * 174.60919 * 11 10 9 14 14 C 1.46503 * 119.99991 * 184.98366 * 13 11 10 15 15 C 1.52999 * 109.46984 * 185.26326 * 14 13 11 16 16 C 1.50696 * 115.54961 * 65.26746 * 15 14 13 17 17 H 1.07997 * 119.99611 * 271.46731 * 16 15 14 18 18 C 1.37875 * 120.00060 * 91.48044 * 16 15 14 19 19 N 1.31517 * 119.99821 * 182.16952 * 18 16 15 20 20 Si 1.86793 * 120.00193 * 2.16648 * 18 16 15 21 21 H 1.48500 * 109.47185 * 93.33060 * 20 18 16 22 22 H 1.48499 * 109.47244 * 213.33152 * 20 18 16 23 23 H 1.48503 * 109.47321 * 333.33160 * 20 18 16 24 24 C 1.53002 * 117.49864 * 279.59193 * 15 14 13 25 25 C 1.52998 * 117.49508 * 210.93677 * 15 14 13 26 26 C 1.38235 * 119.99903 * 0.24961 * 5 4 3 27 27 C 1.38231 * 120.00205 * 359.49617 * 26 5 4 28 28 H 1.08998 * 109.46992 * 89.99630 * 1 2 3 29 29 H 1.08999 * 109.47364 * 209.99815 * 1 2 3 30 30 H 1.09004 * 109.46747 * 329.99614 * 1 2 3 31 31 H 1.08002 * 120.00214 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.99840 * 179.97438 * 4 3 2 33 33 H 0.96701 * 113.99639 * 60.00146 * 8 6 5 34 34 H 1.08998 * 109.47021 * 59.99691 * 9 6 5 35 35 H 1.09001 * 109.46900 * 299.99797 * 9 6 5 36 36 H 0.96997 * 119.99986 * 0.02562 * 10 9 6 37 37 H 0.97005 * 120.00343 * 4.96969 * 13 11 10 38 38 H 1.08998 * 109.46689 * 305.25825 * 14 13 11 39 39 H 1.08998 * 109.47282 * 65.26058 * 14 13 11 40 40 H 0.97005 * 119.99793 * 179.97438 * 19 18 16 41 41 H 1.09003 * 117.49851 * 0.02562 * 24 15 14 42 42 H 1.08995 * 117.49883 * 145.02364 * 24 15 14 43 43 H 1.09006 * 117.49670 * 214.98045 * 25 15 14 44 44 H 1.09006 * 117.50148 * 359.96988 * 25 15 14 45 45 H 1.08005 * 119.99782 * 179.73045 * 26 5 4 46 46 H 1.08001 * 120.00345 * 180.23703 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7786 0.0000 -0.0028 7 1 6.1423 0.9312 0.4316 8 8 6.2557 -1.1040 0.7691 9 6 6.2875 -0.1251 -1.4403 10 7 7.7526 -0.1245 -1.4414 11 6 8.4255 -0.2201 -2.6053 12 8 7.8208 -0.4053 -3.6438 13 7 9.7687 -0.1105 -2.6180 14 6 10.4912 -0.1047 -3.8924 15 6 11.9976 -0.1029 -3.6247 16 6 12.5402 -1.3391 -2.9552 17 1 12.5633 -1.4034 -1.8774 18 6 13.0075 -2.3878 -3.7186 19 7 13.4414 -3.4837 -3.1351 20 14 13.0241 -2.2522 -5.5815 21 1 14.3491 -1.7536 -6.0298 22 1 12.7707 -3.5886 -6.1774 23 1 11.9657 -1.3066 -6.0185 24 6 12.6511 1.2353 -3.2738 25 6 12.8955 0.6000 -4.6448 26 6 3.5805 -1.1971 -0.0074 27 6 2.1982 -1.1972 -0.0015 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 -0.0010 33 1 5.9701 -1.9670 0.4394 34 1 5.9237 0.7169 -2.0291 35 1 5.9238 -1.0563 -1.8747 36 1 8.2382 -0.0518 -0.6049 37 1 10.2572 -0.0352 -1.7833 38 1 10.2251 -0.9933 -4.4649 39 1 10.2218 0.7867 -4.4589 40 1 13.7698 -4.2217 -3.6723 41 1 12.0078 2.1143 -3.2332 42 1 13.4738 1.2215 -2.5589 43 1 13.8789 0.1685 -4.8313 44 1 12.4131 1.0607 -5.5069 45 1 4.1205 -2.1324 -0.0126 46 1 1.6582 -2.1325 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797561418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:29 Heat of formation + Delta-G solvation = -36.958106 kcal Electronic energy + Delta-G solvation = -25736.389479 eV Core-core repulsion = 22012.441225 eV Total energy + Delta-G solvation = -3723.948255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22357 -39.39118 -37.62177 -37.01086 -34.05210 -33.39494 -33.17795 -32.09494 -31.24654 -29.51543 -27.08694 -26.00793 -24.90711 -23.25795 -22.77215 -21.79657 -21.04344 -20.33989 -19.26943 -17.88024 -17.80517 -16.52757 -16.37785 -15.80307 -15.40011 -15.27544 -15.18892 -14.89196 -14.38680 -14.22225 -14.08459 -13.90521 -13.71054 -13.63534 -13.14000 -12.89472 -12.66264 -12.55698 -12.49538 -12.30449 -11.95307 -11.84647 -11.44209 -11.22544 -11.14745 -10.89463 -10.46595 -10.43754 -10.16360 -9.81660 -9.54282 -9.24311 -9.15434 -8.92172 -8.85329 -8.62830 -8.55160 -8.14160 -6.13498 -4.17733 0.94551 1.08885 3.05207 3.29772 3.41196 3.41374 3.47506 3.69554 4.15029 4.29850 4.42240 4.44779 4.56561 4.62688 4.69512 4.76283 4.82899 5.04651 5.06660 5.13385 5.16819 5.22325 5.34895 5.42113 5.60963 5.67518 5.70562 5.73901 5.78787 6.03998 6.06460 6.07394 6.24453 6.26413 6.27549 6.42093 6.49625 6.65300 6.68655 6.70368 7.00605 7.10986 7.20554 7.30183 7.44363 7.69958 8.43178 8.56260 8.86522 9.10614 9.49537 10.97859 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.002290 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.909124 B =12222.338188 C =12442.638797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.119 4.119 6 C 0.139 3.861 7 H 0.114 0.886 8 O -0.550 6.550 9 C 0.116 3.884 10 N -0.748 5.748 11 C 0.701 3.299 12 O -0.605 6.605 13 N -0.719 5.719 14 C 0.177 3.823 15 C -0.015 4.015 16 C -0.488 4.488 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.896 5.896 20 Si 0.882 3.118 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.256 1.256 24 C -0.180 4.180 25 C -0.192 4.192 26 C -0.104 4.104 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.377 0.623 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.399 0.601 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.169 8.818 8.085 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.119 4.119 6 C 0.079 3.921 7 H 0.132 0.868 8 O -0.356 6.356 9 C -0.009 4.009 10 N -0.406 5.406 11 C 0.400 3.600 12 O -0.485 6.485 13 N -0.371 5.371 14 C 0.053 3.947 15 C -0.016 4.016 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.125 4.125 19 N -0.532 5.532 20 Si 0.710 3.290 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.180 1.180 24 C -0.218 4.218 25 C -0.230 4.230 26 C -0.122 4.122 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.226 0.774 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.357 8.956 7.413 25.199 hybrid contribution 0.316 -0.465 -0.650 0.859 sum -22.040 8.492 6.763 24.569 Atomic orbital electron populations 1.20809 0.91165 1.02800 1.02444 1.19976 0.96174 0.93261 0.99242 1.21025 0.94066 0.97633 1.01018 1.20987 0.94279 0.97451 0.99367 1.20357 0.95824 0.93985 1.01783 1.21043 0.88577 0.91590 0.90882 0.86845 1.86632 1.76506 1.16818 1.55624 1.21740 0.80278 1.03053 0.95834 1.44914 1.06086 1.81288 1.08268 1.15984 0.82276 0.78105 0.83589 1.90873 1.68377 1.57478 1.31731 1.44968 1.03959 1.77297 1.10904 1.20948 0.90784 0.99746 0.83251 1.19656 0.89314 0.93234 0.99414 1.20166 1.40956 0.97034 0.94382 0.90406 1.25000 0.94035 0.94777 0.98727 1.69892 1.42113 1.05182 1.36047 0.86817 0.79089 0.77123 0.85968 1.20672 1.22256 1.17969 1.22890 1.03752 0.96766 0.98363 1.22924 1.01828 1.05814 0.92444 1.20889 0.94350 0.97498 0.99422 1.21006 0.93993 0.97681 1.00873 0.91052 0.91502 0.91525 0.85918 0.85697 0.77389 0.90976 0.91388 0.76603 0.76655 0.91825 0.94306 0.92528 0.90904 0.89418 0.89254 0.90608 0.85947 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.68 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.10 -0.87 9.68 -39.59 -0.38 -1.25 16 5 C -0.12 -1.08 5.00 -104.63 -0.52 -1.60 16 6 C 0.14 1.29 3.30 -27.88 -0.09 1.20 16 7 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 8 O -0.55 -5.50 12.88 -35.23 -0.45 -5.96 16 9 C 0.12 1.38 5.33 -4.03 -0.02 1.36 16 10 N -0.75 -10.44 5.45 -65.22 -0.36 -10.79 16 11 C 0.70 13.15 8.55 -86.92 -0.74 12.41 16 12 O -0.60 -13.66 16.33 5.29 0.09 -13.57 16 13 N -0.72 -13.65 5.46 -65.22 -0.36 -14.00 16 14 C 0.18 3.80 5.33 -4.04 -0.02 3.78 16 15 C -0.01 -0.33 0.84 -155.66 -0.13 -0.46 16 16 C -0.49 -12.96 9.35 -34.44 -0.32 -13.28 16 17 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 20 Si 0.88 21.71 24.80 -169.99 -4.22 17.50 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.26 -6.03 6.09 56.52 0.34 -5.69 16 24 C -0.18 -3.46 9.96 -26.70 -0.27 -3.72 16 25 C -0.19 -3.98 7.12 -26.70 -0.19 -4.17 16 26 C -0.10 -0.90 9.33 -39.58 -0.37 -1.27 16 27 C -0.12 -0.96 9.70 -39.59 -0.38 -1.34 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.38 2.91 7.40 45.56 0.34 3.24 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.82 8.37 -40.82 -0.34 4.48 16 37 H 0.40 6.95 8.48 -40.82 -0.35 6.61 16 38 H 0.06 1.53 7.76 -51.93 -0.40 1.13 16 39 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.09 1.94 6.56 -51.93 -0.34 1.60 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.12 0.86 6.62 -52.48 -0.35 0.51 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -33.54 380.64 -9.51 -43.05 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.54 Total: 13.27 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -4.18 Total: -9.20 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.06 Total: -50.82 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.37 Total: -19.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.22 Total: 17.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.54 -9.51 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.089 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds