Wall clock time and date at job start Tue Mar 31 2020 12:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 119.99864 * 2 1 4 4 C 1.38237 * 119.99829 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00219 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47079 * 24.99651 * 6 5 4 8 8 O 1.42904 * 109.47586 * 144.99975 * 6 5 4 9 9 C 1.53008 * 109.47099 * 264.99963 * 6 5 4 10 10 N 1.46505 * 109.46888 * 179.97438 * 9 6 5 11 11 C 1.34778 * 119.99452 * 180.27734 * 10 9 6 12 12 O 1.21589 * 120.00279 * 354.59814 * 11 10 9 13 13 N 1.34775 * 119.99694 * 174.60919 * 11 10 9 14 14 C 1.46503 * 119.99991 * 184.98366 * 13 11 10 15 15 C 1.52999 * 109.46984 * 185.26326 * 14 13 11 16 16 C 1.50696 * 115.54961 * 65.26746 * 15 14 13 17 17 H 1.07997 * 119.99611 * 271.46731 * 16 15 14 18 18 C 1.37875 * 120.00060 * 91.48044 * 16 15 14 19 19 N 1.31517 * 119.99821 * 182.16952 * 18 16 15 20 20 Si 1.86793 * 120.00193 * 2.16648 * 18 16 15 21 21 H 1.48500 * 109.47185 * 93.33060 * 20 18 16 22 22 H 1.48499 * 109.47244 * 213.33152 * 20 18 16 23 23 H 1.48503 * 109.47321 * 333.33160 * 20 18 16 24 24 C 1.53002 * 117.49864 * 279.59193 * 15 14 13 25 25 C 1.52998 * 117.49508 * 210.93677 * 15 14 13 26 26 C 1.38235 * 119.99903 * 0.24961 * 5 4 3 27 27 C 1.38231 * 120.00205 * 359.49617 * 26 5 4 28 28 H 1.08998 * 109.46992 * 89.99630 * 1 2 3 29 29 H 1.08999 * 109.47364 * 209.99815 * 1 2 3 30 30 H 1.09004 * 109.46747 * 329.99614 * 1 2 3 31 31 H 1.08002 * 120.00214 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.99840 * 179.97438 * 4 3 2 33 33 H 0.96701 * 113.99639 * 60.00146 * 8 6 5 34 34 H 1.08998 * 109.47021 * 59.99691 * 9 6 5 35 35 H 1.09001 * 109.46900 * 299.99797 * 9 6 5 36 36 H 0.96997 * 119.99986 * 0.02562 * 10 9 6 37 37 H 0.97005 * 120.00343 * 4.96969 * 13 11 10 38 38 H 1.08998 * 109.46689 * 305.25825 * 14 13 11 39 39 H 1.08998 * 109.47282 * 65.26058 * 14 13 11 40 40 H 0.97005 * 119.99793 * 179.97438 * 19 18 16 41 41 H 1.09003 * 117.49851 * 0.02562 * 24 15 14 42 42 H 1.08995 * 117.49883 * 145.02364 * 24 15 14 43 43 H 1.09006 * 117.49670 * 214.98045 * 25 15 14 44 44 H 1.09006 * 117.50148 * 359.96988 * 25 15 14 45 45 H 1.08005 * 119.99782 * 179.73045 * 26 5 4 46 46 H 1.08001 * 120.00345 * 180.23703 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7786 0.0000 -0.0028 7 1 6.1423 0.9312 0.4316 8 8 6.2557 -1.1040 0.7691 9 6 6.2875 -0.1251 -1.4403 10 7 7.7526 -0.1245 -1.4414 11 6 8.4255 -0.2201 -2.6053 12 8 7.8208 -0.4053 -3.6438 13 7 9.7687 -0.1105 -2.6180 14 6 10.4912 -0.1047 -3.8924 15 6 11.9976 -0.1029 -3.6247 16 6 12.5402 -1.3391 -2.9552 17 1 12.5633 -1.4034 -1.8774 18 6 13.0075 -2.3878 -3.7186 19 7 13.4414 -3.4837 -3.1351 20 14 13.0241 -2.2522 -5.5815 21 1 14.3491 -1.7536 -6.0298 22 1 12.7707 -3.5886 -6.1774 23 1 11.9657 -1.3066 -6.0185 24 6 12.6511 1.2353 -3.2738 25 6 12.8955 0.6000 -4.6448 26 6 3.5805 -1.1971 -0.0074 27 6 2.1982 -1.1972 -0.0015 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 -0.0010 33 1 5.9701 -1.9670 0.4394 34 1 5.9237 0.7169 -2.0291 35 1 5.9238 -1.0563 -1.8747 36 1 8.2382 -0.0518 -0.6049 37 1 10.2572 -0.0352 -1.7833 38 1 10.2251 -0.9933 -4.4649 39 1 10.2218 0.7867 -4.4589 40 1 13.7698 -4.2217 -3.6723 41 1 12.0078 2.1143 -3.2332 42 1 13.4738 1.2215 -2.5589 43 1 13.8789 0.1685 -4.8313 44 1 12.4131 1.0607 -5.5069 45 1 4.1205 -2.1324 -0.0126 46 1 1.6582 -2.1325 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797561418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:28 Heat of formation + Delta-G solvation = -61.464778 kcal Electronic energy + Delta-G solvation = -25737.452168 eV Core-core repulsion = 22012.441225 eV Total energy + Delta-G solvation = -3725.010944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.18054 -40.54238 -38.90668 -38.20802 -35.27646 -34.95542 -34.18789 -33.82726 -31.83946 -30.38641 -28.42048 -27.48251 -26.39006 -24.01158 -23.50123 -23.37314 -21.94773 -21.51963 -21.06159 -19.32822 -18.67534 -18.24328 -17.22217 -17.13592 -16.78893 -16.40003 -16.23652 -15.97975 -15.62038 -15.37796 -15.16466 -14.85396 -14.70245 -14.60655 -14.44563 -14.30140 -14.27059 -13.80077 -13.38385 -13.10925 -13.07584 -12.97257 -12.74370 -12.53139 -12.15644 -12.10444 -11.96101 -11.82911 -11.56972 -11.42212 -11.16065 -10.98706 -10.61437 -10.36767 -10.28917 -9.84849 -9.62967 -9.47000 -8.29133 -6.35083 0.31810 0.48175 1.33564 1.40819 1.51739 1.77629 2.20102 2.37499 2.75974 3.06245 3.11927 3.40632 3.49328 3.70747 3.86138 3.87611 4.04955 4.08815 4.10712 4.15419 4.37903 4.43540 4.45792 4.55230 4.55350 4.63419 4.77920 4.82950 4.84671 4.87060 4.89743 4.93398 5.11291 5.17371 5.25710 5.32645 5.44525 5.49474 5.51370 5.60497 5.64650 5.69181 5.71370 6.07578 6.10425 6.29156 6.62404 6.73136 7.17891 7.34979 7.64109 8.85535 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.002290 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.909124 B =12222.338188 C =12442.638797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.154 3.846 7 H 0.125 0.875 8 O -0.561 6.561 9 C 0.118 3.882 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.645 6.645 13 N -0.717 5.717 14 C 0.186 3.814 15 C -0.041 4.041 16 C -0.476 4.476 17 H 0.044 0.956 18 C 0.020 3.980 19 N -0.946 5.946 20 Si 0.934 3.066 21 H -0.268 1.268 22 H -0.307 1.307 23 H -0.238 1.238 24 C -0.151 4.151 25 C -0.193 4.193 26 C -0.117 4.117 27 C -0.131 4.131 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.386 0.614 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.407 0.593 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.458 11.048 7.978 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.130 4.130 5 C -0.134 4.134 6 C 0.095 3.905 7 H 0.143 0.857 8 O -0.368 6.368 9 C -0.007 4.007 10 N -0.386 5.386 11 C 0.397 3.603 12 O -0.527 6.527 13 N -0.371 5.371 14 C 0.061 3.939 15 C -0.042 4.042 16 C -0.513 4.513 17 H 0.063 0.937 18 C -0.178 4.178 19 N -0.586 5.586 20 Si 0.760 3.240 21 H -0.193 1.193 22 H -0.235 1.235 23 H -0.161 1.161 24 C -0.188 4.188 25 C -0.230 4.230 26 C -0.135 4.135 27 C -0.149 4.149 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.242 0.758 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.150 0.850 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.656 11.218 7.355 27.195 hybrid contribution 0.645 -1.147 -0.500 1.408 sum -23.011 10.071 6.856 26.037 Atomic orbital electron populations 1.20851 0.89581 1.03686 1.02999 1.20336 0.97529 0.93193 0.98395 1.21321 0.94118 0.98535 1.00767 1.21247 0.94809 0.97850 0.99076 1.20371 0.95474 0.94536 1.03016 1.20907 0.88870 0.91828 0.88921 0.85709 1.86608 1.76777 1.17563 1.55886 1.21869 0.78672 1.02367 0.97794 1.44799 1.06972 1.79583 1.07296 1.16155 0.82089 0.77860 0.84196 1.90844 1.69059 1.59308 1.33531 1.44871 1.04194 1.77430 1.10571 1.20679 0.90201 0.98958 0.84032 1.19478 0.89863 0.93123 1.01770 1.20357 1.39310 0.98579 0.93095 0.93732 1.25788 0.94372 0.94632 1.02995 1.70028 1.44650 1.06296 1.37584 0.85974 0.80067 0.76857 0.81103 1.19325 1.23466 1.16082 1.22916 1.03010 0.95696 0.97141 1.23009 1.00808 1.05348 0.93856 1.21129 0.94909 0.97948 0.99470 1.21275 0.94037 0.98606 1.00952 0.90556 0.90781 0.90540 0.84151 0.84294 0.76396 0.91165 0.92560 0.75251 0.75801 0.95123 0.92570 0.92762 0.87659 0.89576 0.90388 0.88125 0.85023 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.36 5.88 -19.87 -0.12 -1.48 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.65 16 4 C -0.11 -1.74 9.68 22.27 0.22 -1.52 16 5 C -0.13 -2.28 5.00 -19.87 -0.10 -2.38 16 6 C 0.15 2.68 3.30 29.85 0.10 2.78 16 7 H 0.13 1.88 8.05 -2.39 -0.02 1.86 16 8 O -0.56 -10.59 12.88 -148.98 -1.92 -12.51 16 9 C 0.12 2.70 5.33 86.38 0.46 3.16 16 10 N -0.73 -19.60 5.45 -478.51 -2.61 -22.21 16 11 C 0.70 25.68 8.55 179.05 1.53 27.21 16 12 O -0.64 -28.98 16.33 -4.00 -0.07 -29.05 16 13 N -0.72 -26.55 5.46 -478.53 -2.61 -29.16 16 14 C 0.19 7.74 5.33 86.38 0.46 8.20 16 15 C -0.04 -1.76 0.84 -52.93 -0.04 -1.80 16 16 C -0.48 -25.47 9.35 25.60 0.24 -25.23 16 17 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 18 C 0.02 1.13 5.47 84.65 0.46 1.59 16 19 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 20 Si 0.93 44.78 24.80 68.60 1.70 46.48 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 23 H -0.24 -10.61 6.09 99.48 0.61 -10.00 16 24 C -0.15 -5.28 9.96 30.62 0.30 -4.97 16 25 C -0.19 -7.37 7.12 30.62 0.22 -7.15 16 26 C -0.12 -1.93 9.33 22.27 0.21 -1.72 16 27 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.39 5.66 7.40 -74.06 -0.55 5.11 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.41 9.31 8.37 -92.71 -0.78 8.53 16 37 H 0.41 13.74 8.48 -92.70 -0.79 12.95 16 38 H 0.03 1.46 7.76 -2.39 -0.02 1.44 16 39 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 40 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 41 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.08 3.18 6.56 -2.38 -0.02 3.17 16 44 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 45 H 0.13 1.78 6.62 -2.91 -0.02 1.76 16 46 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -73.17 380.64 -1.33 -74.50 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -1.20 Total: 37.12 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 5.08 Total: -7.13 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.92 Total: -109.41 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.98 Total: -41.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.70 Total: 46.48 kcal Total: -73.17 -1.33 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.030 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds