Wall clock time and date at job start Tue Mar 31 2020 12:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.85191 * 2 1 4 4 C 1.38256 * 120.06312 * 180.08723 * 3 2 1 5 5 C 1.38581 * 119.87614 * 0.02562 * 4 3 2 6 6 C 1.39211 * 120.17165 * 359.85031 * 5 4 3 7 7 C 1.38207 * 119.85257 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.79171 * 180.32510 * 6 5 4 9 9 C 1.42953 * 117.77275 * 339.61392 * 8 6 5 10 10 H 1.09004 * 109.57944 * 289.67875 * 9 8 6 11 11 C 1.53000 * 109.57981 * 169.28110 * 9 8 6 12 12 C 1.53529 * 108.81928 * 49.47558 * 9 8 6 13 13 N 1.40553 * 120.09234 * 179.60235 * 5 4 3 14 14 C 1.34780 * 121.15853 * 346.34442 * 13 5 4 15 15 O 1.21283 * 120.00452 * 354.30215 * 14 13 5 16 16 C 1.50707 * 119.99250 * 174.29811 * 14 13 5 17 17 H 1.08993 * 109.47268 * 325.32538 * 16 14 13 18 18 N 1.46899 * 109.46671 * 205.32530 * 16 14 13 19 19 C 1.53001 * 109.46775 * 85.32980 * 16 14 13 20 20 C 1.53002 * 109.46685 * 185.68623 * 19 16 14 21 21 C 1.50706 * 109.46930 * 179.97438 * 20 19 16 22 22 H 1.07997 * 119.99797 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99947 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47551 * 89.99736 * 25 23 21 27 27 H 1.48500 * 109.47217 * 209.99981 * 25 23 21 28 28 H 1.48508 * 109.47174 * 329.99561 * 25 23 21 29 29 H 1.08995 * 109.47258 * 89.99862 * 1 2 3 30 30 H 1.08997 * 109.46620 * 210.00056 * 1 2 3 31 31 H 1.09003 * 109.46645 * 329.99748 * 1 2 3 32 32 H 1.08001 * 119.97344 * 0.11324 * 3 2 1 33 33 H 1.08000 * 120.06793 * 179.74137 * 4 3 2 34 34 H 1.07999 * 119.97488 * 359.96340 * 7 2 1 35 35 H 1.08994 * 109.47528 * 59.99974 * 11 9 8 36 36 H 1.09005 * 109.47228 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.46945 * 299.99512 * 11 9 8 38 38 H 1.09000 * 109.83636 * 61.35929 * 12 9 8 39 39 H 1.08998 * 109.83752 * 182.24802 * 12 9 8 40 40 H 1.00904 * 110.99810 * 300.00028 * 18 16 14 41 41 H 1.00902 * 111.00474 * 63.95593 * 18 16 14 42 42 H 1.09001 * 109.47112 * 305.67820 * 19 16 14 43 43 H 1.08988 * 109.47545 * 65.68409 * 19 16 14 44 44 H 1.09001 * 109.46690 * 299.99456 * 20 19 16 45 45 H 1.08996 * 109.47242 * 59.99258 * 20 19 16 46 46 H 0.97000 * 119.99769 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1993 0.0000 4 6 3.5778 1.2044 -0.0018 5 6 4.2726 0.0053 -0.0042 6 6 3.5820 -1.2034 -0.0016 7 6 2.1950 -1.1987 0.0005 8 8 4.2505 -2.3866 0.0028 9 6 5.6111 -2.3846 -0.4360 10 1 5.6477 -2.2119 -1.5117 11 6 6.2576 -3.7319 -0.1080 12 6 6.3643 -1.2617 0.2912 13 7 5.6781 0.0052 -0.0145 14 6 6.3735 1.1253 -0.2944 15 8 5.7905 2.1297 -0.6440 16 6 7.8757 1.1295 -0.1730 17 1 8.1749 0.4888 0.6564 18 7 8.3430 2.5001 0.0737 19 6 8.4937 0.6057 -1.4709 20 6 10.0084 0.4760 -1.2984 21 6 10.6171 -0.0405 -2.5767 22 1 9.9866 -0.2552 -3.4268 23 6 11.9788 -0.2400 -2.6604 24 7 12.7465 0.0210 -1.6249 25 14 12.7332 -0.8808 -4.2445 26 1 13.0977 0.2636 -5.1177 27 1 13.9508 -1.6702 -3.9289 28 1 11.7508 -1.7456 -4.9462 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6524 2.1330 0.0018 33 1 4.1155 2.1410 -0.0060 34 1 1.6522 -2.1324 0.0016 35 1 5.7143 -4.5289 -0.6157 36 1 7.2949 -3.7283 -0.4429 37 1 6.2244 -3.8983 0.9687 38 1 6.3479 -1.4413 1.3662 39 1 7.3950 -1.2195 -0.0607 40 1 8.0777 3.1141 -0.6819 41 1 8.0003 2.8456 0.9576 42 1 8.0700 -0.3705 -1.7070 43 1 8.2786 1.3009 -2.2822 44 1 10.4320 1.4522 -1.0624 45 1 10.2235 -0.2192 -0.4870 46 1 13.7045 -0.1197 -1.6837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818123601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:48 Heat of formation + Delta-G solvation = -49.310847 kcal Electronic energy + Delta-G solvation = -27268.169582 eV Core-core repulsion = 23543.685672 eV Total energy + Delta-G solvation = -3724.483910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.53636 -39.45759 -38.12352 -35.63690 -35.50525 -33.21987 -32.88611 -31.51122 -30.25066 -29.80486 -27.53754 -26.90064 -25.84137 -23.71995 -23.06509 -22.61050 -20.91615 -20.33966 -19.28948 -18.05696 -17.59552 -16.94469 -16.33004 -16.15587 -15.63525 -15.34389 -15.10219 -14.99534 -14.42842 -14.29862 -14.05524 -13.81207 -13.72902 -13.40888 -13.30890 -12.81663 -12.62806 -12.39893 -12.36846 -12.11585 -12.07813 -11.77534 -11.69179 -11.60755 -11.35926 -10.95136 -10.84101 -10.72455 -10.60097 -10.14651 -9.95172 -9.83498 -9.47409 -9.09342 -8.58641 -8.43326 -8.29947 -7.79329 -6.00702 -4.03428 1.13720 1.32115 2.48602 2.58181 3.03896 3.30569 3.37311 3.39612 3.69949 4.22968 4.31783 4.45353 4.65481 4.72396 4.75801 4.82007 4.85679 4.96700 5.13864 5.17178 5.27097 5.30513 5.35368 5.36461 5.41442 5.46990 5.51096 5.62795 5.66020 5.71655 5.84376 5.91831 6.08649 6.16132 6.25805 6.41173 6.50366 6.53049 6.77453 6.93659 7.09645 7.27703 7.32295 7.63812 7.66796 7.85918 7.97867 8.03999 8.39773 9.04142 9.60399 11.10054 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.003300 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.133410 B = 8481.851107 C = 9357.254469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.112 4.112 5 C 0.077 3.923 6 C 0.098 3.902 7 C -0.131 4.131 8 O -0.311 6.311 9 C 0.076 3.924 10 H 0.081 0.919 11 C -0.145 4.145 12 C 0.063 3.937 13 N -0.555 5.555 14 C 0.488 3.512 15 O -0.526 6.526 16 C 0.081 3.919 17 H 0.101 0.899 18 N -0.804 5.804 19 C -0.098 4.098 20 C 0.033 3.967 21 C -0.524 4.524 22 H 0.052 0.948 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.889 3.111 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.350 0.650 41 H 0.335 0.665 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.013 0.987 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.507 -3.593 6.627 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.132 4.132 5 C -0.017 4.017 6 C 0.051 3.949 7 C -0.150 4.150 8 O -0.226 6.226 9 C 0.019 3.981 10 H 0.098 0.902 11 C -0.202 4.202 12 C -0.059 4.059 13 N -0.280 5.280 14 C 0.277 3.723 15 O -0.403 6.403 16 C -0.035 4.035 17 H 0.118 0.882 18 N -0.332 5.332 19 C -0.136 4.136 20 C -0.004 4.004 21 C -0.563 4.563 22 H 0.070 0.930 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.717 3.283 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.180 0.820 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.822 -3.520 6.529 21.164 hybrid contribution -0.369 -0.057 -0.925 0.998 sum -20.191 -3.577 5.604 21.257 Atomic orbital electron populations 1.20739 0.90857 1.02672 1.02293 1.19656 0.96010 0.92282 1.00185 1.20921 0.93546 0.97496 1.03065 1.21737 0.94206 0.98302 0.98920 1.18127 0.83013 0.94028 1.06526 1.18529 0.91529 0.83162 1.01687 1.20201 0.90136 0.98567 1.06084 1.86023 1.25856 1.28513 1.82180 1.22816 0.79764 0.96766 0.98751 0.90153 1.21791 1.01205 0.93893 1.03324 1.22930 0.99126 0.82199 1.01670 1.46023 1.03762 1.11292 1.66958 1.23098 0.92749 0.81622 0.74821 1.90497 1.70975 1.33310 1.45489 1.21934 0.84818 0.93834 1.02930 0.88166 1.58998 1.64441 1.02042 1.07722 1.21741 1.00962 0.98797 0.92106 1.19018 0.86590 0.98305 0.96532 1.21243 0.92307 1.43880 0.98846 0.92964 1.24981 0.97357 0.95678 0.96191 1.69971 1.04803 1.48744 1.29539 0.86651 0.78796 0.78967 0.83904 1.20683 1.21235 1.19975 0.91206 0.91588 0.91503 0.85735 0.82044 0.85080 0.90866 0.89166 0.91165 0.89371 0.86071 0.83534 0.85266 0.92922 0.92415 0.94543 0.96819 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.00 36.01 0.36 -0.48 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.60 9.69 -39.56 -0.38 -1.98 16 4 C -0.11 -1.64 8.94 -39.45 -0.35 -1.99 16 5 C 0.08 1.16 6.33 -83.37 -0.53 0.63 16 6 C 0.10 1.36 6.51 -39.05 -0.25 1.11 16 7 C -0.13 -1.58 9.62 -39.42 -0.38 -1.96 16 8 O -0.31 -4.10 9.97 -19.43 -0.19 -4.29 16 9 C 0.08 0.88 3.58 -26.46 -0.09 0.79 16 10 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.14 -1.29 9.58 37.16 0.36 -0.94 16 12 C 0.06 0.77 5.39 -3.33 -0.02 0.75 16 13 N -0.56 -8.16 3.01 -112.35 -0.34 -8.50 16 14 C 0.49 7.84 6.79 -10.98 -0.07 7.77 16 15 O -0.53 -9.38 13.16 5.55 0.07 -9.30 16 16 C 0.08 1.31 2.29 -68.86 -0.16 1.15 16 17 H 0.10 1.52 7.04 -51.93 -0.37 1.15 16 18 N -0.80 -12.89 8.52 -5.65 -0.05 -12.94 16 19 C -0.10 -1.89 4.47 -26.73 -0.12 -2.01 16 20 C 0.03 0.80 4.87 -27.88 -0.14 0.66 16 21 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 22 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 25 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.16 2.57 5.16 -52.57 -0.27 2.30 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.48 5.04 -51.93 -0.26 1.21 16 40 H 0.35 5.67 8.56 -39.29 -0.34 5.33 16 41 H 0.34 4.61 9.06 -39.29 -0.36 4.25 16 42 H 0.05 0.96 6.91 -51.93 -0.36 0.60 16 43 H 0.06 1.18 8.14 -51.94 -0.42 0.76 16 44 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -31.85 370.34 -8.98 -40.83 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.96 Total: 8.91 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.81 Total: -11.08 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.35 Total: -46.87 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.12 Total: -13.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.85 -8.98 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.483 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds