Wall clock time and date at job start Tue Mar 31 2020 12:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.85191 * 2 1 4 4 C 1.38256 * 120.06312 * 180.08723 * 3 2 1 5 5 C 1.38581 * 119.87614 * 0.02562 * 4 3 2 6 6 C 1.39211 * 120.17165 * 359.85031 * 5 4 3 7 7 C 1.38207 * 119.85257 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.79171 * 180.32510 * 6 5 4 9 9 C 1.42953 * 117.77275 * 339.61392 * 8 6 5 10 10 H 1.09004 * 109.57944 * 289.67875 * 9 8 6 11 11 C 1.53000 * 109.57981 * 169.28110 * 9 8 6 12 12 C 1.53529 * 108.81928 * 49.47558 * 9 8 6 13 13 N 1.40553 * 120.09234 * 179.60235 * 5 4 3 14 14 C 1.34780 * 121.15853 * 346.34442 * 13 5 4 15 15 O 1.21283 * 120.00452 * 354.30215 * 14 13 5 16 16 C 1.50707 * 119.99250 * 174.29811 * 14 13 5 17 17 H 1.08993 * 109.47268 * 325.32538 * 16 14 13 18 18 N 1.46899 * 109.46671 * 205.32530 * 16 14 13 19 19 C 1.53001 * 109.46775 * 85.32980 * 16 14 13 20 20 C 1.53002 * 109.46685 * 185.68623 * 19 16 14 21 21 C 1.50706 * 109.46930 * 179.97438 * 20 19 16 22 22 H 1.07997 * 119.99797 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99947 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47551 * 89.99736 * 25 23 21 27 27 H 1.48500 * 109.47217 * 209.99981 * 25 23 21 28 28 H 1.48508 * 109.47174 * 329.99561 * 25 23 21 29 29 H 1.08995 * 109.47258 * 89.99862 * 1 2 3 30 30 H 1.08997 * 109.46620 * 210.00056 * 1 2 3 31 31 H 1.09003 * 109.46645 * 329.99748 * 1 2 3 32 32 H 1.08001 * 119.97344 * 0.11324 * 3 2 1 33 33 H 1.08000 * 120.06793 * 179.74137 * 4 3 2 34 34 H 1.07999 * 119.97488 * 359.96340 * 7 2 1 35 35 H 1.08994 * 109.47528 * 59.99974 * 11 9 8 36 36 H 1.09005 * 109.47228 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.46945 * 299.99512 * 11 9 8 38 38 H 1.09000 * 109.83636 * 61.35929 * 12 9 8 39 39 H 1.08998 * 109.83752 * 182.24802 * 12 9 8 40 40 H 1.00904 * 110.99810 * 300.00028 * 18 16 14 41 41 H 1.00902 * 111.00474 * 63.95593 * 18 16 14 42 42 H 1.09001 * 109.47112 * 305.67820 * 19 16 14 43 43 H 1.08988 * 109.47545 * 65.68409 * 19 16 14 44 44 H 1.09001 * 109.46690 * 299.99456 * 20 19 16 45 45 H 1.08996 * 109.47242 * 59.99258 * 20 19 16 46 46 H 0.97000 * 119.99769 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1993 0.0000 4 6 3.5778 1.2044 -0.0018 5 6 4.2726 0.0053 -0.0042 6 6 3.5820 -1.2034 -0.0016 7 6 2.1950 -1.1987 0.0005 8 8 4.2505 -2.3866 0.0028 9 6 5.6111 -2.3846 -0.4360 10 1 5.6477 -2.2119 -1.5117 11 6 6.2576 -3.7319 -0.1080 12 6 6.3643 -1.2617 0.2912 13 7 5.6781 0.0052 -0.0145 14 6 6.3735 1.1253 -0.2944 15 8 5.7905 2.1297 -0.6440 16 6 7.8757 1.1295 -0.1730 17 1 8.1749 0.4888 0.6564 18 7 8.3430 2.5001 0.0737 19 6 8.4937 0.6057 -1.4709 20 6 10.0084 0.4760 -1.2984 21 6 10.6171 -0.0405 -2.5767 22 1 9.9866 -0.2552 -3.4268 23 6 11.9788 -0.2400 -2.6604 24 7 12.7465 0.0210 -1.6249 25 14 12.7332 -0.8808 -4.2445 26 1 13.0977 0.2636 -5.1177 27 1 13.9508 -1.6702 -3.9289 28 1 11.7508 -1.7456 -4.9462 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6524 2.1330 0.0018 33 1 4.1155 2.1410 -0.0060 34 1 1.6522 -2.1324 0.0016 35 1 5.7143 -4.5289 -0.6157 36 1 7.2949 -3.7283 -0.4429 37 1 6.2244 -3.8983 0.9687 38 1 6.3479 -1.4413 1.3662 39 1 7.3950 -1.2195 -0.0607 40 1 8.0777 3.1141 -0.6819 41 1 8.0003 2.8456 0.9576 42 1 8.0700 -0.3705 -1.7070 43 1 8.2786 1.3009 -2.2822 44 1 10.4320 1.4522 -1.0624 45 1 10.2235 -0.2192 -0.4870 46 1 13.7045 -0.1197 -1.6837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818123601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:48 Heat of formation + Delta-G solvation = -69.292731 kcal Electronic energy + Delta-G solvation = -27269.036061 eV Core-core repulsion = 23543.685672 eV Total energy + Delta-G solvation = -3725.350389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61848 -40.62257 -39.06385 -37.04232 -36.72569 -34.89821 -34.05259 -32.44738 -32.02011 -30.73959 -28.77935 -27.87722 -27.25986 -25.24625 -24.01333 -23.65122 -22.44021 -21.60499 -20.44182 -19.08885 -18.79164 -18.38651 -17.90061 -17.21578 -16.99882 -16.55629 -16.51571 -16.15655 -16.01017 -15.33665 -15.04425 -15.00782 -14.76913 -14.43306 -14.35949 -14.15087 -13.89588 -13.57549 -13.50385 -13.35876 -13.07937 -12.94305 -12.82017 -12.66488 -12.58537 -12.43878 -12.33833 -12.31054 -11.76721 -11.74167 -11.52825 -11.21002 -11.12165 -10.89932 -10.49671 -9.75428 -9.51860 -8.82649 -8.14586 -6.24562 0.11466 0.32278 1.28358 1.42122 1.43172 1.46748 1.53326 2.09985 2.43877 2.70827 3.12376 3.18986 3.30035 3.51441 3.68352 3.79538 3.85518 3.94988 4.00163 4.12744 4.15887 4.24251 4.26931 4.38951 4.43754 4.56166 4.68837 4.78689 4.82912 4.87517 4.88006 4.97939 5.07673 5.09883 5.16307 5.22205 5.25940 5.44912 5.56036 5.58373 5.79699 5.80935 5.92761 5.95991 6.05971 6.28299 6.30221 6.41336 6.75300 6.93190 7.43732 8.96433 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.003300 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.133410 B = 8481.851107 C = 9357.254469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.131 4.131 5 C 0.049 3.951 6 C 0.086 3.914 7 C -0.135 4.135 8 O -0.314 6.314 9 C 0.075 3.925 10 H 0.069 0.931 11 C -0.139 4.139 12 C 0.059 3.941 13 N -0.554 5.554 14 C 0.489 3.511 15 O -0.548 6.548 16 C 0.091 3.909 17 H 0.113 0.887 18 N -0.813 5.813 19 C -0.083 4.083 20 C 0.043 3.957 21 C -0.543 4.543 22 H 0.054 0.946 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.956 3.044 26 H -0.278 1.278 27 H -0.281 1.281 28 H -0.264 1.264 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.348 0.652 41 H 0.349 0.651 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.007 0.993 45 H 0.000 1.000 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -4.991 6.408 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.150 4.150 5 C -0.045 4.045 6 C 0.039 3.961 7 C -0.153 4.153 8 O -0.229 6.229 9 C 0.018 3.982 10 H 0.087 0.913 11 C -0.196 4.196 12 C -0.062 4.062 13 N -0.278 5.278 14 C 0.278 3.722 15 O -0.427 6.427 16 C -0.025 4.025 17 H 0.131 0.869 18 N -0.342 5.342 19 C -0.121 4.121 20 C 0.006 3.994 21 C -0.581 4.581 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.207 1.207 28 H -0.188 1.188 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.018 0.982 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.681 -4.940 6.322 23.118 hybrid contribution 0.111 0.387 -0.826 0.919 sum -21.570 -4.553 5.496 22.720 Atomic orbital electron populations 1.20824 0.88020 1.04126 1.03408 1.20078 0.97963 0.91398 0.97908 1.21200 0.92698 0.99063 1.02387 1.21719 0.95438 0.97607 1.00284 1.18338 0.83010 0.94774 1.08368 1.18792 0.92364 0.82953 1.01981 1.20575 0.89564 0.99914 1.05287 1.86023 1.26415 1.28213 1.82228 1.22936 0.79349 0.97908 0.97994 0.91332 1.21802 1.01273 0.92397 1.04143 1.23112 0.98881 0.81459 1.02769 1.46012 1.04090 1.11470 1.66245 1.22850 0.92449 0.81896 0.74971 1.90495 1.71253 1.34240 1.46662 1.21701 0.85096 0.94071 1.01595 0.86912 1.58991 1.64748 1.02040 1.08464 1.21452 0.97873 0.99385 0.93431 1.18805 0.89618 0.95984 0.95041 1.21680 0.92858 1.43680 0.99879 0.92754 1.25834 0.97969 0.95920 0.99522 1.70094 1.05126 1.49876 1.31671 0.85592 0.78079 0.78469 0.79763 1.20418 1.20691 1.18779 0.90076 0.90100 0.90187 0.83720 0.83832 0.83018 0.90030 0.88574 0.90155 0.87833 0.86234 0.83758 0.83785 0.91684 0.93746 0.97457 0.98153 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.00 71.24 0.71 -0.57 16 2 C -0.07 -1.45 5.88 -19.86 -0.12 -1.56 16 3 C -0.13 -3.12 9.69 22.28 0.22 -2.90 16 4 C -0.13 -3.85 8.94 22.36 0.20 -3.65 16 5 C 0.05 1.47 6.33 38.06 0.24 1.71 16 6 C 0.09 2.32 6.51 22.62 0.15 2.47 16 7 C -0.13 -2.98 9.62 22.37 0.22 -2.77 16 8 O -0.31 -7.90 9.97 -92.44 -0.92 -8.82 16 9 C 0.07 1.68 3.58 30.77 0.11 1.79 16 10 H 0.07 1.68 8.14 -2.38 -0.02 1.67 16 11 C -0.14 -2.25 9.58 71.98 0.69 -1.56 16 12 C 0.06 1.41 5.39 86.41 0.47 1.88 16 13 N -0.55 -16.32 3.01 -627.75 -1.89 -18.21 16 14 C 0.49 15.97 6.79 87.66 0.60 16.57 16 15 O -0.55 -20.07 13.16 -3.04 -0.04 -20.11 16 16 C 0.09 3.00 2.29 44.17 0.10 3.10 16 17 H 0.11 3.41 7.04 -2.39 -0.02 3.39 16 18 N -0.81 -26.62 8.52 -171.80 -1.46 -28.09 16 19 C -0.08 -3.27 4.47 30.60 0.14 -3.13 16 20 C 0.04 2.13 4.87 29.85 0.15 2.28 16 21 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 22 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 23 C 0.01 0.32 5.46 84.65 0.46 0.78 16 24 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 25 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.76 8.08 -2.39 -0.02 0.75 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.14 4.74 5.16 -4.25 -0.02 4.72 16 34 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.12 2.86 5.04 -2.39 -0.01 2.85 16 40 H 0.35 11.63 8.56 -89.69 -0.77 10.86 16 41 H 0.35 9.69 9.06 -89.69 -0.81 8.88 16 42 H 0.06 2.37 6.91 -2.39 -0.02 2.35 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.01 0.39 7.77 -2.39 -0.02 0.37 16 45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.92 370.34 1.97 -66.95 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.58 Total: 32.87 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.55 Total: -15.26 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.07 Total: -101.14 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.96 Total: -28.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.92 1.97 -66.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.343 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds