Wall clock time and date at job start Tue Mar 31 2020 12:34:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38281 * 119.85402 * 2 1
4 4 C 1.38248 * 120.06088 * 180.02562 * 3 2 1
5 5 C 1.38579 * 119.88021 * 0.02562 * 4 3 2
6 6 C 1.39208 * 120.17272 * 359.88851 * 5 4 3
7 7 C 1.38209 * 119.85153 * 180.02562 * 2 1 3
8 8 O 1.35900 * 120.79505 * 180.21274 * 6 5 4
9 9 C 1.42958 * 117.76743 * 339.65647 * 8 6 5
10 10 H 1.08998 * 109.58357 * 289.70278 * 9 8 6
11 11 C 1.52997 * 109.58172 * 169.29836 * 9 8 6
12 12 C 1.53535 * 108.80545 * 49.50117 * 9 8 6
13 13 N 1.40554 * 120.09055 * 179.64610 * 5 4 3
14 14 C 1.34778 * 121.16011 * 346.48291 * 13 5 4
15 15 O 1.21291 * 120.00263 * 354.20788 * 14 13 5
16 16 C 1.50698 * 119.99459 * 174.20827 * 14 13 5
17 17 H 1.09003 * 109.47667 * 41.51951 * 16 14 13
18 18 N 1.46902 * 109.46684 * 161.51862 * 16 14 13
19 19 C 1.52995 * 109.47385 * 281.51372 * 16 14 13
20 20 C 1.52996 * 109.47604 * 175.00236 * 19 16 14
21 21 C 1.50695 * 109.47571 * 179.97438 * 20 19 16
22 22 H 1.08002 * 119.99905 * 0.02562 * 21 20 19
23 23 C 1.37880 * 120.00146 * 179.97438 * 21 20 19
24 24 N 1.31509 * 120.00053 * 0.02562 * 23 21 20
25 25 Si 1.86799 * 119.99769 * 180.02562 * 23 21 20
26 26 H 1.48505 * 109.47256 * 90.00421 * 25 23 21
27 27 H 1.48502 * 109.46948 * 209.99793 * 25 23 21
28 28 H 1.48496 * 109.47559 * 330.00547 * 25 23 21
29 29 H 1.08990 * 109.47131 * 269.97490 * 1 2 3
30 30 H 1.09000 * 109.47007 * 29.97863 * 1 2 3
31 31 H 1.09004 * 109.46848 * 149.97169 * 1 2 3
32 32 H 1.07997 * 119.96652 * 0.04490 * 3 2 1
33 33 H 1.07999 * 120.06140 * 179.97438 * 4 3 2
34 34 H 1.08001 * 119.97610 * 0.02562 * 7 2 1
35 35 H 1.08995 * 109.47619 * 60.00223 * 11 9 8
36 36 H 1.08999 * 109.47115 * 180.02562 * 11 9 8
37 37 H 1.09000 * 109.47029 * 299.99656 * 11 9 8
38 38 H 1.09006 * 109.83962 * 61.32669 * 12 9 8
39 39 H 1.09005 * 109.83651 * 182.29217 * 12 9 8
40 40 H 1.00897 * 111.00071 * 59.99833 * 18 16 14
41 41 H 1.00899 * 110.99901 * 183.94996 * 18 16 14
42 42 H 1.08999 * 109.47426 * 295.00787 * 19 16 14
43 43 H 1.09003 * 109.46764 * 55.00237 * 19 16 14
44 44 H 1.08999 * 109.47178 * 300.00702 * 20 19 16
45 45 H 1.09010 * 109.46734 * 60.00027 * 20 19 16
46 46 H 0.96995 * 120.00291 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1954 1.1993 0.0000
4 6 3.5778 1.2043 -0.0005
5 6 4.2725 0.0052 -0.0016
6 6 3.5820 -1.2035 0.0002
7 6 2.1950 -1.1987 -0.0005
8 8 4.2505 -2.3867 0.0035
9 6 5.6112 -2.3841 -0.4347
10 1 5.6484 -2.2097 -1.5100
11 6 6.2576 -3.7319 -0.1084
12 6 6.3640 -1.2624 0.2949
13 7 5.6781 0.0051 -0.0097
14 6 6.3740 1.1258 -0.2860
15 8 5.7916 2.1306 -0.6358
16 6 7.8757 1.1304 -0.1602
17 1 8.2768 0.1995 -0.5611
18 7 8.4265 2.2653 -0.9128
19 6 8.2636 1.2597 1.3141
20 6 9.7824 1.1393 1.4544
21 6 10.1645 1.2674 2.9065
22 1 9.4005 1.4190 3.6546
23 6 11.4895 1.1899 3.2801
24 7 12.4198 1.0048 2.3692
25 14 11.9630 1.3479 5.0801
26 1 11.9640 0.0038 5.7116
27 1 13.3188 1.9448 5.1847
28 1 10.9829 2.2205 5.7752
29 1 -0.3633 -0.0005 1.0276
30 1 -0.3633 0.8902 -0.5135
31 1 -0.3633 -0.8898 -0.5143
32 1 1.6525 2.1329 0.0007
33 1 4.1155 2.1410 -0.0010
34 1 1.6521 -2.1324 -0.0014
35 1 5.7146 -4.5281 -0.6176
36 1 7.2950 -3.7278 -0.4428
37 1 6.2239 -3.8999 0.9681
38 1 6.3465 -1.4433 1.3697
39 1 7.3948 -1.2189 -0.0570
40 1 8.0696 3.1406 -0.5599
41 1 9.4354 2.2538 -0.8975
42 1 7.9396 2.2297 1.6914
43 1 7.7819 0.4676 1.8874
44 1 10.1064 0.1694 1.0771
45 1 10.2641 1.9315 0.8811
46 1 13.3518 0.9499 2.6320
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000818123602.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:51
Heat of formation + Delta-G solvation = -49.100460 kcal
Electronic energy + Delta-G solvation = -27217.097099 eV
Core-core repulsion = 23492.622313 eV
Total energy + Delta-G solvation = -3724.474787 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.47168 -39.33696 -38.08301 -35.78802 -35.48251 -33.24057 -32.91386 -31.48703
-30.01525 -29.75899 -27.60743 -26.91237 -25.80016 -23.89171 -23.06851 -22.57860
-21.06854 -20.23829 -19.24883 -18.04138 -17.70697 -16.93947 -16.34530 -16.08708
-15.64467 -15.17311 -14.86156 -14.64850 -14.53366 -14.09909 -13.99829 -13.76342
-13.67249 -13.53312 -13.21992 -12.99054 -12.79925 -12.60035 -12.33886 -12.25900
-12.10830 -11.85182 -11.69135 -11.54077 -11.33241 -11.09787 -10.97003 -10.80476
-10.71554 -10.10831 -10.03728 -9.85229 -9.34294 -9.21716 -8.50705 -8.48478
-8.32562 -7.73037 -6.15045 -4.18486 1.20710 1.37963 2.57104 2.66037
3.05286 3.23001 3.30249 3.33594 3.75740 4.23099 4.31904 4.37537
4.64263 4.70722 4.83173 4.85977 4.92946 5.04350 5.09685 5.20997
5.22387 5.31310 5.36377 5.42908 5.45168 5.46242 5.57800 5.58301
5.62682 5.75159 5.85063 5.91286 6.13323 6.15116 6.23897 6.39742
6.47182 6.57533 6.74411 6.83395 7.13516 7.32557 7.40194 7.43304
7.51944 7.77147 7.81658 8.12087 8.23546 8.87183 9.47020 10.95781
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015753 B = 0.003255 C = 0.003095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.996784 B = 8599.713555 C = 9044.472890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.082 4.082
3 C -0.130 4.130
4 C -0.111 4.111
5 C 0.083 3.917
6 C 0.096 3.904
7 C -0.130 4.130
8 O -0.311 6.311
9 C 0.076 3.924
10 H 0.077 0.923
11 C -0.145 4.145
12 C 0.067 3.933
13 N -0.558 5.558
14 C 0.530 3.470
15 O -0.511 6.511
16 C 0.077 3.923
17 H 0.099 0.901
18 N -0.829 5.829
19 C -0.139 4.139
20 C 0.026 3.974
21 C -0.525 4.525
22 H 0.055 0.945
23 C 0.060 3.940
24 N -0.893 5.893
25 Si 0.893 3.107
26 H -0.280 1.280
27 H -0.285 1.285
28 H -0.274 1.274
29 H 0.069 0.931
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.125 0.875
33 H 0.164 0.836
34 H 0.131 0.869
35 H 0.072 0.928
36 H 0.085 0.915
37 H 0.072 0.928
38 H 0.093 0.907
39 H 0.113 0.887
40 H 0.347 0.653
41 H 0.357 0.643
42 H 0.057 0.943
43 H 0.057 0.943
44 H 0.019 0.981
45 H 0.019 0.981
46 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.892 -7.015 -6.527 20.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.083 4.083
3 C -0.149 4.149
4 C -0.131 4.131
5 C -0.011 4.011
6 C 0.049 3.951
7 C -0.149 4.149
8 O -0.225 6.225
9 C 0.019 3.981
10 H 0.095 0.905
11 C -0.202 4.202
12 C -0.056 4.056
13 N -0.283 5.283
14 C 0.320 3.680
15 O -0.385 6.385
16 C -0.038 4.038
17 H 0.117 0.883
18 N -0.362 5.362
19 C -0.178 4.178
20 C -0.011 4.011
21 C -0.564 4.564
22 H 0.073 0.927
23 C -0.142 4.142
24 N -0.531 5.531
25 Si 0.720 3.280
26 H -0.206 1.206
27 H -0.211 1.211
28 H -0.199 1.199
29 H 0.088 0.912
30 H 0.085 0.915
31 H 0.083 0.917
32 H 0.143 0.857
33 H 0.181 0.819
34 H 0.149 0.851
35 H 0.091 0.909
36 H 0.104 0.896
37 H 0.091 0.909
38 H 0.111 0.889
39 H 0.131 0.869
40 H 0.160 0.840
41 H 0.173 0.827
42 H 0.076 0.924
43 H 0.075 0.925
44 H 0.037 0.963
45 H 0.037 0.963
46 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -18.313 -6.959 -7.339 20.921
hybrid contribution 1.055 0.373 1.947 2.245
sum -17.259 -6.586 -5.393 19.244
Atomic orbital electron populations
1.20734 0.90896 1.02646 1.02250 1.19650 0.95980 0.92294 1.00347
1.20928 0.93552 0.97498 1.02894 1.21776 0.94210 0.98421 0.98695
1.18051 0.82680 0.94028 1.06351 1.18501 0.91506 0.83037 1.02072
1.20182 0.90087 0.98534 1.06130 1.86020 1.25630 1.28572 1.82297
1.22811 0.80129 0.96771 0.98423 0.90458 1.21778 1.00745 0.93981
1.03699 1.22896 0.98301 0.82180 1.02182 1.45802 1.03820 1.11039
1.67636 1.21114 0.90487 0.81551 0.74801 1.90488 1.70585 1.32928
1.44543 1.21524 0.88725 0.97421 0.96153 0.88295 1.58748 1.13745
1.04997 1.58717 1.22421 1.01935 1.01711 0.91776 1.19091 0.87158
0.97349 0.97469 1.21153 0.92303 1.50193 0.92703 0.92701 1.25000
0.96609 0.95013 0.97578 1.69936 1.00689 1.49478 1.33022 0.86581
0.77896 0.78358 0.85135 1.20559 1.21102 1.19855 0.91222 0.91506
0.91660 0.85694 0.81871 0.85128 0.90924 0.89609 0.90907 0.88921
0.86864 0.83973 0.82699 0.92432 0.92457 0.96317 0.96308 0.92809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.87 10.00 36.01 0.36 -0.51 16
2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.55 16
3 C -0.13 -1.64 9.69 -39.56 -0.38 -2.02 16
4 C -0.11 -1.70 8.94 -39.45 -0.35 -2.05 16
5 C 0.08 1.28 6.33 -83.37 -0.53 0.76 16
6 C 0.10 1.35 6.51 -39.05 -0.25 1.10 16
7 C -0.13 -1.60 9.62 -39.42 -0.38 -1.98 16
8 O -0.31 -4.07 9.97 -19.43 -0.19 -4.27 16
9 C 0.08 0.83 3.58 -26.46 -0.09 0.74 16
10 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
11 C -0.14 -1.18 9.58 37.16 0.36 -0.83 16
12 C 0.07 0.83 5.08 -3.33 -0.02 0.81 16
13 N -0.56 -8.48 3.01 -112.34 -0.34 -8.82 16
14 C 0.53 8.98 6.85 -10.99 -0.08 8.90 16
15 O -0.51 -9.66 13.11 5.55 0.07 -9.59 16
16 C 0.08 1.27 2.47 -68.87 -0.17 1.10 16
17 H 0.10 1.51 6.32 -51.93 -0.33 1.18 16
18 N -0.83 -13.72 8.92 -5.65 -0.05 -13.77 16
19 C -0.14 -2.64 4.73 -26.74 -0.13 -2.76 16
20 C 0.03 0.62 4.74 -27.89 -0.13 0.48 16
21 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16
22 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16
23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
24 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16
25 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16
26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16
31 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16
32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16
33 H 0.16 2.75 5.16 -52.57 -0.27 2.48 16
34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16
35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.11 1.28 5.82 -51.93 -0.30 0.97 16
40 H 0.35 5.78 8.59 -39.29 -0.34 5.44 16
41 H 0.36 5.86 7.55 -39.29 -0.30 5.57 16
42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
43 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16
44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.02 0.46 6.87 -51.92 -0.36 0.10 16
46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
LS Contribution 369.02 15.07 5.56 5.56
Total: -1.00 -31.05 369.02 -8.95 -39.99
By element:
Atomic # 1 Polarization: 17.17 SS G_CDS: -6.89 Total: 10.28 kcal
Atomic # 6 Polarization: -7.81 SS G_CDS: -2.82 Total: -10.63 kcal
Atomic # 7 Polarization: -47.59 SS G_CDS: 0.35 Total: -47.24 kcal
Atomic # 8 Polarization: -13.73 SS G_CDS: -0.12 Total: -13.86 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -31.05 -8.95 -39.99 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000818123602.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.107 kcal
(2) G-P(sol) polarization free energy of solvation -31.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds