Wall clock time and date at job start Tue Mar 31 2020 12:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.85402 * 2 1 4 4 C 1.38248 * 120.06088 * 180.02562 * 3 2 1 5 5 C 1.38579 * 119.88021 * 0.02562 * 4 3 2 6 6 C 1.39208 * 120.17272 * 359.88851 * 5 4 3 7 7 C 1.38209 * 119.85153 * 180.02562 * 2 1 3 8 8 O 1.35900 * 120.79505 * 180.21274 * 6 5 4 9 9 C 1.42958 * 117.76743 * 339.65647 * 8 6 5 10 10 H 1.08998 * 109.58357 * 289.70278 * 9 8 6 11 11 C 1.52997 * 109.58172 * 169.29836 * 9 8 6 12 12 C 1.53535 * 108.80545 * 49.50117 * 9 8 6 13 13 N 1.40554 * 120.09055 * 179.64610 * 5 4 3 14 14 C 1.34778 * 121.16011 * 346.48291 * 13 5 4 15 15 O 1.21291 * 120.00263 * 354.20788 * 14 13 5 16 16 C 1.50698 * 119.99459 * 174.20827 * 14 13 5 17 17 H 1.09003 * 109.47667 * 41.51951 * 16 14 13 18 18 N 1.46902 * 109.46684 * 161.51862 * 16 14 13 19 19 C 1.52995 * 109.47385 * 281.51372 * 16 14 13 20 20 C 1.52996 * 109.47604 * 175.00236 * 19 16 14 21 21 C 1.50695 * 109.47571 * 179.97438 * 20 19 16 22 22 H 1.08002 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00053 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99769 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47256 * 90.00421 * 25 23 21 27 27 H 1.48502 * 109.46948 * 209.99793 * 25 23 21 28 28 H 1.48496 * 109.47559 * 330.00547 * 25 23 21 29 29 H 1.08990 * 109.47131 * 269.97490 * 1 2 3 30 30 H 1.09000 * 109.47007 * 29.97863 * 1 2 3 31 31 H 1.09004 * 109.46848 * 149.97169 * 1 2 3 32 32 H 1.07997 * 119.96652 * 0.04490 * 3 2 1 33 33 H 1.07999 * 120.06140 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.97610 * 0.02562 * 7 2 1 35 35 H 1.08995 * 109.47619 * 60.00223 * 11 9 8 36 36 H 1.08999 * 109.47115 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.47029 * 299.99656 * 11 9 8 38 38 H 1.09006 * 109.83962 * 61.32669 * 12 9 8 39 39 H 1.09005 * 109.83651 * 182.29217 * 12 9 8 40 40 H 1.00897 * 111.00071 * 59.99833 * 18 16 14 41 41 H 1.00899 * 110.99901 * 183.94996 * 18 16 14 42 42 H 1.08999 * 109.47426 * 295.00787 * 19 16 14 43 43 H 1.09003 * 109.46764 * 55.00237 * 19 16 14 44 44 H 1.08999 * 109.47178 * 300.00702 * 20 19 16 45 45 H 1.09010 * 109.46734 * 60.00027 * 20 19 16 46 46 H 0.96995 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1993 0.0000 4 6 3.5778 1.2043 -0.0005 5 6 4.2725 0.0052 -0.0016 6 6 3.5820 -1.2035 0.0002 7 6 2.1950 -1.1987 -0.0005 8 8 4.2505 -2.3867 0.0035 9 6 5.6112 -2.3841 -0.4347 10 1 5.6484 -2.2097 -1.5100 11 6 6.2576 -3.7319 -0.1084 12 6 6.3640 -1.2624 0.2949 13 7 5.6781 0.0051 -0.0097 14 6 6.3740 1.1258 -0.2860 15 8 5.7916 2.1306 -0.6358 16 6 7.8757 1.1304 -0.1602 17 1 8.2768 0.1995 -0.5611 18 7 8.4265 2.2653 -0.9128 19 6 8.2636 1.2597 1.3141 20 6 9.7824 1.1393 1.4544 21 6 10.1645 1.2674 2.9065 22 1 9.4005 1.4190 3.6546 23 6 11.4895 1.1899 3.2801 24 7 12.4198 1.0048 2.3692 25 14 11.9630 1.3479 5.0801 26 1 11.9640 0.0038 5.7116 27 1 13.3188 1.9448 5.1847 28 1 10.9829 2.2205 5.7752 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6525 2.1329 0.0007 33 1 4.1155 2.1410 -0.0010 34 1 1.6521 -2.1324 -0.0014 35 1 5.7146 -4.5281 -0.6176 36 1 7.2950 -3.7278 -0.4428 37 1 6.2239 -3.8999 0.9681 38 1 6.3465 -1.4433 1.3697 39 1 7.3948 -1.2189 -0.0570 40 1 8.0696 3.1406 -0.5599 41 1 9.4354 2.2538 -0.8975 42 1 7.9396 2.2297 1.6914 43 1 7.7819 0.4676 1.8874 44 1 10.1064 0.1694 1.0771 45 1 10.2641 1.9315 0.8811 46 1 13.3518 0.9499 2.6320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818123602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:51 Heat of formation + Delta-G solvation = -49.100460 kcal Electronic energy + Delta-G solvation = -27217.097099 eV Core-core repulsion = 23492.622313 eV Total energy + Delta-G solvation = -3724.474787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47168 -39.33696 -38.08301 -35.78802 -35.48251 -33.24057 -32.91386 -31.48703 -30.01525 -29.75899 -27.60743 -26.91237 -25.80016 -23.89171 -23.06851 -22.57860 -21.06854 -20.23829 -19.24883 -18.04138 -17.70697 -16.93947 -16.34530 -16.08708 -15.64467 -15.17311 -14.86156 -14.64850 -14.53366 -14.09909 -13.99829 -13.76342 -13.67249 -13.53312 -13.21992 -12.99054 -12.79925 -12.60035 -12.33886 -12.25900 -12.10830 -11.85182 -11.69135 -11.54077 -11.33241 -11.09787 -10.97003 -10.80476 -10.71554 -10.10831 -10.03728 -9.85229 -9.34294 -9.21716 -8.50705 -8.48478 -8.32562 -7.73037 -6.15045 -4.18486 1.20710 1.37963 2.57104 2.66037 3.05286 3.23001 3.30249 3.33594 3.75740 4.23099 4.31904 4.37537 4.64263 4.70722 4.83173 4.85977 4.92946 5.04350 5.09685 5.20997 5.22387 5.31310 5.36377 5.42908 5.45168 5.46242 5.57800 5.58301 5.62682 5.75159 5.85063 5.91286 6.13323 6.15116 6.23897 6.39742 6.47182 6.57533 6.74411 6.83395 7.13516 7.32557 7.40194 7.43304 7.51944 7.77147 7.81658 8.12087 8.23546 8.87183 9.47020 10.95781 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003255 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.996784 B = 8599.713555 C = 9044.472890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.111 4.111 5 C 0.083 3.917 6 C 0.096 3.904 7 C -0.130 4.130 8 O -0.311 6.311 9 C 0.076 3.924 10 H 0.077 0.923 11 C -0.145 4.145 12 C 0.067 3.933 13 N -0.558 5.558 14 C 0.530 3.470 15 O -0.511 6.511 16 C 0.077 3.923 17 H 0.099 0.901 18 N -0.829 5.829 19 C -0.139 4.139 20 C 0.026 3.974 21 C -0.525 4.525 22 H 0.055 0.945 23 C 0.060 3.940 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.164 0.836 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.347 0.653 41 H 0.357 0.643 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 -7.015 -6.527 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.011 4.011 6 C 0.049 3.951 7 C -0.149 4.149 8 O -0.225 6.225 9 C 0.019 3.981 10 H 0.095 0.905 11 C -0.202 4.202 12 C -0.056 4.056 13 N -0.283 5.283 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.038 4.038 17 H 0.117 0.883 18 N -0.362 5.362 19 C -0.178 4.178 20 C -0.011 4.011 21 C -0.564 4.564 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.181 0.819 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.313 -6.959 -7.339 20.921 hybrid contribution 1.055 0.373 1.947 2.245 sum -17.259 -6.586 -5.393 19.244 Atomic orbital electron populations 1.20734 0.90896 1.02646 1.02250 1.19650 0.95980 0.92294 1.00347 1.20928 0.93552 0.97498 1.02894 1.21776 0.94210 0.98421 0.98695 1.18051 0.82680 0.94028 1.06351 1.18501 0.91506 0.83037 1.02072 1.20182 0.90087 0.98534 1.06130 1.86020 1.25630 1.28572 1.82297 1.22811 0.80129 0.96771 0.98423 0.90458 1.21778 1.00745 0.93981 1.03699 1.22896 0.98301 0.82180 1.02182 1.45802 1.03820 1.11039 1.67636 1.21114 0.90487 0.81551 0.74801 1.90488 1.70585 1.32928 1.44543 1.21524 0.88725 0.97421 0.96153 0.88295 1.58748 1.13745 1.04997 1.58717 1.22421 1.01935 1.01711 0.91776 1.19091 0.87158 0.97349 0.97469 1.21153 0.92303 1.50193 0.92703 0.92701 1.25000 0.96609 0.95013 0.97578 1.69936 1.00689 1.49478 1.33022 0.86581 0.77896 0.78358 0.85135 1.20559 1.21102 1.19855 0.91222 0.91506 0.91660 0.85694 0.81871 0.85128 0.90924 0.89609 0.90907 0.88921 0.86864 0.83973 0.82699 0.92432 0.92457 0.96317 0.96308 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.00 36.01 0.36 -0.51 16 2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.64 9.69 -39.56 -0.38 -2.02 16 4 C -0.11 -1.70 8.94 -39.45 -0.35 -2.05 16 5 C 0.08 1.28 6.33 -83.37 -0.53 0.76 16 6 C 0.10 1.35 6.51 -39.05 -0.25 1.10 16 7 C -0.13 -1.60 9.62 -39.42 -0.38 -1.98 16 8 O -0.31 -4.07 9.97 -19.43 -0.19 -4.27 16 9 C 0.08 0.83 3.58 -26.46 -0.09 0.74 16 10 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.14 -1.18 9.58 37.16 0.36 -0.83 16 12 C 0.07 0.83 5.08 -3.33 -0.02 0.81 16 13 N -0.56 -8.48 3.01 -112.34 -0.34 -8.82 16 14 C 0.53 8.98 6.85 -10.99 -0.08 8.90 16 15 O -0.51 -9.66 13.11 5.55 0.07 -9.59 16 16 C 0.08 1.27 2.47 -68.87 -0.17 1.10 16 17 H 0.10 1.51 6.32 -51.93 -0.33 1.18 16 18 N -0.83 -13.72 8.92 -5.65 -0.05 -13.77 16 19 C -0.14 -2.64 4.73 -26.74 -0.13 -2.76 16 20 C 0.03 0.62 4.74 -27.89 -0.13 0.48 16 21 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 22 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 25 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.16 2.75 5.16 -52.57 -0.27 2.48 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.11 1.28 5.82 -51.93 -0.30 0.97 16 40 H 0.35 5.78 8.59 -39.29 -0.34 5.44 16 41 H 0.36 5.86 7.55 -39.29 -0.30 5.57 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 6.87 -51.92 -0.36 0.10 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -31.05 369.02 -8.95 -39.99 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.89 Total: 10.28 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.82 Total: -10.63 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.35 Total: -47.24 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.12 Total: -13.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.05 -8.95 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.107 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds