Wall clock time and date at job start Tue Mar 31 2020 12:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.85402 * 2 1 4 4 C 1.38248 * 120.06088 * 180.02562 * 3 2 1 5 5 C 1.38579 * 119.88021 * 0.02562 * 4 3 2 6 6 C 1.39208 * 120.17272 * 359.88851 * 5 4 3 7 7 C 1.38209 * 119.85153 * 180.02562 * 2 1 3 8 8 O 1.35900 * 120.79505 * 180.21274 * 6 5 4 9 9 C 1.42958 * 117.76743 * 339.65647 * 8 6 5 10 10 H 1.08998 * 109.58357 * 289.70278 * 9 8 6 11 11 C 1.52997 * 109.58172 * 169.29836 * 9 8 6 12 12 C 1.53535 * 108.80545 * 49.50117 * 9 8 6 13 13 N 1.40554 * 120.09055 * 179.64610 * 5 4 3 14 14 C 1.34778 * 121.16011 * 346.48291 * 13 5 4 15 15 O 1.21291 * 120.00263 * 354.20788 * 14 13 5 16 16 C 1.50698 * 119.99459 * 174.20827 * 14 13 5 17 17 H 1.09003 * 109.47667 * 41.51951 * 16 14 13 18 18 N 1.46902 * 109.46684 * 161.51862 * 16 14 13 19 19 C 1.52995 * 109.47385 * 281.51372 * 16 14 13 20 20 C 1.52996 * 109.47604 * 175.00236 * 19 16 14 21 21 C 1.50695 * 109.47571 * 179.97438 * 20 19 16 22 22 H 1.08002 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00053 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99769 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47256 * 90.00421 * 25 23 21 27 27 H 1.48502 * 109.46948 * 209.99793 * 25 23 21 28 28 H 1.48496 * 109.47559 * 330.00547 * 25 23 21 29 29 H 1.08990 * 109.47131 * 269.97490 * 1 2 3 30 30 H 1.09000 * 109.47007 * 29.97863 * 1 2 3 31 31 H 1.09004 * 109.46848 * 149.97169 * 1 2 3 32 32 H 1.07997 * 119.96652 * 0.04490 * 3 2 1 33 33 H 1.07999 * 120.06140 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.97610 * 0.02562 * 7 2 1 35 35 H 1.08995 * 109.47619 * 60.00223 * 11 9 8 36 36 H 1.08999 * 109.47115 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.47029 * 299.99656 * 11 9 8 38 38 H 1.09006 * 109.83962 * 61.32669 * 12 9 8 39 39 H 1.09005 * 109.83651 * 182.29217 * 12 9 8 40 40 H 1.00897 * 111.00071 * 59.99833 * 18 16 14 41 41 H 1.00899 * 110.99901 * 183.94996 * 18 16 14 42 42 H 1.08999 * 109.47426 * 295.00787 * 19 16 14 43 43 H 1.09003 * 109.46764 * 55.00237 * 19 16 14 44 44 H 1.08999 * 109.47178 * 300.00702 * 20 19 16 45 45 H 1.09010 * 109.46734 * 60.00027 * 20 19 16 46 46 H 0.96995 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1993 0.0000 4 6 3.5778 1.2043 -0.0005 5 6 4.2725 0.0052 -0.0016 6 6 3.5820 -1.2035 0.0002 7 6 2.1950 -1.1987 -0.0005 8 8 4.2505 -2.3867 0.0035 9 6 5.6112 -2.3841 -0.4347 10 1 5.6484 -2.2097 -1.5100 11 6 6.2576 -3.7319 -0.1084 12 6 6.3640 -1.2624 0.2949 13 7 5.6781 0.0051 -0.0097 14 6 6.3740 1.1258 -0.2860 15 8 5.7916 2.1306 -0.6358 16 6 7.8757 1.1304 -0.1602 17 1 8.2768 0.1995 -0.5611 18 7 8.4265 2.2653 -0.9128 19 6 8.2636 1.2597 1.3141 20 6 9.7824 1.1393 1.4544 21 6 10.1645 1.2674 2.9065 22 1 9.4005 1.4190 3.6546 23 6 11.4895 1.1899 3.2801 24 7 12.4198 1.0048 2.3692 25 14 11.9630 1.3479 5.0801 26 1 11.9640 0.0038 5.7116 27 1 13.3188 1.9448 5.1847 28 1 10.9829 2.2205 5.7752 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6525 2.1329 0.0007 33 1 4.1155 2.1410 -0.0010 34 1 1.6521 -2.1324 -0.0014 35 1 5.7146 -4.5281 -0.6176 36 1 7.2950 -3.7278 -0.4428 37 1 6.2239 -3.8999 0.9681 38 1 6.3465 -1.4433 1.3697 39 1 7.3948 -1.2189 -0.0570 40 1 8.0696 3.1406 -0.5599 41 1 9.4354 2.2538 -0.8975 42 1 7.9396 2.2297 1.6914 43 1 7.7819 0.4676 1.8874 44 1 10.1064 0.1694 1.0771 45 1 10.2641 1.9315 0.8811 46 1 13.3518 0.9499 2.6320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818123602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:51 Heat of formation + Delta-G solvation = -68.226519 kcal Electronic energy + Delta-G solvation = -27217.926467 eV Core-core repulsion = 23492.622313 eV Total energy + Delta-G solvation = -3725.304155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57166 -40.53941 -39.03896 -37.29207 -36.66089 -34.92185 -34.04795 -32.44667 -31.75831 -30.71835 -28.85427 -27.87357 -27.19777 -25.44342 -23.99388 -23.62268 -22.61012 -21.44638 -20.43722 -19.10312 -18.97053 -18.42165 -17.83001 -17.14960 -16.93673 -16.45624 -16.24933 -16.07263 -15.83910 -15.20007 -15.16068 -14.98391 -14.85140 -14.62318 -14.31057 -14.25290 -13.96324 -13.75710 -13.47823 -13.31797 -13.06361 -12.98908 -12.89956 -12.71987 -12.62911 -12.55221 -12.37635 -12.27358 -11.87821 -11.71481 -11.65581 -11.33216 -11.09832 -10.58145 -10.55707 -9.74921 -9.50607 -8.79548 -8.23427 -6.33423 0.15561 0.35085 1.37674 1.38594 1.40384 1.44042 1.49859 2.12528 2.38296 2.73305 3.10340 3.14271 3.31692 3.59727 3.66901 3.79809 3.85582 3.95101 4.03746 4.08159 4.17894 4.26695 4.28535 4.41478 4.50735 4.55917 4.60201 4.73475 4.79730 4.88378 4.89988 4.99173 5.00204 5.10308 5.12759 5.23014 5.28369 5.43254 5.48182 5.60558 5.61541 5.77158 5.81989 5.92040 6.09635 6.18888 6.33306 6.40149 6.80939 6.84488 7.35797 8.87139 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003255 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.996784 B = 8599.713555 C = 9044.472890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.053 3.947 6 C 0.087 3.913 7 C -0.134 4.134 8 O -0.315 6.315 9 C 0.076 3.924 10 H 0.078 0.922 11 C -0.139 4.139 12 C 0.060 3.940 13 N -0.556 5.556 14 C 0.527 3.473 15 O -0.537 6.537 16 C 0.086 3.914 17 H 0.116 0.884 18 N -0.828 5.828 19 C -0.120 4.120 20 C 0.034 3.966 21 C -0.546 4.546 22 H 0.052 0.948 23 C 0.010 3.990 24 N -0.924 5.924 25 Si 0.955 3.045 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.346 0.654 41 H 0.357 0.643 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.005 0.995 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.473 -8.398 -6.123 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.152 4.152 5 C -0.041 4.041 6 C 0.040 3.960 7 C -0.152 4.152 8 O -0.230 6.230 9 C 0.020 3.980 10 H 0.096 0.904 11 C -0.196 4.196 12 C -0.061 4.061 13 N -0.281 5.281 14 C 0.317 3.683 15 O -0.414 6.414 16 C -0.029 4.029 17 H 0.133 0.867 18 N -0.360 5.360 19 C -0.160 4.160 20 C -0.003 4.003 21 C -0.584 4.584 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.563 5.563 25 Si 0.781 3.219 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.195 1.195 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.023 0.977 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.912 -8.371 -6.932 22.685 hybrid contribution 1.463 0.788 1.804 2.453 sum -18.450 -7.583 -5.128 20.596 Atomic orbital electron populations 1.20819 0.88001 1.04049 1.03459 1.20075 0.97963 0.91381 0.97991 1.21190 0.92634 0.99112 1.02389 1.21723 0.95511 0.97678 1.00313 1.18276 0.82723 0.94807 1.08295 1.18749 0.92334 0.82810 1.02078 1.20571 0.89528 0.99884 1.05252 1.86017 1.26506 1.28106 1.82379 1.22993 0.79227 0.97619 0.98206 0.90372 1.21814 1.01507 0.92459 1.03859 1.23118 0.98929 0.81633 1.02439 1.45806 1.04151 1.11296 1.66815 1.21063 0.90424 0.81831 0.74965 1.90485 1.70960 1.33990 1.45982 1.21414 0.88980 0.98118 0.94364 0.86690 1.58756 1.13714 1.05022 1.58502 1.22144 0.98978 1.01123 0.93785 1.18937 0.89715 0.96064 0.95594 1.21571 0.92554 1.49952 0.94303 0.93019 1.25794 0.96674 0.94729 1.01729 1.70037 1.01008 1.50367 1.34927 0.85591 0.77519 0.78628 0.80196 1.19638 1.20754 1.19488 0.89925 0.90343 0.90109 0.83805 0.84062 0.82884 0.89793 0.88006 0.90973 0.89075 0.85877 0.84119 0.82688 0.93704 0.91990 0.97406 0.97664 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.00 71.24 0.71 -0.64 16 2 C -0.07 -1.52 5.88 -19.86 -0.12 -1.64 16 3 C -0.13 -3.29 9.69 22.28 0.22 -3.08 16 4 C -0.13 -4.14 8.94 22.35 0.20 -3.94 16 5 C 0.05 1.64 6.33 38.06 0.24 1.88 16 6 C 0.09 2.39 6.51 22.61 0.15 2.54 16 7 C -0.13 -3.02 9.62 22.37 0.22 -2.81 16 8 O -0.32 -7.89 9.97 -92.43 -0.92 -8.81 16 9 C 0.08 1.59 3.58 30.77 0.11 1.70 16 10 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 11 C -0.14 -2.01 9.58 71.98 0.69 -1.32 16 12 C 0.06 1.47 5.08 86.41 0.44 1.91 16 13 N -0.56 -17.10 3.01 -627.71 -1.89 -18.99 16 14 C 0.53 18.22 6.85 87.66 0.60 18.82 16 15 O -0.54 -21.07 13.11 -3.06 -0.04 -21.11 16 16 C 0.09 2.88 2.47 44.17 0.11 2.98 16 17 H 0.12 3.45 6.32 -2.39 -0.02 3.43 16 18 N -0.83 -27.82 8.92 -171.80 -1.53 -29.35 16 19 C -0.12 -4.64 4.73 30.59 0.14 -4.50 16 20 C 0.03 1.61 4.74 29.85 0.14 1.75 16 21 C -0.55 -29.39 9.11 25.60 0.23 -29.15 16 22 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 23 C 0.01 0.53 5.46 84.66 0.46 0.99 16 24 N -0.92 -52.83 13.29 21.45 0.28 -52.54 16 25 Si 0.96 42.74 29.54 68.60 2.03 44.76 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 32 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.14 5.03 5.16 -4.25 -0.02 5.01 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.12 2.68 5.82 -2.38 -0.01 2.67 16 40 H 0.35 11.83 8.59 -89.70 -0.77 11.06 16 41 H 0.36 11.94 7.55 -89.69 -0.68 11.26 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 2.31 7.51 -2.39 -0.02 2.29 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 45 H 0.01 0.25 6.87 -2.38 -0.02 0.24 16 46 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -66.93 369.02 2.02 -64.91 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.45 Total: 35.61 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 4.54 Total: -14.48 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.14 Total: -100.88 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.96 Total: -29.92 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -66.93 2.02 -64.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.316 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds