Wall clock time and date at job start Tue Mar 31 2020 12:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38283 * 119.85073 * 2 1 4 4 C 1.38257 * 120.05946 * 179.90780 * 3 2 1 5 5 C 1.38576 * 119.87599 * 0.02562 * 4 3 2 6 6 C 1.39207 * 120.18008 * 0.11890 * 5 4 3 7 7 C 1.38203 * 119.85430 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.80190 * 179.76903 * 6 5 4 9 9 C 1.42953 * 117.77943 * 20.23879 * 8 6 5 10 10 H 1.08997 * 109.57667 * 70.51190 * 9 8 6 11 11 C 1.53002 * 109.57961 * 190.77058 * 9 8 6 12 12 C 1.53529 * 108.82270 * 310.57506 * 9 8 6 13 13 N 1.40556 * 120.08767 * 180.30323 * 5 4 3 14 14 C 1.34778 * 121.16007 * 13.61867 * 13 5 4 15 15 O 1.21288 * 120.00368 * 355.69146 * 14 13 5 16 16 C 1.50698 * 119.99615 * 175.68974 * 14 13 5 17 17 H 1.09002 * 109.47162 * 324.88452 * 16 14 13 18 18 N 1.46900 * 109.47176 * 204.88747 * 16 14 13 19 19 C 1.53001 * 109.47332 * 84.89010 * 16 14 13 20 20 C 1.53004 * 109.47346 * 185.00071 * 19 16 14 21 21 C 1.50693 * 109.47043 * 180.02562 * 20 19 16 22 22 H 1.07999 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99912 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00249 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99942 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47248 * 90.00217 * 25 23 21 27 27 H 1.48500 * 109.47089 * 210.00066 * 25 23 21 28 28 H 1.48504 * 109.46999 * 330.00082 * 25 23 21 29 29 H 1.08998 * 109.47329 * 89.99936 * 1 2 3 30 30 H 1.08999 * 109.47209 * 210.00190 * 1 2 3 31 31 H 1.09004 * 109.47189 * 330.00187 * 1 2 3 32 32 H 1.07993 * 119.97272 * 359.93386 * 3 2 1 33 33 H 1.08001 * 120.06519 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.97070 * 0.02767 * 7 2 1 35 35 H 1.09001 * 109.46951 * 60.00393 * 11 9 8 36 36 H 1.08998 * 109.47207 * 300.00556 * 11 9 8 37 37 H 1.08997 * 109.47386 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.83732 * 177.70113 * 12 9 8 39 39 H 1.08996 * 109.84025 * 298.66748 * 12 9 8 40 40 H 1.00904 * 111.00215 * 300.00378 * 18 16 14 41 41 H 1.00901 * 110.99969 * 63.95193 * 18 16 14 42 42 H 1.09003 * 109.46807 * 304.99430 * 19 16 14 43 43 H 1.08997 * 109.47167 * 64.99859 * 19 16 14 44 44 H 1.08996 * 109.46532 * 299.99834 * 20 19 16 45 45 H 1.08999 * 109.47158 * 59.99244 * 20 19 16 46 46 H 0.96996 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5778 1.2044 0.0019 5 6 4.2725 0.0053 0.0033 6 6 3.5820 -1.2034 0.0003 7 6 2.1949 -1.1986 0.0005 8 8 4.2505 -2.3867 -0.0031 9 6 5.6115 -2.3842 0.4340 10 1 5.6493 -2.2133 1.5098 11 6 6.2578 -3.7317 0.1060 12 6 6.3639 -1.2618 -0.2948 13 7 5.6780 0.0052 0.0117 14 6 6.3738 1.1255 0.2900 15 8 5.7904 2.1748 0.4621 16 6 7.8768 1.0742 0.3874 17 1 8.1805 0.1208 0.8197 18 7 8.3498 2.1718 1.2415 19 6 8.4836 1.2173 -1.0097 20 6 10.0012 1.0407 -0.9272 21 6 10.5989 1.1823 -2.3033 22 1 9.9603 1.3781 -3.1519 23 6 11.9611 1.0607 -2.4790 24 7 12.4827 1.1837 -3.6800 25 14 13.0656 0.7212 -1.0113 26 1 13.2089 -0.7455 -0.8284 27 1 14.4022 1.3234 -1.2479 28 1 12.4637 1.3159 0.2091 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6524 2.1329 -0.0011 33 1 4.1155 2.1411 0.0015 34 1 1.6521 -2.1323 0.0005 35 1 6.2233 -3.8988 -0.9705 36 1 5.7151 -4.5284 0.6149 37 1 7.2952 -3.7282 0.4404 38 1 7.3948 -1.2187 0.0565 39 1 6.3458 -1.4416 -1.3697 40 1 8.0805 3.0672 0.8619 41 1 8.0147 2.0645 2.1871 42 1 8.0646 0.4558 -1.6676 43 1 8.2540 2.2063 -1.4061 44 1 10.4202 1.8021 -0.2694 45 1 10.2309 0.0517 -0.5308 46 1 13.4410 1.0986 -3.8036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818123603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:54 Heat of formation + Delta-G solvation = -43.024645 kcal Electronic energy + Delta-G solvation = -27247.913046 eV Core-core repulsion = 23523.701727 eV Total energy + Delta-G solvation = -3724.211320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60425 -39.53945 -38.16729 -35.73831 -35.60891 -33.29524 -32.84429 -31.55707 -30.61655 -29.84344 -27.71580 -27.01245 -26.04689 -23.69280 -23.12027 -22.63766 -20.87957 -20.16501 -19.45710 -18.14680 -17.71401 -17.01135 -16.68243 -16.21432 -15.87088 -15.37051 -15.18471 -14.95376 -14.48888 -14.15486 -14.12270 -13.76607 -13.76173 -13.56351 -13.31100 -12.93068 -12.76404 -12.65072 -12.44180 -12.39635 -12.19425 -11.85691 -11.77753 -11.65577 -11.44883 -11.09413 -10.92570 -10.89287 -10.25852 -10.10538 -9.97484 -9.78810 -9.60322 -9.17412 -8.62731 -8.55759 -8.49025 -7.84242 -6.04041 -4.02413 1.10591 1.29991 2.44358 2.49030 2.96741 3.31109 3.39940 3.46707 3.66386 4.12151 4.23380 4.46491 4.54699 4.59792 4.66697 4.75034 4.79971 4.89247 4.99216 5.13018 5.23080 5.24551 5.31084 5.33634 5.35921 5.40235 5.46171 5.51595 5.54718 5.69027 5.78328 5.83707 6.03982 6.14417 6.18282 6.36143 6.38153 6.49088 6.74372 6.77025 7.01393 7.16332 7.25496 7.27076 7.48975 7.51939 7.80094 7.91325 8.52530 9.00362 9.58312 11.09368 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003321 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.048527 B = 8429.175701 C = 9144.191897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.117 4.117 5 C 0.075 3.925 6 C 0.097 3.903 7 C -0.131 4.131 8 O -0.310 6.310 9 C 0.076 3.924 10 H 0.077 0.923 11 C -0.146 4.146 12 C 0.064 3.936 13 N -0.553 5.553 14 C 0.489 3.511 15 O -0.525 6.525 16 C 0.077 3.923 17 H 0.100 0.900 18 N -0.808 5.808 19 C -0.089 4.089 20 C -0.002 4.002 21 C -0.523 4.523 22 H 0.069 0.931 23 C 0.067 3.933 24 N -0.905 5.905 25 Si 0.879 3.121 26 H -0.279 1.279 27 H -0.289 1.289 28 H -0.260 1.260 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.172 0.828 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.352 0.648 41 H 0.336 0.664 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.008 0.992 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 -7.506 11.114 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.136 4.136 5 C -0.019 4.019 6 C 0.051 3.949 7 C -0.151 4.151 8 O -0.225 6.225 9 C 0.019 3.981 10 H 0.095 0.905 11 C -0.203 4.203 12 C -0.058 4.058 13 N -0.278 5.278 14 C 0.278 3.722 15 O -0.401 6.401 16 C -0.038 4.038 17 H 0.118 0.882 18 N -0.336 5.336 19 C -0.127 4.127 20 C -0.040 4.040 21 C -0.561 4.561 22 H 0.087 0.913 23 C -0.134 4.134 24 N -0.544 5.544 25 Si 0.706 3.294 26 H -0.205 1.205 27 H -0.216 1.216 28 H -0.184 1.184 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.189 0.811 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.148 0.852 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.026 0.974 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.591 -7.360 10.898 23.596 hybrid contribution -0.193 0.041 0.710 0.737 sum -19.784 -7.318 11.609 24.077 Atomic orbital electron populations 1.20745 0.90848 1.02676 1.02338 1.19678 0.96033 0.92308 1.00022 1.20972 0.93660 0.97492 1.02926 1.22082 0.94284 0.98839 0.98429 1.18142 0.82812 0.94055 1.06886 1.18531 0.91538 0.83048 1.01828 1.20198 0.90107 0.98578 1.06168 1.86027 1.25581 1.28554 1.82302 1.22813 0.80133 0.96858 0.98317 0.90546 1.21791 1.00763 0.93933 1.03810 1.22950 0.98410 0.82040 1.02410 1.45960 1.03899 1.11261 1.66657 1.22940 0.92597 0.82167 0.74475 1.90434 1.70540 1.29697 1.49477 1.21964 0.85249 0.97482 0.99129 0.88234 1.59047 1.64438 1.05243 1.04889 1.21525 0.99402 1.02043 0.89777 1.19476 0.89858 0.96686 0.97955 1.21147 0.92818 1.49139 0.93008 0.91282 1.25011 0.98137 0.94672 0.95606 1.69916 1.12208 1.50678 1.21570 0.86784 0.79949 0.78588 0.84083 1.20474 1.21552 1.18415 0.91139 0.91616 0.91482 0.85692 0.81132 0.85082 0.90814 0.90888 0.89555 0.86617 0.88684 0.83284 0.85178 0.92181 0.91833 0.94677 0.97378 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.00 36.00 0.36 -0.47 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.48 16 3 C -0.13 -1.59 9.69 -39.56 -0.38 -1.97 16 4 C -0.12 -1.70 9.03 -39.45 -0.36 -2.05 16 5 C 0.08 1.10 6.34 -83.37 -0.53 0.57 16 6 C 0.10 1.31 6.52 -39.05 -0.25 1.06 16 7 C -0.13 -1.54 9.62 -39.42 -0.38 -1.92 16 8 O -0.31 -3.87 9.97 -19.42 -0.19 -4.06 16 9 C 0.08 0.77 3.58 -26.46 -0.09 0.68 16 10 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.15 -1.11 9.58 37.16 0.36 -0.75 16 12 C 0.06 0.74 5.28 -3.33 -0.02 0.72 16 13 N -0.55 -7.80 3.01 -112.35 -0.34 -8.14 16 14 C 0.49 7.49 6.85 -10.99 -0.08 7.42 16 15 O -0.52 -8.96 13.00 5.55 0.07 -8.89 16 16 C 0.08 1.17 2.35 -68.86 -0.16 1.01 16 17 H 0.10 1.33 6.33 -51.93 -0.33 1.00 16 18 N -0.81 -11.95 8.49 -5.65 -0.05 -12.00 16 19 C -0.09 -1.67 4.75 -26.73 -0.13 -1.79 16 20 C 0.00 -0.05 3.93 -27.88 -0.11 -0.16 16 21 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 22 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 23 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 24 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 25 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.17 2.74 4.91 -53.56 -0.26 2.48 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 1.19 5.69 -51.93 -0.30 0.89 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.35 5.32 8.56 -39.29 -0.34 4.99 16 41 H 0.34 4.22 9.06 -39.29 -0.36 3.86 16 42 H 0.06 1.09 7.64 -51.93 -0.40 0.69 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.03 0.83 6.81 -51.93 -0.35 0.47 16 45 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -32.95 367.31 -8.64 -41.59 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.95 Total: 8.43 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.82 Total: -12.23 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.39 Total: -47.09 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.12 Total: -12.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.95 -8.64 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.434 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds