Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38283 * 119.85073 * 2 1 4 4 C 1.38257 * 120.05946 * 179.90780 * 3 2 1 5 5 C 1.38576 * 119.87599 * 0.02562 * 4 3 2 6 6 C 1.39207 * 120.18008 * 0.11890 * 5 4 3 7 7 C 1.38203 * 119.85430 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.80190 * 179.76903 * 6 5 4 9 9 C 1.42953 * 117.77943 * 20.23879 * 8 6 5 10 10 H 1.08997 * 109.57667 * 70.51190 * 9 8 6 11 11 C 1.53002 * 109.57961 * 190.77058 * 9 8 6 12 12 C 1.53529 * 108.82270 * 310.57506 * 9 8 6 13 13 N 1.40556 * 120.08767 * 180.30323 * 5 4 3 14 14 C 1.34778 * 121.16007 * 13.61867 * 13 5 4 15 15 O 1.21288 * 120.00368 * 355.69146 * 14 13 5 16 16 C 1.50698 * 119.99615 * 175.68974 * 14 13 5 17 17 H 1.09002 * 109.47162 * 324.88452 * 16 14 13 18 18 N 1.46900 * 109.47176 * 204.88747 * 16 14 13 19 19 C 1.53001 * 109.47332 * 84.89010 * 16 14 13 20 20 C 1.53004 * 109.47346 * 185.00071 * 19 16 14 21 21 C 1.50693 * 109.47043 * 180.02562 * 20 19 16 22 22 H 1.07999 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99912 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00249 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99942 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47248 * 90.00217 * 25 23 21 27 27 H 1.48500 * 109.47089 * 210.00066 * 25 23 21 28 28 H 1.48504 * 109.46999 * 330.00082 * 25 23 21 29 29 H 1.08998 * 109.47329 * 89.99936 * 1 2 3 30 30 H 1.08999 * 109.47209 * 210.00190 * 1 2 3 31 31 H 1.09004 * 109.47189 * 330.00187 * 1 2 3 32 32 H 1.07993 * 119.97272 * 359.93386 * 3 2 1 33 33 H 1.08001 * 120.06519 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.97070 * 0.02767 * 7 2 1 35 35 H 1.09001 * 109.46951 * 60.00393 * 11 9 8 36 36 H 1.08998 * 109.47207 * 300.00556 * 11 9 8 37 37 H 1.08997 * 109.47386 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.83732 * 177.70113 * 12 9 8 39 39 H 1.08996 * 109.84025 * 298.66748 * 12 9 8 40 40 H 1.00904 * 111.00215 * 300.00378 * 18 16 14 41 41 H 1.00901 * 110.99969 * 63.95193 * 18 16 14 42 42 H 1.09003 * 109.46807 * 304.99430 * 19 16 14 43 43 H 1.08997 * 109.47167 * 64.99859 * 19 16 14 44 44 H 1.08996 * 109.46532 * 299.99834 * 20 19 16 45 45 H 1.08999 * 109.47158 * 59.99244 * 20 19 16 46 46 H 0.96996 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1994 0.0000 4 6 3.5778 1.2044 0.0019 5 6 4.2725 0.0053 0.0033 6 6 3.5820 -1.2034 0.0003 7 6 2.1949 -1.1986 0.0005 8 8 4.2505 -2.3867 -0.0031 9 6 5.6115 -2.3842 0.4340 10 1 5.6493 -2.2133 1.5098 11 6 6.2578 -3.7317 0.1060 12 6 6.3639 -1.2618 -0.2948 13 7 5.6780 0.0052 0.0117 14 6 6.3738 1.1255 0.2900 15 8 5.7904 2.1748 0.4621 16 6 7.8768 1.0742 0.3874 17 1 8.1805 0.1208 0.8197 18 7 8.3498 2.1718 1.2415 19 6 8.4836 1.2173 -1.0097 20 6 10.0012 1.0407 -0.9272 21 6 10.5989 1.1823 -2.3033 22 1 9.9603 1.3781 -3.1519 23 6 11.9611 1.0607 -2.4790 24 7 12.4827 1.1837 -3.6800 25 14 13.0656 0.7212 -1.0113 26 1 13.2089 -0.7455 -0.8284 27 1 14.4022 1.3234 -1.2479 28 1 12.4637 1.3159 0.2091 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6524 2.1329 -0.0011 33 1 4.1155 2.1411 0.0015 34 1 1.6521 -2.1323 0.0005 35 1 6.2233 -3.8988 -0.9705 36 1 5.7151 -4.5284 0.6149 37 1 7.2952 -3.7282 0.4404 38 1 7.3948 -1.2187 0.0565 39 1 6.3458 -1.4416 -1.3697 40 1 8.0805 3.0672 0.8619 41 1 8.0147 2.0645 2.1871 42 1 8.0646 0.4558 -1.6676 43 1 8.2540 2.2063 -1.4061 44 1 10.4202 1.8021 -0.2694 45 1 10.2309 0.0517 -0.5308 46 1 13.4410 1.0986 -3.8036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818123603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = -65.064960 kcal Electronic energy + Delta-G solvation = -27248.868786 eV Core-core repulsion = 23523.701727 eV Total energy + Delta-G solvation = -3725.167059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.62277 -40.62989 -39.06216 -37.08917 -36.72817 -34.87031 -34.05593 -32.47579 -32.34010 -30.73866 -28.95726 -27.89637 -27.33826 -25.10674 -23.99683 -23.63029 -22.34516 -21.44201 -20.54203 -19.12724 -18.89871 -18.74970 -17.84492 -17.18937 -17.11711 -16.58706 -16.26557 -16.08470 -15.97142 -15.46822 -15.08983 -14.92162 -14.74869 -14.64954 -14.48586 -14.29071 -13.97184 -13.70878 -13.51899 -13.32774 -13.08529 -12.94358 -12.82102 -12.70283 -12.63138 -12.39116 -12.36541 -11.87470 -11.76020 -11.74354 -11.61981 -11.28891 -11.13264 -10.85169 -10.70474 -9.77111 -9.53847 -8.83373 -8.24831 -6.28956 0.11701 0.32511 1.29835 1.40666 1.45048 1.45979 1.58372 2.11153 2.42024 2.69818 3.10118 3.11802 3.29807 3.49183 3.66696 3.75053 3.83963 3.92981 4.00975 4.10661 4.15624 4.24078 4.27655 4.39088 4.50404 4.56169 4.62492 4.73201 4.79008 4.86699 4.87780 4.97009 5.05798 5.08203 5.10028 5.22928 5.26977 5.44715 5.45825 5.58395 5.62159 5.72365 5.81158 5.91280 6.04972 6.31242 6.31558 6.40338 6.76496 6.79715 7.35755 8.92180 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003321 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.048527 B = 8429.175701 C = 9144.191897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.048 3.952 6 C 0.089 3.911 7 C -0.136 4.136 8 O -0.317 6.317 9 C 0.076 3.924 10 H 0.083 0.917 11 C -0.141 4.141 12 C 0.057 3.943 13 N -0.552 5.552 14 C 0.487 3.513 15 O -0.548 6.548 16 C 0.090 3.910 17 H 0.126 0.874 18 N -0.813 5.813 19 C -0.080 4.080 20 C 0.006 3.994 21 C -0.533 4.533 22 H 0.025 0.975 23 C 0.003 3.997 24 N -0.956 5.956 25 Si 0.953 3.047 26 H -0.261 1.261 27 H -0.292 1.292 28 H -0.242 1.242 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.349 0.651 41 H 0.351 0.649 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.226 -9.356 13.509 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.046 4.046 6 C 0.042 3.958 7 C -0.155 4.155 8 O -0.232 6.232 9 C 0.019 3.981 10 H 0.101 0.899 11 C -0.198 4.198 12 C -0.064 4.064 13 N -0.276 5.276 14 C 0.276 3.724 15 O -0.427 6.427 16 C -0.026 4.026 17 H 0.143 0.857 18 N -0.342 5.342 19 C -0.118 4.118 20 C -0.032 4.032 21 C -0.571 4.571 22 H 0.043 0.957 23 C -0.194 4.194 24 N -0.597 5.597 25 Si 0.776 3.224 26 H -0.186 1.186 27 H -0.218 1.218 28 H -0.165 1.165 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.107 0.893 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.595 -9.239 13.307 26.203 hybrid contribution -0.014 0.634 -0.141 0.650 sum -20.608 -8.605 13.167 25.925 Atomic orbital electron populations 1.20824 0.88097 1.04058 1.03430 1.20083 0.97940 0.91454 0.97884 1.21221 0.92863 0.99001 1.02523 1.22026 0.95509 0.98205 1.00040 1.18344 0.83066 0.94680 1.08536 1.18763 0.92312 0.82908 1.01841 1.20573 0.89676 0.99831 1.05412 1.86022 1.26638 1.28098 1.82423 1.23020 0.79067 0.97595 0.98391 0.89923 1.21834 1.01675 0.92551 1.03756 1.23168 0.99266 0.81548 1.02417 1.45993 1.04073 1.11671 1.65888 1.22892 0.92641 0.82279 0.74597 1.90440 1.70949 1.30647 1.50651 1.21755 0.84980 0.98819 0.97020 0.85665 1.59052 1.64459 1.04958 1.05728 1.21285 0.97296 1.00898 0.92355 1.19349 0.91899 0.97398 0.94534 1.21529 0.92773 1.48395 0.94375 0.95666 1.26033 0.99992 0.94483 0.98860 1.70085 1.12740 1.52505 1.24365 0.85618 0.77191 0.79368 0.80246 1.18592 1.21789 1.16513 0.90017 0.90093 0.90324 0.83951 0.83187 0.83015 0.91205 0.89894 0.87709 0.85147 0.89326 0.83707 0.83549 0.92025 0.94046 0.94980 0.95400 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.00 71.23 0.71 -0.60 16 2 C -0.07 -1.45 5.88 -19.86 -0.12 -1.57 16 3 C -0.14 -3.23 9.69 22.29 0.22 -3.01 16 4 C -0.14 -4.10 9.03 22.36 0.20 -3.90 16 5 C 0.05 1.40 6.34 38.05 0.24 1.64 16 6 C 0.09 2.31 6.52 22.62 0.15 2.46 16 7 C -0.14 -2.96 9.62 22.37 0.22 -2.75 16 8 O -0.32 -7.49 9.97 -92.40 -0.92 -8.41 16 9 C 0.08 1.41 3.58 30.77 0.11 1.52 16 10 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 11 C -0.14 -1.80 9.58 71.98 0.69 -1.11 16 12 C 0.06 1.26 5.28 86.40 0.46 1.72 16 13 N -0.55 -15.46 3.01 -627.74 -1.89 -17.35 16 14 C 0.49 14.90 6.85 87.66 0.60 15.50 16 15 O -0.55 -19.20 13.00 -3.06 -0.04 -19.24 16 16 C 0.09 2.61 2.35 44.17 0.10 2.72 16 17 H 0.13 2.99 6.33 -2.39 -0.02 2.98 16 18 N -0.81 -23.01 8.49 -171.80 -1.46 -24.47 16 19 C -0.08 -2.98 4.75 30.60 0.15 -2.84 16 20 C 0.01 0.25 3.93 29.85 0.12 0.37 16 21 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 22 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 23 C 0.00 0.15 5.47 84.66 0.46 0.61 16 24 N -0.96 -60.08 13.96 21.45 0.30 -59.78 16 25 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.08 0.80 8.08 -2.38 -0.02 0.78 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.15 5.08 4.91 -19.89 -0.10 4.98 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.13 2.39 5.69 -2.38 -0.01 2.38 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.35 10.45 8.56 -89.69 -0.77 9.68 16 41 H 0.35 8.20 9.06 -89.69 -0.81 7.39 16 42 H 0.06 2.25 7.64 -2.39 -0.02 2.23 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 44 H 0.03 1.45 6.81 -2.39 -0.02 1.44 16 45 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.50 367.31 1.71 -71.78 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.71 Total: 31.41 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.55 Total: -19.27 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.05 Total: -101.60 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.96 Total: -27.65 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -73.50 1.71 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818123603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.718 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds