Wall clock time and date at job start Tue Mar 31 2020 12:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48502 * 109.47198 * 269.99984 * 3 2 1 5 5 H 1.48502 * 109.47016 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99856 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00369 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47484 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47176 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47134 * 179.97438 * 12 11 10 14 14 O 1.20832 * 119.99987 * 0.02562 * 13 12 11 15 15 O 1.34225 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00515 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47343 * 180.02562 * 16 15 13 18 18 C 1.53935 * 113.73317 * 174.99588 * 17 16 15 19 19 N 1.47962 * 86.30001 * 138.13139 * 18 17 16 20 20 C 1.39002 * 111.00047 * 222.47228 * 19 18 17 21 21 C 1.39139 * 119.70427 * 179.97438 * 20 19 18 22 22 C 1.38301 * 119.09529 * 180.02562 * 21 20 19 23 23 C 1.38876 * 118.50633 * 0.02562 * 22 21 20 24 24 C 1.38025 * 119.33071 * 0.02562 * 23 22 21 25 25 N 1.31974 * 120.85373 * 359.72286 * 24 23 22 26 26 C 1.48187 * 90.67343 * 335.41160 * 19 18 17 27 27 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46785 * 59.99731 * 9 7 2 29 29 H 1.09007 * 109.46956 * 300.00598 * 9 7 2 30 30 H 1.09007 * 109.46952 * 59.99895 * 10 9 7 31 31 H 1.09003 * 109.47062 * 300.00550 * 10 9 7 32 32 H 1.09002 * 109.47033 * 60.00460 * 11 10 9 33 33 H 1.08997 * 109.47312 * 299.99866 * 11 10 9 34 34 H 1.09002 * 109.46670 * 60.00439 * 12 11 10 35 35 H 1.08997 * 109.47126 * 300.00182 * 12 11 10 36 36 H 1.08996 * 109.47197 * 60.00180 * 16 15 13 37 37 H 1.08998 * 109.46904 * 300.00323 * 16 15 13 38 38 H 1.09003 * 112.93644 * 43.43851 * 17 16 15 39 39 H 1.09002 * 113.76229 * 252.50536 * 18 17 16 40 40 H 1.09005 * 113.75703 * 23.76061 * 18 17 16 41 41 H 1.08004 * 120.45265 * 0.02921 * 21 20 19 42 42 H 1.07999 * 120.74462 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.33891 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.57175 * 180.02562 * 24 23 22 45 45 H 1.09005 * 113.65869 * 270.26633 * 26 19 18 46 46 H 1.09002 * 113.92722 * 138.95266 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0615 -4.0791 0.0009 13 6 7.5685 -4.0792 0.0003 14 8 8.1727 -3.0327 -0.0002 15 8 8.2397 -5.2415 0.0014 16 6 9.6897 -5.1656 0.0013 17 6 10.2745 -6.5794 0.0019 18 6 11.8085 -6.6154 -0.1210 19 7 11.7701 -7.6785 0.9074 20 6 12.7761 -7.4970 1.8493 21 6 12.9055 -8.3973 2.9022 22 6 13.9105 -8.2043 3.8324 23 6 14.7555 -7.1131 3.6785 24 6 14.5691 -6.2590 2.6104 25 7 13.6044 -6.4705 1.7350 26 6 10.4719 -7.1702 1.4095 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6579 -3.1506 -0.8897 31 1 3.6585 -3.1502 0.8903 32 1 5.9148 -2.1227 0.8901 33 1 5.9149 -2.1228 -0.8899 34 1 5.6982 -4.5933 -0.8889 35 1 5.6982 -4.5925 0.8911 36 1 10.0257 -4.6327 0.8908 37 1 10.0256 -4.6342 -0.8891 38 1 9.7633 -7.2509 -0.6880 39 1 12.1633 -6.9575 -1.0933 40 1 12.2973 -5.6998 0.2119 41 1 12.2303 -9.2355 2.9918 42 1 14.0354 -8.8870 4.6600 43 1 15.5505 -6.9344 4.3874 44 1 15.2243 -5.4094 2.4867 45 1 10.5699 -6.4175 2.1919 46 1 9.7576 -7.9542 1.6609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842884480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:10 Heat of formation + Delta-G solvation = -23.120311 kcal Electronic energy + Delta-G solvation = -24778.167853 eV Core-core repulsion = 21054.819650 eV Total energy + Delta-G solvation = -3723.348203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.69529 -40.47926 -39.29050 -36.72185 -35.10786 -33.09447 -32.73494 -32.56595 -30.47827 -29.51314 -26.84242 -26.56771 -25.42390 -23.83165 -22.68515 -22.09539 -20.60137 -20.08975 -20.00584 -18.05705 -17.62063 -17.11508 -16.80866 -16.61531 -16.55205 -16.21780 -15.66330 -15.28324 -14.87728 -14.62425 -14.20562 -13.86747 -13.77358 -13.45886 -13.25804 -12.91766 -12.68466 -12.53301 -12.42718 -12.27188 -11.85071 -11.75708 -11.66050 -11.40409 -11.16712 -10.80207 -10.71148 -10.58028 -10.53618 -10.45925 -10.33622 -9.92113 -9.88136 -9.68596 -9.53997 -9.14406 -8.91901 -8.50638 -6.01635 -3.99376 0.57290 0.76489 2.22953 2.51960 3.01372 3.33391 3.34069 3.41269 3.46561 3.72122 4.00365 4.20367 4.35452 4.48703 4.49237 4.58808 4.64607 4.70413 4.80330 4.89286 4.95379 5.05770 5.12544 5.17960 5.19432 5.21998 5.25111 5.32421 5.33064 5.38598 5.61868 5.64040 5.71349 5.76484 5.94657 6.02714 6.05014 6.30757 6.36726 6.60871 6.63764 6.75064 6.94833 7.34773 7.43090 7.47463 7.75342 7.83206 8.56815 9.03325 9.61481 11.11803 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.001648 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.918244 B =16991.038953 C =17249.376524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.111 4.111 12 C -0.112 4.112 13 C 0.460 3.540 14 O -0.507 6.507 15 O -0.359 6.359 16 C 0.075 3.925 17 C -0.116 4.116 18 C 0.025 3.975 19 N -0.436 5.436 20 C 0.273 3.727 21 C -0.165 4.165 22 C -0.061 4.061 23 C -0.191 4.191 24 C 0.119 3.881 25 N -0.515 5.515 26 C 0.025 3.975 27 H 0.262 0.738 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.077 0.923 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.034 -19.272 5.452 36.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.395 6.395 15 O -0.276 6.276 16 C 0.000 4.000 17 C -0.135 4.135 18 C -0.103 4.103 19 N -0.156 5.156 20 C 0.043 3.957 21 C -0.187 4.187 22 C -0.087 4.087 23 C -0.212 4.212 24 C -0.038 4.038 25 N -0.228 5.228 26 C -0.102 4.102 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.095 0.905 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 31.048 -18.973 4.562 36.671 hybrid contribution 0.746 1.080 0.998 1.649 sum 31.794 -17.893 5.561 36.904 Atomic orbital electron populations 1.69921 1.06296 1.26834 1.51363 1.25039 0.94733 0.99203 0.94595 0.86777 0.80405 0.83589 0.78533 1.20313 1.21432 1.18951 1.21176 0.89609 0.94438 1.50630 0.91036 1.19580 0.96997 0.92346 0.96361 1.21475 0.91094 1.00141 1.01289 1.21606 0.97791 0.92355 1.03157 1.21585 0.85651 1.01948 1.05741 1.24201 0.92242 0.81289 0.71937 1.90673 1.70630 1.33050 1.45104 1.86524 1.21271 1.35477 1.84365 1.22998 0.77250 0.96746 1.02971 1.23087 0.96287 0.96010 0.98119 1.23935 0.93838 0.95619 0.96931 1.66207 1.01208 1.40797 1.07341 1.20485 0.93673 0.89961 0.91628 1.21636 1.00778 1.00807 0.95435 1.21547 0.92971 0.96491 0.97727 1.22096 1.01710 0.96920 1.00425 1.22596 0.93681 0.98038 0.89535 1.67579 1.06461 1.19204 1.29535 1.24127 0.89839 0.99337 0.96860 0.92799 0.96586 0.97012 0.92559 0.92564 0.91581 0.91538 0.87674 0.87717 0.91152 0.90537 0.86484 0.88455 0.87784 0.84396 0.84494 0.84641 0.82538 0.90470 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.96 5.15 -26.74 -0.14 -2.10 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.11 -1.39 5.81 -27.88 -0.16 -1.55 16 13 C 0.46 6.19 7.96 36.01 0.29 6.48 16 14 O -0.51 -8.40 15.73 -18.75 -0.30 -8.69 16 15 O -0.36 -4.11 10.22 -39.24 -0.40 -4.51 16 16 C 0.07 0.71 5.32 37.16 0.20 0.91 16 17 C -0.12 -0.87 4.20 -89.68 -0.38 -1.25 16 18 C 0.02 0.19 7.21 -2.77 -0.02 0.17 16 19 N -0.44 -3.69 6.25 -175.76 -1.10 -4.79 16 20 C 0.27 2.43 5.89 -155.03 -0.91 1.52 16 21 C -0.16 -1.19 9.95 -39.22 -0.39 -1.58 16 22 C -0.06 -0.35 10.17 -39.32 -0.40 -0.75 16 23 C -0.19 -1.05 10.10 -39.42 -0.40 -1.45 16 24 C 0.12 0.83 11.17 -17.57 -0.20 0.63 16 25 N -0.51 -4.73 8.21 -12.44 -0.10 -4.83 16 26 C 0.02 0.18 7.45 -2.65 -0.02 0.16 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 37 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.90 6.63 -51.93 -0.34 0.55 16 41 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -34.44 383.40 -10.62 -45.07 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.42 Total: -3.39 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.19 Total: -14.72 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.43 Total: -37.06 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.70 Total: -13.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.44 -10.62 -45.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842884480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.948 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds