Wall clock time and date at job start Tue Mar 31 2020 12:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48502 * 109.47198 * 269.99984 * 3 2 1 5 5 H 1.48502 * 109.47016 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99856 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00369 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47484 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47176 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47134 * 179.97438 * 12 11 10 14 14 O 1.20832 * 119.99987 * 0.02562 * 13 12 11 15 15 O 1.34225 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00515 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47343 * 180.02562 * 16 15 13 18 18 C 1.53935 * 113.73317 * 174.99588 * 17 16 15 19 19 N 1.47962 * 86.30001 * 138.13139 * 18 17 16 20 20 C 1.39002 * 111.00047 * 222.47228 * 19 18 17 21 21 C 1.39139 * 119.70427 * 179.97438 * 20 19 18 22 22 C 1.38301 * 119.09529 * 180.02562 * 21 20 19 23 23 C 1.38876 * 118.50633 * 0.02562 * 22 21 20 24 24 C 1.38025 * 119.33071 * 0.02562 * 23 22 21 25 25 N 1.31974 * 120.85373 * 359.72286 * 24 23 22 26 26 C 1.48187 * 90.67343 * 335.41160 * 19 18 17 27 27 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46785 * 59.99731 * 9 7 2 29 29 H 1.09007 * 109.46956 * 300.00598 * 9 7 2 30 30 H 1.09007 * 109.46952 * 59.99895 * 10 9 7 31 31 H 1.09003 * 109.47062 * 300.00550 * 10 9 7 32 32 H 1.09002 * 109.47033 * 60.00460 * 11 10 9 33 33 H 1.08997 * 109.47312 * 299.99866 * 11 10 9 34 34 H 1.09002 * 109.46670 * 60.00439 * 12 11 10 35 35 H 1.08997 * 109.47126 * 300.00182 * 12 11 10 36 36 H 1.08996 * 109.47197 * 60.00180 * 16 15 13 37 37 H 1.08998 * 109.46904 * 300.00323 * 16 15 13 38 38 H 1.09003 * 112.93644 * 43.43851 * 17 16 15 39 39 H 1.09002 * 113.76229 * 252.50536 * 18 17 16 40 40 H 1.09005 * 113.75703 * 23.76061 * 18 17 16 41 41 H 1.08004 * 120.45265 * 0.02921 * 21 20 19 42 42 H 1.07999 * 120.74462 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.33891 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.57175 * 180.02562 * 24 23 22 45 45 H 1.09005 * 113.65869 * 270.26633 * 26 19 18 46 46 H 1.09002 * 113.92722 * 138.95266 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0615 -4.0791 0.0009 13 6 7.5685 -4.0792 0.0003 14 8 8.1727 -3.0327 -0.0002 15 8 8.2397 -5.2415 0.0014 16 6 9.6897 -5.1656 0.0013 17 6 10.2745 -6.5794 0.0019 18 6 11.8085 -6.6154 -0.1210 19 7 11.7701 -7.6785 0.9074 20 6 12.7761 -7.4970 1.8493 21 6 12.9055 -8.3973 2.9022 22 6 13.9105 -8.2043 3.8324 23 6 14.7555 -7.1131 3.6785 24 6 14.5691 -6.2590 2.6104 25 7 13.6044 -6.4705 1.7350 26 6 10.4719 -7.1702 1.4095 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6579 -3.1506 -0.8897 31 1 3.6585 -3.1502 0.8903 32 1 5.9148 -2.1227 0.8901 33 1 5.9149 -2.1228 -0.8899 34 1 5.6982 -4.5933 -0.8889 35 1 5.6982 -4.5925 0.8911 36 1 10.0257 -4.6327 0.8908 37 1 10.0256 -4.6342 -0.8891 38 1 9.7633 -7.2509 -0.6880 39 1 12.1633 -6.9575 -1.0933 40 1 12.2973 -5.6998 0.2119 41 1 12.2303 -9.2355 2.9918 42 1 14.0354 -8.8870 4.6600 43 1 15.5505 -6.9344 4.3874 44 1 15.2243 -5.4094 2.4867 45 1 10.5699 -6.4175 2.1919 46 1 9.7576 -7.9542 1.6609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842884480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:09 Heat of formation + Delta-G solvation = -43.332925 kcal Electronic energy + Delta-G solvation = -24779.044338 eV Core-core repulsion = 21054.819650 eV Total energy + Delta-G solvation = -3724.224688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27589 -41.46023 -39.86093 -37.75442 -36.64250 -34.64394 -33.60426 -33.22758 -32.04908 -30.26952 -28.00986 -27.40534 -26.36261 -24.34321 -24.10250 -22.77644 -21.92363 -21.50888 -20.69297 -18.90766 -18.63672 -18.53085 -17.87638 -17.50108 -17.35867 -16.73701 -16.49491 -16.32044 -16.23144 -15.60526 -15.35872 -14.82366 -14.61463 -14.40169 -14.21139 -14.08184 -13.83227 -13.77207 -13.55649 -13.43106 -13.01135 -12.87282 -12.52840 -12.34864 -12.32588 -12.12944 -12.11033 -11.75595 -11.67681 -11.50304 -11.35851 -11.30575 -11.21788 -11.04198 -10.85382 -10.75132 -10.44395 -9.45423 -8.28732 -6.31914 0.07855 0.29811 1.18850 1.35597 1.37098 1.49534 1.60147 2.36544 2.48211 2.81470 3.06815 3.14009 3.39481 3.57764 3.84187 3.87044 3.99959 4.02825 4.07394 4.11397 4.16070 4.20708 4.26385 4.32892 4.41675 4.47146 4.57436 4.61729 4.62659 4.76105 4.78671 4.79910 4.81697 4.83539 5.08825 5.10853 5.16753 5.19335 5.23271 5.26989 5.42055 5.56680 5.60640 5.65770 5.69312 6.07961 6.30487 6.73483 6.76578 6.91978 7.32940 8.87828 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.001648 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.918244 B =16991.038953 C =17249.376524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.095 4.095 11 C -0.102 4.102 12 C -0.106 4.106 13 C 0.465 3.535 14 O -0.544 6.544 15 O -0.352 6.352 16 C 0.074 3.926 17 C -0.104 4.104 18 C 0.027 3.973 19 N -0.442 5.442 20 C 0.247 3.753 21 C -0.175 4.175 22 C -0.062 4.062 23 C -0.186 4.186 24 C 0.101 3.899 25 N -0.541 5.541 26 C 0.027 3.973 27 H 0.266 0.734 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.174 0.826 45 H 0.068 0.932 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.124 -20.012 6.106 39.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.310 3.690 14 O -0.434 6.434 15 O -0.269 6.269 16 C 0.000 4.000 17 C -0.123 4.123 18 C -0.102 4.102 19 N -0.161 5.161 20 C 0.017 3.983 21 C -0.197 4.197 22 C -0.088 4.088 23 C -0.206 4.206 24 C -0.056 4.056 25 N -0.255 5.255 26 C -0.099 4.099 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.183 0.817 43 H 0.181 0.819 44 H 0.191 0.809 45 H 0.086 0.914 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 33.155 -19.747 5.219 38.941 hybrid contribution 0.119 1.224 0.837 1.487 sum 33.274 -18.523 6.055 38.560 Atomic orbital electron populations 1.70065 1.08158 1.28054 1.52883 1.25997 0.95604 1.03407 0.94300 0.85693 0.79422 0.78596 0.79157 1.19251 1.20860 1.17448 1.21562 0.92201 0.93225 1.49973 0.94456 1.19583 0.93834 0.95821 0.96258 1.21332 0.93262 0.96899 1.01730 1.21391 0.95283 0.94884 1.02443 1.21506 0.85013 0.99751 1.07988 1.24312 0.92596 0.81138 0.70919 1.90668 1.71394 1.34315 1.46981 1.86510 1.22248 1.34368 1.83776 1.23125 0.76160 0.98057 1.02634 1.23018 0.95935 0.94816 0.98520 1.23883 0.93824 0.95280 0.97173 1.66241 1.01506 1.40819 1.07577 1.20693 0.94198 0.90787 0.92583 1.21856 1.01564 1.00832 0.95426 1.21942 0.92123 0.96843 0.97937 1.22444 1.01949 0.96136 1.00118 1.23037 0.93656 0.99098 0.89841 1.67547 1.07352 1.19841 1.30725 1.24123 0.89937 0.99448 0.96420 0.92555 0.96633 0.96720 0.92135 0.92195 0.92415 0.92265 0.85389 0.85468 0.91889 0.90590 0.85526 0.87853 0.88905 0.83511 0.81712 0.81868 0.80852 0.91360 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 7 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 9 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 10 C -0.09 -3.50 5.15 30.59 0.16 -3.34 16 11 C -0.10 -3.11 4.50 30.59 0.14 -2.98 16 12 C -0.11 -2.36 5.81 29.85 0.17 -2.19 16 13 C 0.47 11.78 7.96 71.24 0.57 12.34 16 14 O -0.54 -17.56 15.73 21.95 0.35 -17.22 16 15 O -0.35 -7.47 10.22 -51.37 -0.53 -8.00 16 16 C 0.07 1.37 5.32 71.98 0.38 1.75 16 17 C -0.10 -1.47 4.20 -10.15 -0.04 -1.51 16 18 C 0.03 0.41 7.21 86.41 0.62 1.03 16 19 N -0.44 -7.27 6.25 -709.98 -4.44 -11.71 16 20 C 0.25 4.33 5.89 133.07 0.78 5.11 16 21 C -0.18 -2.35 9.95 22.50 0.22 -2.13 16 22 C -0.06 -0.58 10.17 22.44 0.23 -0.35 16 23 C -0.19 -1.69 10.10 22.37 0.23 -1.47 16 24 C 0.10 1.31 11.17 84.62 0.95 2.26 16 25 N -0.54 -9.89 8.21 -193.26 -1.59 -11.48 16 26 C 0.03 0.38 7.45 86.36 0.64 1.03 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 29 H 0.01 0.68 7.57 -2.38 -0.02 0.66 16 30 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 1.26 7.84 -2.39 -0.02 1.24 16 37 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.65 6.63 -2.38 -0.02 1.63 16 41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 44 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.07 1.08 7.66 -2.38 -0.02 1.07 16 46 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.19 383.40 2.75 -72.44 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.89 Total: 9.87 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 5.88 Total: -21.25 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -5.73 Total: -83.19 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.18 Total: -25.21 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -75.19 2.75 -72.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842884480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.104 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds