Wall clock time and date at job start Tue Mar 31 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47318 * 239.99718 * 3 2 1 5 5 H 1.48507 * 109.47090 * 120.00084 * 3 2 1 6 6 H 1.48495 * 109.47245 * 359.97438 * 3 2 1 7 7 C 1.37871 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 175.31930 * 7 2 1 9 9 C 1.50705 * 119.99918 * 355.31914 * 7 2 1 10 10 H 1.08996 * 109.49792 * 35.00599 * 9 7 2 11 11 C 1.53120 * 109.50054 * 155.08374 * 9 7 2 12 12 C 1.53127 * 109.15581 * 177.59721 * 11 9 7 13 13 C 1.53036 * 109.27894 * 302.34595 * 12 11 9 14 14 N 1.46843 * 109.52170 * 59.18207 * 13 12 11 15 15 C 1.46904 * 111.00106 * 174.16190 * 14 13 12 16 16 N 1.46500 * 109.47255 * 84.17973 * 15 14 13 17 17 C 1.34695 * 123.07500 * 270.09818 * 16 15 14 18 18 O 1.21233 * 126.38613 * 11.87724 * 17 16 15 19 19 C 1.53784 * 107.21963 * 191.89718 * 17 16 15 20 20 H 1.08999 * 113.72752 * 211.39443 * 19 17 16 21 21 C 1.53076 * 104.80295 * 87.27144 * 19 17 16 22 22 C 1.48943 * 113.36069 * 214.71972 * 21 19 17 23 23 C 1.29149 * 124.88086 * 17.54000 * 22 21 19 24 24 C 1.49605 * 123.29425 * 357.69115 * 23 22 21 25 25 C 1.49304 * 113.70503 * 11.14375 * 24 23 22 26 26 H 1.08994 * 107.43424 * 205.21183 * 25 24 23 27 27 C 1.35188 * 123.06543 * 89.80708 * 16 15 14 28 28 O 1.21229 * 126.85967 * 9.76032 * 27 16 15 29 29 C 1.46856 * 111.23355 * 298.27320 * 14 13 12 30 30 H 0.97001 * 119.99852 * 185.31097 * 1 2 3 31 31 H 1.09002 * 109.52688 * 297.50181 * 11 9 7 32 32 H 1.08994 * 109.52243 * 57.63199 * 11 9 7 33 33 H 1.09002 * 109.50210 * 62.29003 * 12 11 9 34 34 H 1.09000 * 109.49869 * 182.36620 * 12 11 9 35 35 H 1.08994 * 109.46083 * 179.19623 * 13 12 11 36 36 H 1.08998 * 109.46151 * 299.16144 * 13 12 11 37 37 H 1.08998 * 109.47625 * 204.18755 * 15 14 13 38 38 H 1.09003 * 109.46755 * 324.18893 * 15 14 13 39 39 H 1.09005 * 108.70356 * 335.71955 * 21 19 17 40 40 H 1.09004 * 108.70855 * 93.84058 * 21 19 17 41 41 H 1.07993 * 117.55823 * 197.51586 * 22 21 19 42 42 H 1.08001 * 118.34838 * 177.67509 * 23 22 21 43 43 H 1.09002 * 108.63555 * 132.25291 * 24 23 22 44 44 H 1.09002 * 108.63524 * 250.20864 * 24 23 22 45 45 H 1.08996 * 109.42697 * 301.68941 * 29 14 13 46 46 H 1.09001 * 109.49522 * 181.72318 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1939 0.0005 8 1 3.0819 -1.1955 -0.0758 9 6 1.2549 -2.4969 0.1076 10 1 0.3046 -2.4143 -0.4198 11 6 2.0895 -3.6195 -0.5152 12 6 1.3477 -4.9487 -0.3487 13 6 1.0861 -5.1985 1.1383 14 7 0.2840 -4.0978 1.6871 15 6 -0.1036 -4.3711 3.0775 16 7 0.9819 -3.9687 3.9752 17 6 1.9753 -4.7993 4.3459 18 8 2.2288 -5.8800 3.8584 19 6 2.7278 -4.1212 5.5031 20 1 3.7895 -4.3654 5.5387 21 6 1.9695 -4.5442 6.7637 22 6 1.9328 -3.4880 7.8132 23 6 2.1781 -2.2364 7.6102 24 6 2.5858 -1.6844 6.2808 25 6 2.4308 -2.6534 5.1555 26 1 3.1333 -2.3622 4.3747 27 6 1.0810 -2.7280 4.5028 28 8 0.2455 -1.8506 4.4599 29 6 0.9952 -2.8173 1.5813 30 1 -0.4850 -0.8365 0.0778 31 1 2.2396 -3.4165 -1.5756 32 1 3.0560 -3.6755 -0.0146 33 1 0.3986 -4.9052 -0.8829 34 1 1.9560 -5.7579 -0.7528 35 1 0.5455 -6.1372 1.2592 36 1 2.0362 -5.2557 1.6696 37 1 -1.0044 -3.8078 3.3211 38 1 -0.2980 -5.4369 3.1976 39 1 0.9461 -4.7982 6.4874 40 1 2.4488 -5.4308 7.1791 41 1 1.6820 -3.7913 8.8188 42 1 2.0839 -1.5539 8.4420 43 1 1.9796 -0.8038 6.0686 44 1 3.6315 -1.3816 6.3353 45 1 1.9452 -2.8854 2.1112 46 1 0.3888 -2.0268 2.0235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:27 Heat of formation + Delta-G solvation = -42.655818 kcal Electronic energy + Delta-G solvation = -28941.799761 eV Core-core repulsion = 25217.604435 eV Total energy + Delta-G solvation = -3724.195326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.40682 -38.63528 -38.43095 -37.29889 -35.56141 -33.76849 -32.49912 -31.53640 -30.84058 -29.52114 -26.51974 -25.05897 -24.51594 -24.00309 -22.32478 -21.86303 -21.47841 -19.77646 -18.82814 -18.13408 -17.19858 -16.96635 -16.64526 -16.04530 -15.95197 -15.05874 -14.67492 -14.56288 -14.45383 -14.11764 -13.77167 -13.73874 -13.49233 -13.42147 -13.37773 -13.03717 -12.72719 -12.69461 -12.28503 -12.15880 -11.80155 -11.44725 -11.33602 -11.23779 -10.79998 -10.74129 -10.49989 -10.27714 -10.16888 -10.08406 -9.95538 -9.81297 -9.59476 -9.23519 -9.10132 -8.52465 -8.28515 -7.99726 -6.31947 -4.05384 1.60811 2.04296 2.59031 2.66177 3.43383 3.44472 3.64191 3.73052 4.10830 4.15841 4.37838 4.45361 4.56584 4.77284 4.90344 4.97054 5.05233 5.07723 5.23798 5.39255 5.41618 5.44741 5.48640 5.56119 5.59124 5.67497 5.73602 5.79737 5.84691 5.86461 6.09131 6.23336 6.34994 6.35112 6.44588 6.49404 6.67290 6.73409 6.77142 6.86550 6.87090 7.33291 7.40357 7.49685 7.55082 7.68477 7.88539 8.28775 8.45830 8.91081 9.68362 11.06142 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.005748 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.477300 B = 4870.027118 C = 6364.275317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 1.063 2.937 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.599 4.599 8 H 0.046 0.954 9 C 0.037 3.963 10 H 0.040 0.960 11 C -0.105 4.105 12 C -0.117 4.117 13 C 0.058 3.942 14 N -0.534 5.534 15 C 0.259 3.741 16 N -0.602 5.602 17 C 0.525 3.475 18 O -0.476 6.476 19 C -0.104 4.104 20 H 0.131 0.869 21 C -0.080 4.080 22 C -0.161 4.161 23 C -0.141 4.141 24 C -0.076 4.076 25 C -0.129 4.129 26 H 0.116 0.884 27 C 0.544 3.456 28 O -0.454 6.454 29 C 0.067 3.933 30 H 0.273 0.727 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.012 0.988 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -9.048 14.918 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.892 3.108 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.637 4.637 8 H 0.065 0.935 9 C 0.018 3.982 10 H 0.058 0.942 11 C -0.142 4.142 12 C -0.155 4.155 13 C -0.070 4.070 14 N -0.259 5.259 15 C 0.049 3.951 16 N -0.350 5.350 17 C 0.313 3.687 18 O -0.347 6.347 19 C -0.126 4.126 20 H 0.149 0.851 21 C -0.118 4.118 22 C -0.179 4.179 23 C -0.159 4.159 24 C -0.113 4.113 25 C -0.150 4.150 26 H 0.133 0.867 27 C 0.332 3.668 28 O -0.323 6.323 29 C -0.060 4.060 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.031 0.969 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.783 -7.481 14.207 16.496 hybrid contribution 0.924 -1.804 0.492 2.086 sum 4.707 -9.286 14.699 18.012 Atomic orbital electron populations 1.70761 1.06787 1.31369 1.45052 1.25782 0.96530 1.02449 0.93418 0.83632 0.75012 0.75741 0.76438 1.21497 1.21514 1.20699 1.21869 0.94298 0.91502 1.56060 0.93539 1.18865 0.96430 0.93261 0.89653 0.94183 1.21601 0.98151 0.94068 1.00415 1.21645 1.00638 0.98287 0.94942 1.22139 0.95916 0.92920 0.96046 1.62638 1.44455 1.04790 1.14060 1.22944 0.89056 1.00984 0.82085 1.48338 1.26782 1.14335 1.45558 1.21667 0.79957 0.84337 0.82723 1.90736 1.66704 1.20180 1.57063 1.22643 1.02226 0.93599 0.94132 0.85083 1.20083 1.00413 0.98733 0.92533 1.21526 1.02776 0.94556 0.99017 1.21893 0.99725 0.96312 0.97935 1.19353 1.03252 0.98174 0.90475 1.21034 0.96950 0.96123 1.00900 0.86663 1.20416 0.88459 0.80986 0.76906 1.90801 1.45606 1.40468 1.55393 1.22609 0.94117 0.87190 1.02044 0.91499 0.92883 0.94075 0.91794 0.92876 0.91936 0.94547 0.87661 0.89093 0.90751 0.89530 0.87284 0.86788 0.88777 0.89132 0.96925 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.62 55.43 0.76 -26.75 16 2 C 0.02 0.68 5.45 -17.82 -0.10 0.59 16 3 Si 1.06 25.29 29.91 -169.99 -5.08 20.21 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -16.72 8.32 -34.44 -0.29 -17.01 16 8 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 9 C 0.04 0.94 1.99 -91.69 -0.18 0.75 16 10 H 0.04 1.12 6.67 -51.93 -0.35 0.77 16 11 C -0.10 -2.28 5.27 -26.60 -0.14 -2.42 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C 0.06 1.04 5.02 -3.84 -0.02 1.02 16 14 N -0.53 -10.45 4.89 -238.58 -1.17 -11.62 16 15 C 0.26 4.29 6.01 -63.31 -0.38 3.91 16 16 N -0.60 -9.46 1.82 -117.49 -0.21 -9.68 16 17 C 0.53 7.55 6.35 -9.46 -0.06 7.48 16 18 O -0.48 -7.84 15.86 5.60 0.09 -7.75 16 19 C -0.10 -1.13 4.07 -89.79 -0.37 -1.49 16 20 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.08 -0.75 5.19 -28.68 -0.15 -0.90 16 22 C -0.16 -1.40 9.76 -36.36 -0.35 -1.76 16 23 C -0.14 -1.28 9.91 -36.05 -0.36 -1.64 16 24 C -0.08 -0.79 5.66 -30.23 -0.17 -0.96 16 25 C -0.13 -1.61 2.38 -93.49 -0.22 -1.84 16 26 H 0.12 1.48 8.10 -51.93 -0.42 1.06 16 27 C 0.54 8.94 5.56 -11.08 -0.06 8.88 16 28 O -0.45 -9.08 16.37 5.60 0.09 -8.99 16 29 C 0.07 1.54 3.41 -3.83 -0.01 1.53 16 30 H 0.27 8.38 6.66 -40.82 -0.27 8.11 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 36 H 0.04 0.70 6.22 -51.93 -0.32 0.38 16 37 H 0.11 1.76 7.87 -51.93 -0.41 1.35 16 38 H 0.09 1.32 7.60 -51.93 -0.39 0.93 16 39 H 0.07 0.77 7.44 -51.93 -0.39 0.38 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.09 1.12 7.79 -51.93 -0.40 0.71 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.01 0.29 6.89 -51.93 -0.36 -0.07 16 46 H 0.07 1.92 7.00 -51.93 -0.36 1.56 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -32.54 355.30 -10.30 -42.83 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.10 Total: 2.57 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.02 Total: -6.18 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.63 Total: -48.05 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.18 Total: -16.73 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.54 -10.30 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.176 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds