Wall clock time and date at job start Tue Mar 31 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47318 * 239.99718 * 3 2 1 5 5 H 1.48507 * 109.47090 * 120.00084 * 3 2 1 6 6 H 1.48495 * 109.47245 * 359.97438 * 3 2 1 7 7 C 1.37871 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00321 * 175.31930 * 7 2 1 9 9 C 1.50705 * 119.99918 * 355.31914 * 7 2 1 10 10 H 1.08996 * 109.49792 * 35.00599 * 9 7 2 11 11 C 1.53120 * 109.50054 * 155.08374 * 9 7 2 12 12 C 1.53127 * 109.15581 * 177.59721 * 11 9 7 13 13 C 1.53036 * 109.27894 * 302.34595 * 12 11 9 14 14 N 1.46843 * 109.52170 * 59.18207 * 13 12 11 15 15 C 1.46904 * 111.00106 * 174.16190 * 14 13 12 16 16 N 1.46500 * 109.47255 * 84.17973 * 15 14 13 17 17 C 1.34695 * 123.07500 * 270.09818 * 16 15 14 18 18 O 1.21233 * 126.38613 * 11.87724 * 17 16 15 19 19 C 1.53784 * 107.21963 * 191.89718 * 17 16 15 20 20 H 1.08999 * 113.72752 * 211.39443 * 19 17 16 21 21 C 1.53076 * 104.80295 * 87.27144 * 19 17 16 22 22 C 1.48943 * 113.36069 * 214.71972 * 21 19 17 23 23 C 1.29149 * 124.88086 * 17.54000 * 22 21 19 24 24 C 1.49605 * 123.29425 * 357.69115 * 23 22 21 25 25 C 1.49304 * 113.70503 * 11.14375 * 24 23 22 26 26 H 1.08994 * 107.43424 * 205.21183 * 25 24 23 27 27 C 1.35188 * 123.06543 * 89.80708 * 16 15 14 28 28 O 1.21229 * 126.85967 * 9.76032 * 27 16 15 29 29 C 1.46856 * 111.23355 * 298.27320 * 14 13 12 30 30 H 0.97001 * 119.99852 * 185.31097 * 1 2 3 31 31 H 1.09002 * 109.52688 * 297.50181 * 11 9 7 32 32 H 1.08994 * 109.52243 * 57.63199 * 11 9 7 33 33 H 1.09002 * 109.50210 * 62.29003 * 12 11 9 34 34 H 1.09000 * 109.49869 * 182.36620 * 12 11 9 35 35 H 1.08994 * 109.46083 * 179.19623 * 13 12 11 36 36 H 1.08998 * 109.46151 * 299.16144 * 13 12 11 37 37 H 1.08998 * 109.47625 * 204.18755 * 15 14 13 38 38 H 1.09003 * 109.46755 * 324.18893 * 15 14 13 39 39 H 1.09005 * 108.70356 * 335.71955 * 21 19 17 40 40 H 1.09004 * 108.70855 * 93.84058 * 21 19 17 41 41 H 1.07993 * 117.55823 * 197.51586 * 22 21 19 42 42 H 1.08001 * 118.34838 * 177.67509 * 23 22 21 43 43 H 1.09002 * 108.63555 * 132.25291 * 24 23 22 44 44 H 1.09002 * 108.63524 * 250.20864 * 24 23 22 45 45 H 1.08996 * 109.42697 * 301.68941 * 29 14 13 46 46 H 1.09001 * 109.49522 * 181.72318 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1939 0.0005 8 1 3.0819 -1.1955 -0.0758 9 6 1.2549 -2.4969 0.1076 10 1 0.3046 -2.4143 -0.4198 11 6 2.0895 -3.6195 -0.5152 12 6 1.3477 -4.9487 -0.3487 13 6 1.0861 -5.1985 1.1383 14 7 0.2840 -4.0978 1.6871 15 6 -0.1036 -4.3711 3.0775 16 7 0.9819 -3.9687 3.9752 17 6 1.9753 -4.7993 4.3459 18 8 2.2288 -5.8800 3.8584 19 6 2.7278 -4.1212 5.5031 20 1 3.7895 -4.3654 5.5387 21 6 1.9695 -4.5442 6.7637 22 6 1.9328 -3.4880 7.8132 23 6 2.1781 -2.2364 7.6102 24 6 2.5858 -1.6844 6.2808 25 6 2.4308 -2.6534 5.1555 26 1 3.1333 -2.3622 4.3747 27 6 1.0810 -2.7280 4.5028 28 8 0.2455 -1.8506 4.4599 29 6 0.9952 -2.8173 1.5813 30 1 -0.4850 -0.8365 0.0778 31 1 2.2396 -3.4165 -1.5756 32 1 3.0560 -3.6755 -0.0146 33 1 0.3986 -4.9052 -0.8829 34 1 1.9560 -5.7579 -0.7528 35 1 0.5455 -6.1372 1.2592 36 1 2.0362 -5.2557 1.6696 37 1 -1.0044 -3.8078 3.3211 38 1 -0.2980 -5.4369 3.1976 39 1 0.9461 -4.7982 6.4874 40 1 2.4488 -5.4308 7.1791 41 1 1.6820 -3.7913 8.8188 42 1 2.0839 -1.5539 8.4420 43 1 1.9796 -0.8038 6.0686 44 1 3.6315 -1.3816 6.3353 45 1 1.9452 -2.8854 2.1112 46 1 0.3888 -2.0268 2.0235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:27 Heat of formation + Delta-G solvation = -62.600138 kcal Electronic energy + Delta-G solvation = -28942.664611 eV Core-core repulsion = 25217.604435 eV Total energy + Delta-G solvation = -3725.060177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.58777 -40.07909 -39.77253 -38.45063 -36.93430 -35.54748 -34.06345 -32.42235 -32.00492 -31.40343 -27.89148 -26.63582 -26.11750 -25.04074 -23.81291 -23.39390 -22.84961 -21.15144 -20.39969 -19.20336 -18.95141 -18.31384 -17.84814 -17.27325 -17.00517 -16.28627 -16.19688 -15.98888 -15.67828 -15.60378 -15.53954 -15.32866 -15.01272 -14.59916 -14.48653 -14.34060 -13.98409 -13.77748 -13.58605 -13.50067 -13.21792 -13.03373 -12.94376 -12.64349 -12.36097 -12.24466 -11.99935 -11.89922 -11.61929 -11.54582 -11.41508 -11.27000 -11.02059 -10.85675 -10.60561 -10.42533 -9.92306 -9.61059 -8.61852 -6.35537 0.38604 1.34508 1.38411 1.46452 1.48705 1.56751 1.75851 2.54137 2.70371 2.85114 3.03461 3.21022 3.22454 3.57926 3.75587 3.92755 3.98993 4.02010 4.03677 4.08394 4.14539 4.19123 4.26395 4.37786 4.43370 4.47090 4.55405 4.65599 4.68017 4.72858 4.76148 4.83166 4.89538 4.93566 4.95452 5.04166 5.11206 5.14517 5.47541 5.56390 5.62297 5.69229 5.79785 5.97383 5.99132 6.14699 6.16652 6.19672 6.61538 6.63591 7.46842 8.75761 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.005748 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.477300 B = 4870.027118 C = 6364.275317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.027 4.027 3 Si 1.107 2.893 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.286 1.286 7 C -0.608 4.608 8 H 0.044 0.956 9 C 0.030 3.970 10 H 0.005 0.995 11 C -0.099 4.099 12 C -0.111 4.111 13 C 0.062 3.938 14 N -0.547 5.547 15 C 0.257 3.743 16 N -0.606 5.606 17 C 0.522 3.478 18 O -0.494 6.494 19 C -0.085 4.085 20 H 0.163 0.837 21 C -0.081 4.081 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.075 4.075 25 C -0.124 4.124 26 H 0.112 0.888 27 C 0.536 3.464 28 O -0.502 6.502 29 C 0.098 3.902 30 H 0.257 0.743 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.008 0.992 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -10.563 16.611 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.226 4.226 3 Si 0.928 3.072 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.063 0.937 9 C 0.011 3.989 10 H 0.023 0.977 11 C -0.137 4.137 12 C -0.148 4.148 13 C -0.065 4.065 14 N -0.272 5.272 15 C 0.048 3.952 16 N -0.353 5.353 17 C 0.312 3.688 18 O -0.366 6.366 19 C -0.106 4.106 20 H 0.180 0.820 21 C -0.118 4.118 22 C -0.176 4.176 23 C -0.168 4.168 24 C -0.112 4.112 25 C -0.145 4.145 26 H 0.129 0.871 27 C 0.326 3.674 28 O -0.373 6.373 29 C -0.030 4.030 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.026 0.974 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.977 -9.046 15.913 19.255 hybrid contribution 0.217 -1.413 -0.065 1.431 sum 6.194 -10.459 15.848 19.973 Atomic orbital electron populations 1.70893 1.07900 1.30400 1.47695 1.27220 0.96513 1.06305 0.92596 0.83094 0.74338 0.71708 0.78038 1.19323 1.19395 1.21127 1.22228 0.94353 0.92935 1.55118 0.93728 1.18858 0.95072 0.93979 0.91031 0.97694 1.21487 0.97812 0.94765 0.99622 1.21612 1.00538 0.97201 0.95491 1.22173 0.95734 0.93169 0.95402 1.62498 1.44334 1.03860 1.16491 1.22887 0.89160 1.02329 0.80832 1.48371 1.27003 1.14721 1.45241 1.22301 0.79484 0.83894 0.83102 1.90723 1.67080 1.20928 1.57831 1.22786 1.03653 0.91128 0.93043 0.81989 1.20157 0.99728 1.00044 0.91908 1.21687 1.02061 0.94117 0.99767 1.21994 1.00360 0.96944 0.97544 1.19393 1.04487 0.96820 0.90547 1.21115 0.93780 0.98184 1.01448 0.87060 1.21170 0.89405 0.80407 0.76378 1.90769 1.47508 1.41834 1.57216 1.21949 0.93225 0.88079 0.99740 0.93246 0.93385 0.94087 0.92147 0.89548 0.89240 0.95187 0.88668 0.86468 0.92008 0.86972 0.85097 0.85120 0.90868 0.86659 0.97426 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.19 13.62 21.44 0.29 -58.90 16 2 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 3 Si 1.11 51.33 29.91 68.60 2.05 53.38 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.61 -34.86 8.32 25.60 0.21 -34.65 16 8 H 0.04 2.52 7.81 -2.91 -0.02 2.49 16 9 C 0.03 1.56 1.99 -11.49 -0.02 1.53 16 10 H 0.00 0.29 6.67 -2.39 -0.02 0.27 16 11 C -0.10 -4.32 5.27 30.68 0.16 -4.15 16 12 C -0.11 -3.93 6.09 30.65 0.19 -3.74 16 13 C 0.06 2.17 5.02 86.33 0.43 2.60 16 14 N -0.55 -21.60 4.89 -908.72 -4.44 -26.05 16 15 C 0.26 8.58 6.01 170.80 1.03 9.61 16 16 N -0.61 -18.99 1.82 -762.25 -1.39 -20.38 16 17 C 0.52 14.15 6.35 88.68 0.56 14.71 16 18 O -0.49 -15.16 15.86 -2.88 -0.05 -15.20 16 19 C -0.09 -1.62 4.07 -10.26 -0.04 -1.66 16 20 H 0.16 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.08 -1.27 5.19 29.33 0.15 -1.12 16 22 C -0.16 -2.28 9.76 26.97 0.26 -2.02 16 23 C -0.15 -2.39 9.91 27.17 0.27 -2.12 16 24 C -0.08 -1.48 5.66 28.33 0.16 -1.32 16 25 C -0.12 -2.99 2.38 -12.65 -0.03 -3.03 16 26 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 27 C 0.54 18.03 5.56 87.41 0.49 18.51 16 28 O -0.50 -21.24 16.37 -2.87 -0.05 -21.29 16 29 C 0.10 4.67 3.41 86.32 0.29 4.96 16 30 H 0.26 16.78 6.66 -92.71 -0.62 16.16 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 2.67 7.91 -2.39 -0.02 2.65 16 36 H 0.03 1.10 6.22 -2.39 -0.01 1.08 16 37 H 0.10 3.33 7.87 -2.39 -0.02 3.31 16 38 H 0.12 3.26 7.60 -2.39 -0.02 3.24 16 39 H 0.06 1.15 7.44 -2.38 -0.02 1.14 16 40 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.07 1.76 7.79 -2.39 -0.02 1.74 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.01 0.36 6.89 -2.39 -0.02 0.34 16 46 H 0.03 1.86 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -74.32 355.30 2.12 -72.20 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.12 Total: 19.25 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 4.58 Total: -3.01 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -5.54 Total: -105.33 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.09 Total: -36.49 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -74.32 2.12 -72.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.596 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds