Wall clock time and date at job start Tue Mar 31 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00357 * 3 2 1 6 6 H 1.48497 * 109.46991 * 60.00415 * 3 2 1 7 7 C 1.37878 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50701 * 60.07456 * 9 7 2 11 11 C 1.53123 * 109.50215 * 299.99742 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.33526 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 N 1.46494 * 109.47405 * 80.78914 * 15 14 13 17 17 C 1.34702 * 123.06577 * 89.99873 * 16 15 14 18 18 O 1.21232 * 126.39113 * 11.88251 * 17 16 15 19 19 C 1.53780 * 107.21743 * 191.89873 * 17 16 15 20 20 H 1.09009 * 113.73179 * 211.39736 * 19 17 16 21 21 C 1.53077 * 104.80211 * 87.27412 * 19 17 16 22 22 C 1.48945 * 113.35844 * 214.71963 * 21 19 17 23 23 C 1.29147 * 124.88471 * 17.49475 * 22 21 19 24 24 C 1.49609 * 123.29470 * 357.69137 * 23 22 21 25 25 C 1.49344 * 113.68832 * 11.22285 * 24 23 22 26 26 H 1.08995 * 107.39527 * 205.15330 * 25 24 23 27 27 C 1.35180 * 123.07143 * 269.70945 * 16 15 14 28 28 O 1.21226 * 126.86014 * 9.76569 * 27 16 15 29 29 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 30 30 H 0.96996 * 120.00253 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.52319 * 302.27319 * 11 9 7 32 32 H 1.08995 * 109.52318 * 62.40000 * 11 9 7 33 33 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 34 34 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 35 35 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 36 36 H 1.09002 * 109.45193 * 60.88225 * 13 12 11 37 37 H 1.09007 * 109.47344 * 200.79314 * 15 14 13 38 38 H 1.09005 * 109.47112 * 320.78729 * 15 14 13 39 39 H 1.09001 * 108.70386 * 335.72038 * 21 19 17 40 40 H 1.08994 * 108.71112 * 93.71902 * 21 19 17 41 41 H 1.08001 * 117.55678 * 197.51656 * 22 21 19 42 42 H 1.08000 * 118.35480 * 177.71106 * 23 22 21 43 43 H 1.09003 * 108.63643 * 132.29302 * 24 23 22 44 44 H 1.08991 * 108.63682 * 250.11607 * 24 23 22 45 45 H 1.09006 * 109.46097 * 178.23945 * 29 14 13 46 46 H 1.08996 * 109.46972 * 58.27256 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6257 -2.5575 -0.8924 11 6 0.3701 -2.5819 1.2479 12 6 -0.3475 -3.9343 1.2698 13 6 0.6932 -5.0576 1.2363 14 7 1.5099 -4.9349 0.0221 15 6 2.4268 -6.0746 -0.1131 16 7 1.7048 -7.2181 -0.6763 17 6 1.6137 -7.4502 -2.0000 18 8 2.2527 -6.9016 -2.8721 19 6 0.5477 -8.5406 -2.1987 20 1 0.7334 -9.1842 -3.0587 21 6 -0.7775 -7.7798 -2.2903 22 6 -1.9234 -8.5149 -1.6861 23 6 -1.8149 -9.5039 -0.8627 24 6 -0.5006 -10.0806 -0.4404 25 6 0.6751 -9.2515 -0.8415 26 1 1.5353 -9.9173 -0.9098 27 6 1.0740 -8.1399 0.0852 28 8 0.8685 -8.0800 1.2784 29 6 2.2443 -3.6634 0.0024 30 1 -0.4850 0.8400 0.0004 31 1 0.9911 -2.4845 2.1385 32 1 -0.3666 -1.7789 1.2280 33 1 -0.9435 -4.0153 2.1789 34 1 -0.9981 -4.0152 0.3991 35 1 0.1860 -6.0224 1.2368 36 1 1.3348 -4.9843 2.1144 37 1 3.2494 -5.8027 -0.7746 38 1 2.8218 -6.3414 0.8672 39 1 -0.6674 -6.8232 -1.7795 40 1 -0.9993 -7.5890 -3.3402 41 1 -2.9194 -8.1973 -1.9570 42 1 -2.7183 -9.9368 -0.4590 43 1 -0.4987 -10.1854 0.6446 44 1 -0.3962 -11.0709 -0.8834 45 1 2.8637 -3.6156 -0.8933 46 1 2.8786 -3.5966 0.8863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:31 Heat of formation + Delta-G solvation = -40.356857 kcal Electronic energy + Delta-G solvation = -28145.954512 eV Core-core repulsion = 24421.858877 eV Total energy + Delta-G solvation = -3724.095636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36632 -38.57965 -38.39306 -37.41856 -35.62127 -33.69865 -32.20064 -31.55521 -30.88132 -29.83576 -26.30421 -25.12687 -24.94077 -23.88526 -22.13283 -22.06551 -21.32970 -19.54658 -18.68805 -18.16592 -17.15009 -16.99629 -16.33051 -16.10623 -15.98942 -15.29183 -14.74668 -14.52727 -14.35623 -14.27576 -14.12270 -13.64254 -13.49141 -13.43774 -13.01994 -12.91711 -12.71835 -12.52422 -12.31229 -12.17220 -11.84794 -11.49018 -11.41517 -10.96618 -10.82510 -10.70565 -10.67303 -10.30502 -10.12582 -9.99280 -9.85655 -9.82118 -9.50447 -9.21059 -9.03607 -8.71360 -8.31852 -7.86775 -5.97631 -4.04021 1.50568 2.07584 2.37154 2.68255 3.30407 3.38466 3.42117 3.65046 4.00071 4.05288 4.34388 4.41880 4.53495 4.76649 4.82480 4.92700 5.01136 5.06740 5.18977 5.32638 5.37586 5.39212 5.48521 5.55181 5.60497 5.74888 5.78371 5.83628 5.84631 6.09931 6.24844 6.31790 6.37009 6.48902 6.68921 6.70282 6.72123 6.78869 6.91079 7.18330 7.26603 7.33733 7.53166 7.65875 7.76452 7.81080 8.06179 8.16198 8.46110 8.99806 9.60417 11.08362 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.003521 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.731081 B = 7949.290705 C = 8132.579328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.057 3.943 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.060 3.940 14 N -0.550 5.550 15 C 0.264 3.736 16 N -0.573 5.573 17 C 0.533 3.467 18 O -0.468 6.468 19 C -0.103 4.103 20 H 0.132 0.868 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.071 4.071 25 C -0.125 4.125 26 H 0.111 0.889 27 C 0.540 3.460 28 O -0.469 6.469 29 C 0.073 3.927 30 H 0.259 0.741 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 -21.935 -2.163 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.067 4.067 14 N -0.276 5.276 15 C 0.053 3.947 16 N -0.318 5.318 17 C 0.321 3.679 18 O -0.338 6.338 19 C -0.125 4.125 20 H 0.150 0.850 21 C -0.127 4.127 22 C -0.163 4.163 23 C -0.174 4.174 24 C -0.108 4.108 25 C -0.146 4.146 26 H 0.129 0.871 27 C 0.329 3.671 28 O -0.339 6.339 29 C -0.054 4.054 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.882 -21.419 -2.366 21.632 hybrid contribution 0.980 1.075 0.761 1.642 sum -0.902 -20.345 -1.605 20.428 Atomic orbital electron populations 1.69901 1.05853 1.26235 1.50661 1.24929 0.94825 0.98976 0.95069 0.86560 0.80128 0.83901 0.77532 1.19840 1.21031 1.21097 1.21159 0.92876 0.90548 1.50739 0.92716 1.18660 0.92528 0.90091 0.94942 0.94776 1.21664 1.00055 0.94736 0.98423 1.21686 0.97120 0.96386 1.00134 1.22216 0.95644 0.99482 0.89390 1.61703 1.24315 1.02306 1.39262 1.22138 0.91074 0.82906 0.98607 1.47441 1.49930 1.25444 1.08969 1.21549 0.81736 0.83188 0.81470 1.90767 1.45110 1.52247 1.45633 1.22668 0.95301 0.95928 0.98554 0.85038 1.20167 0.90526 0.98974 1.03026 1.21590 0.98887 0.97245 0.98566 1.21787 0.97980 0.98757 0.98916 1.19311 0.90464 0.98111 1.02914 1.21002 1.02197 0.97164 0.94219 0.87113 1.20534 0.75456 0.83450 0.87678 1.90742 1.51710 1.77776 1.13683 1.22320 0.96572 0.87376 0.99126 0.93102 0.95069 0.89024 0.93421 0.92374 0.91533 0.95528 0.88027 0.91744 0.89385 0.89300 0.87157 0.86910 0.89293 0.89432 0.91858 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 11.35 55.43 0.63 -24.81 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.15 8.57 -34.44 -0.30 -14.44 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.35 6.11 -26.58 -0.16 -2.52 16 13 C 0.06 1.13 5.22 -3.77 -0.02 1.11 16 14 N -0.55 -10.39 4.75 -238.49 -1.13 -11.52 16 15 C 0.26 4.16 5.53 -63.32 -0.35 3.81 16 16 N -0.57 -7.96 2.75 -117.49 -0.32 -8.28 16 17 C 0.53 7.12 6.72 -9.46 -0.06 7.06 16 18 O -0.47 -7.79 17.58 5.60 0.10 -7.69 16 19 C -0.10 -0.95 4.07 -89.79 -0.37 -1.32 16 20 H 0.13 0.88 8.14 -51.92 -0.42 0.45 16 21 C -0.09 -0.92 5.19 -28.68 -0.15 -1.06 16 22 C -0.14 -1.31 9.76 -36.36 -0.35 -1.67 16 23 C -0.16 -1.28 9.91 -36.05 -0.36 -1.63 16 24 C -0.07 -0.52 5.66 -30.21 -0.17 -0.69 16 25 C -0.12 -1.09 2.38 -93.47 -0.22 -1.31 16 26 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 27 C 0.54 6.91 6.86 -11.08 -0.08 6.83 16 28 O -0.47 -7.21 15.42 5.60 0.09 -7.12 16 29 C 0.07 1.55 4.62 -3.83 -0.02 1.53 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.22 5.40 -51.93 -0.28 0.94 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 1.58 7.39 -51.93 -0.38 1.19 16 38 H 0.06 0.97 7.80 -51.93 -0.40 0.57 16 39 H 0.09 1.18 7.44 -51.93 -0.39 0.79 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.09 0.72 7.80 -51.93 -0.40 0.31 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.34 7.91 -51.93 -0.41 0.93 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -31.29 359.31 -10.49 -41.78 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.20 Total: 0.09 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.04 Total: -4.20 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.83 Total: -44.61 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.18 Total: -14.82 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.29 -10.49 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.424 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds