Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00357 * 3 2 1 6 6 H 1.48497 * 109.46991 * 60.00415 * 3 2 1 7 7 C 1.37878 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50701 * 60.07456 * 9 7 2 11 11 C 1.53123 * 109.50215 * 299.99742 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.33526 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 N 1.46494 * 109.47405 * 80.78914 * 15 14 13 17 17 C 1.34702 * 123.06577 * 89.99873 * 16 15 14 18 18 O 1.21232 * 126.39113 * 11.88251 * 17 16 15 19 19 C 1.53780 * 107.21743 * 191.89873 * 17 16 15 20 20 H 1.09009 * 113.73179 * 211.39736 * 19 17 16 21 21 C 1.53077 * 104.80211 * 87.27412 * 19 17 16 22 22 C 1.48945 * 113.35844 * 214.71963 * 21 19 17 23 23 C 1.29147 * 124.88471 * 17.49475 * 22 21 19 24 24 C 1.49609 * 123.29470 * 357.69137 * 23 22 21 25 25 C 1.49344 * 113.68832 * 11.22285 * 24 23 22 26 26 H 1.08995 * 107.39527 * 205.15330 * 25 24 23 27 27 C 1.35180 * 123.07143 * 269.70945 * 16 15 14 28 28 O 1.21226 * 126.86014 * 9.76569 * 27 16 15 29 29 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 30 30 H 0.96996 * 120.00253 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.52319 * 302.27319 * 11 9 7 32 32 H 1.08995 * 109.52318 * 62.40000 * 11 9 7 33 33 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 34 34 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 35 35 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 36 36 H 1.09002 * 109.45193 * 60.88225 * 13 12 11 37 37 H 1.09007 * 109.47344 * 200.79314 * 15 14 13 38 38 H 1.09005 * 109.47112 * 320.78729 * 15 14 13 39 39 H 1.09001 * 108.70386 * 335.72038 * 21 19 17 40 40 H 1.08994 * 108.71112 * 93.71902 * 21 19 17 41 41 H 1.08001 * 117.55678 * 197.51656 * 22 21 19 42 42 H 1.08000 * 118.35480 * 177.71106 * 23 22 21 43 43 H 1.09003 * 108.63643 * 132.29302 * 24 23 22 44 44 H 1.08991 * 108.63682 * 250.11607 * 24 23 22 45 45 H 1.09006 * 109.46097 * 178.23945 * 29 14 13 46 46 H 1.08996 * 109.46972 * 58.27256 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6257 -2.5575 -0.8924 11 6 0.3701 -2.5819 1.2479 12 6 -0.3475 -3.9343 1.2698 13 6 0.6932 -5.0576 1.2363 14 7 1.5099 -4.9349 0.0221 15 6 2.4268 -6.0746 -0.1131 16 7 1.7048 -7.2181 -0.6763 17 6 1.6137 -7.4502 -2.0000 18 8 2.2527 -6.9016 -2.8721 19 6 0.5477 -8.5406 -2.1987 20 1 0.7334 -9.1842 -3.0587 21 6 -0.7775 -7.7798 -2.2903 22 6 -1.9234 -8.5149 -1.6861 23 6 -1.8149 -9.5039 -0.8627 24 6 -0.5006 -10.0806 -0.4404 25 6 0.6751 -9.2515 -0.8415 26 1 1.5353 -9.9173 -0.9098 27 6 1.0740 -8.1399 0.0852 28 8 0.8685 -8.0800 1.2784 29 6 2.2443 -3.6634 0.0024 30 1 -0.4850 0.8400 0.0004 31 1 0.9911 -2.4845 2.1385 32 1 -0.3666 -1.7789 1.2280 33 1 -0.9435 -4.0153 2.1789 34 1 -0.9981 -4.0152 0.3991 35 1 0.1860 -6.0224 1.2368 36 1 1.3348 -4.9843 2.1144 37 1 3.2494 -5.8027 -0.7746 38 1 2.8218 -6.3414 0.8672 39 1 -0.6674 -6.8232 -1.7795 40 1 -0.9993 -7.5890 -3.3402 41 1 -2.9194 -8.1973 -1.9570 42 1 -2.7183 -9.9368 -0.4590 43 1 -0.4987 -10.1854 0.6446 44 1 -0.3962 -11.0709 -0.8834 45 1 2.8637 -3.6156 -0.8933 46 1 2.8786 -3.5966 0.8863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = -59.419988 kcal Electronic energy + Delta-G solvation = -28146.781152 eV Core-core repulsion = 24421.858877 eV Total energy + Delta-G solvation = -3724.922275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.34238 -39.92011 -39.67254 -38.41161 -36.82210 -35.43283 -33.72263 -32.33463 -32.06190 -31.70304 -27.56301 -26.99462 -26.03516 -24.83887 -23.68862 -23.32338 -22.72353 -20.60550 -20.50625 -19.05400 -18.59543 -18.12549 -17.81234 -17.12604 -16.96635 -16.71559 -16.27303 -15.80038 -15.72707 -15.39690 -15.36059 -15.08494 -14.73307 -14.48669 -14.41095 -14.25058 -14.08022 -13.66934 -13.56445 -13.42920 -12.99546 -12.96058 -12.89111 -12.63458 -12.56698 -12.25475 -11.91468 -11.81569 -11.51267 -11.49605 -11.39006 -11.11883 -10.92447 -10.75660 -10.73893 -10.42718 -9.85255 -9.43017 -8.10874 -6.25476 0.48561 1.28919 1.39216 1.40893 1.45147 1.52353 1.68097 2.40772 2.78396 2.95305 3.15239 3.16429 3.32716 3.69465 3.80999 4.00047 4.06149 4.13772 4.15433 4.18547 4.24173 4.26374 4.35760 4.49739 4.52077 4.55709 4.60553 4.79357 4.81622 4.82542 4.87373 4.97203 5.00437 5.06317 5.07423 5.22469 5.26747 5.42030 5.59840 5.70496 5.74460 5.84975 6.01736 6.05087 6.06528 6.11817 6.26682 6.37147 6.73042 6.86203 7.42709 8.94235 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.003521 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.731081 B = 7949.290705 C = 8132.579328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.056 3.944 10 H -0.007 1.007 11 C -0.101 4.101 12 C -0.107 4.107 13 C 0.072 3.928 14 N -0.560 5.560 15 C 0.264 3.736 16 N -0.579 5.579 17 C 0.527 3.473 18 O -0.508 6.508 19 C -0.082 4.082 20 H 0.169 0.831 21 C -0.088 4.088 22 C -0.165 4.165 23 C -0.148 4.148 24 C -0.072 4.072 25 C -0.116 4.116 26 H 0.147 0.853 27 C 0.535 3.465 28 O -0.497 6.497 29 C 0.087 3.913 30 H 0.261 0.739 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.060 0.940 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -24.566 -2.087 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.012 0.988 11 C -0.140 4.140 12 C -0.145 4.145 13 C -0.056 4.056 14 N -0.286 5.286 15 C 0.053 3.947 16 N -0.323 5.323 17 C 0.318 3.682 18 O -0.380 6.380 19 C -0.103 4.103 20 H 0.187 0.813 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.166 4.166 24 C -0.109 4.109 25 C -0.136 4.136 26 H 0.165 0.835 27 C 0.326 3.674 28 O -0.370 6.370 29 C -0.040 4.040 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.632 -24.088 -2.289 24.251 hybrid contribution 0.866 1.880 0.743 2.199 sum -0.765 -22.208 -1.546 22.275 Atomic orbital electron populations 1.70042 1.07235 1.27080 1.51120 1.25730 0.95661 1.02402 0.94637 0.85530 0.79077 0.79582 0.77597 1.19087 1.20682 1.20506 1.21510 0.93077 0.91906 1.50962 0.92776 1.18560 0.92855 0.91254 0.93648 0.98842 1.21456 0.99169 0.95836 0.97511 1.21582 0.97334 0.94991 1.00605 1.22084 0.95126 0.98966 0.89380 1.61603 1.25094 1.02397 1.39533 1.22062 0.90773 0.82574 0.99317 1.47578 1.50021 1.24997 1.09699 1.22347 0.81660 0.83570 0.80652 1.90744 1.46795 1.53972 1.46489 1.22795 0.92498 0.94636 1.00396 0.81316 1.20112 0.91702 0.97613 1.03148 1.21564 0.98503 0.98207 1.00053 1.22073 0.99221 0.97853 0.97406 1.19446 0.89042 0.99354 1.03021 1.21111 1.04453 0.96074 0.92001 0.83518 1.21318 0.74439 0.83941 0.87720 1.90723 1.52721 1.78443 1.15071 1.21968 0.95470 0.87463 0.99099 0.93023 0.95495 0.92109 0.91371 0.93569 0.90549 0.95341 0.88106 0.90743 0.93356 0.88650 0.86882 0.85398 0.89512 0.85607 0.92180 0.95348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.08 11.35 21.45 0.24 -53.83 16 2 C 0.01 0.82 5.30 84.65 0.45 1.27 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -30.31 8.57 25.60 0.22 -30.09 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.06 2.93 2.26 -11.49 -0.03 2.90 16 10 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 11 C -0.10 -5.04 5.02 30.68 0.15 -4.89 16 12 C -0.11 -4.45 6.11 30.69 0.19 -4.26 16 13 C 0.07 2.70 5.22 86.37 0.45 3.15 16 14 N -0.56 -21.52 4.75 -908.44 -4.32 -25.84 16 15 C 0.26 8.31 5.53 170.81 0.95 9.26 16 16 N -0.58 -15.61 2.75 -762.26 -2.10 -17.71 16 17 C 0.53 13.63 6.72 88.68 0.60 14.22 16 18 O -0.51 -16.93 17.58 -2.88 -0.05 -16.98 16 19 C -0.08 -1.30 4.07 -10.26 -0.04 -1.34 16 20 H 0.17 1.50 8.14 -2.38 -0.02 1.48 16 21 C -0.09 -1.71 5.19 29.33 0.15 -1.55 16 22 C -0.17 -2.69 9.76 26.97 0.26 -2.42 16 23 C -0.15 -1.93 9.91 27.18 0.27 -1.66 16 24 C -0.07 -0.75 5.66 28.34 0.16 -0.59 16 25 C -0.12 -1.60 2.38 -12.64 -0.03 -1.63 16 26 H 0.15 1.11 8.10 -2.39 -0.02 1.09 16 27 C 0.53 12.70 6.86 87.41 0.60 13.30 16 28 O -0.50 -14.53 15.42 -2.86 -0.04 -14.57 16 29 C 0.09 3.83 4.62 86.33 0.40 4.23 16 30 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 3.40 6.15 -2.39 -0.01 3.38 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.76 5.40 -2.39 -0.01 2.74 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 3.17 7.39 -2.38 -0.02 3.15 16 38 H 0.07 2.20 7.80 -2.38 -0.02 2.18 16 39 H 0.05 1.32 7.44 -2.39 -0.02 1.30 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.09 1.06 7.80 -2.39 -0.02 1.04 16 44 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 2.63 7.91 -2.38 -0.02 2.61 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.98 359.31 1.47 -69.51 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.97 Total: 13.09 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.75 Total: -0.12 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -6.17 Total: -97.38 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.09 Total: -31.55 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.98 1.47 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds