Wall clock time and date at job start Tue Mar 31 2020 12:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 115.56221 * 2 1 4 4 C 1.53004 * 117.50335 * 214.30836 * 2 1 3 5 5 C 1.53000 * 60.00050 * 252.51237 * 4 2 1 6 6 C 1.52995 * 117.49882 * 252.48395 * 5 4 2 7 7 N 1.46499 * 117.49963 * 107.48685 * 5 4 2 8 8 C 1.34775 * 120.00224 * 57.42249 * 7 5 4 9 9 O 1.21589 * 119.99712 * 5.02008 * 8 7 5 10 10 N 1.34777 * 120.00525 * 185.01808 * 8 7 5 11 11 C 1.46496 * 120.00132 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47031 * 180.02562 * 11 10 8 13 13 C 1.38304 * 119.92711 * 269.72533 * 12 11 10 14 14 C 1.38109 * 120.06233 * 179.72444 * 13 12 11 15 15 C 1.38878 * 119.93438 * 0.57030 * 14 13 12 16 16 O 1.35744 * 120.07233 * 179.67893 * 15 14 13 17 17 C 1.34829 * 117.00164 * 174.28857 * 16 15 14 18 18 H 1.07998 * 119.99648 * 5.06149 * 17 16 15 19 19 C 1.38656 * 120.00010 * 185.05338 * 17 16 15 20 20 N 1.31563 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46561 * 90.00524 * 21 19 17 23 23 H 1.48503 * 109.47207 * 210.00157 * 21 19 17 24 24 H 1.48496 * 109.47361 * 330.00779 * 21 19 17 25 25 C 1.38877 * 119.85893 * 359.70675 * 15 14 13 26 26 C 1.38102 * 119.93201 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47619 * 274.31091 * 1 2 3 28 28 H 1.09000 * 109.46932 * 34.31619 * 1 2 3 29 29 H 1.09003 * 109.46673 * 154.31336 * 1 2 3 30 30 H 1.08999 * 109.47530 * 205.68800 * 3 2 1 31 31 H 1.08996 * 109.47224 * 325.68917 * 3 2 1 32 32 H 1.09005 * 109.47465 * 85.68468 * 3 2 1 33 33 H 1.08999 * 117.50047 * 145.02070 * 4 2 1 34 34 H 1.09005 * 117.51152 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.47681 * 273.96442 * 6 5 4 36 36 H 1.09003 * 109.47383 * 33.96617 * 6 5 4 37 37 H 1.09003 * 109.47456 * 153.96540 * 6 5 4 38 38 H 0.97006 * 120.00374 * 237.68715 * 7 5 4 39 39 H 0.96997 * 119.99810 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.47246 * 300.00575 * 11 10 8 41 41 H 1.09004 * 109.47081 * 60.00356 * 11 10 8 42 42 H 1.07995 * 119.96759 * 359.97438 * 13 12 11 43 43 H 1.08005 * 120.02807 * 180.27668 * 14 13 12 44 44 H 0.96996 * 119.99629 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.03405 * 180.02562 * 25 15 14 46 46 H 1.08006 * 119.96370 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2366 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 6 3.5490 -0.7764 1.4716 7 7 1.3961 -2.1122 1.4415 8 6 1.5721 -3.4255 1.1953 9 8 2.4864 -3.7933 0.4831 10 7 0.7347 -4.3312 1.7383 11 6 0.9257 -5.7587 1.4702 12 6 -0.1355 -6.5512 2.1890 13 6 0.0941 -7.0037 3.4756 14 6 -0.8788 -7.7254 4.1391 15 6 -2.0838 -8.0068 3.5087 16 8 -3.0394 -8.7215 4.1558 17 6 -4.2280 -8.8579 3.5341 18 1 -4.3594 -8.4789 2.5313 19 6 -5.2814 -9.4847 4.1821 20 7 -5.1213 -9.9460 5.4037 21 14 -6.9279 -9.6743 3.3204 22 1 -6.9503 -10.9572 2.5726 23 1 -8.0178 -9.6702 4.3291 24 1 -7.1244 -8.5466 2.3746 25 6 -2.3090 -7.5558 2.2146 26 6 -1.3348 -6.8290 1.5589 27 1 -0.3634 0.0772 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9262 -0.4455 30 1 3.1824 1.3084 -0.4454 31 1 1.5812 2.0742 -0.5792 32 1 2.2772 1.7414 1.0248 33 1 3.1716 -0.8752 -1.2682 34 1 1.6116 -1.8589 -1.2680 35 1 4.1528 -1.6779 1.5764 36 1 4.0958 -0.0394 0.8833 37 1 3.3339 -0.3665 2.4584 38 1 0.7103 -1.8231 2.0637 39 1 0.0055 -4.0378 2.3068 40 1 0.8506 -5.9402 0.3981 41 1 1.9104 -6.0660 1.8226 42 1 1.0334 -6.7891 3.9634 43 1 -0.7006 -8.0747 5.1454 44 1 -5.8581 -10.3849 5.8568 45 1 -3.2452 -7.7726 1.7218 46 1 -1.5096 -6.4777 0.5526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853652249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:59 Heat of formation + Delta-G solvation = -15.683591 kcal Electronic energy + Delta-G solvation = -25655.139625 eV Core-core repulsion = 21932.113902 eV Total energy + Delta-G solvation = -3723.025723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44940 -39.21978 -38.47058 -36.82162 -34.28130 -33.42321 -32.35508 -30.51811 -30.27048 -29.50283 -28.20615 -27.17905 -25.87017 -24.68740 -22.06750 -22.00100 -20.62028 -20.29474 -19.08703 -18.24211 -18.05090 -17.03144 -16.31231 -15.60282 -15.14905 -14.93255 -14.71331 -14.50172 -14.41109 -14.12875 -13.81903 -13.71652 -13.45769 -13.33302 -13.10843 -12.81486 -12.78668 -12.62997 -12.53814 -12.32394 -12.09874 -11.96896 -11.69452 -11.45044 -11.39159 -10.96681 -10.79387 -10.68946 -10.50064 -10.39920 -10.11316 -9.75734 -9.43447 -9.22088 -8.92113 -8.75120 -8.28908 -7.33701 -6.53871 -4.12776 2.01633 2.12559 2.75849 3.07916 3.08606 3.13431 3.28084 3.38868 3.89496 4.17353 4.33891 4.43285 4.53866 4.67845 4.73629 5.01126 5.15685 5.20359 5.24875 5.27883 5.41048 5.44887 5.48552 5.53540 5.57424 5.61484 5.63160 5.66862 5.71820 5.80726 5.82215 5.93802 6.00061 6.04182 6.11656 6.35038 6.53881 6.58539 6.63506 6.79906 6.89915 6.99680 7.15505 7.27527 7.34530 7.71020 7.90877 8.09002 8.69001 8.91474 9.59782 10.63640 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002189 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.277222 B =12790.007941 C =13486.327035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.148 4.148 5 C 0.124 3.876 6 C -0.121 4.121 7 N -0.720 5.720 8 C 0.703 3.297 9 O -0.590 6.590 10 N -0.739 5.739 11 C 0.199 3.801 12 C -0.214 4.214 13 C -0.054 4.054 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.396 0.604 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.128 0.872 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 19.515 -8.333 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.171 4.171 4 C -0.186 4.186 5 C 0.036 3.964 6 C -0.179 4.179 7 N -0.375 5.375 8 C 0.403 3.597 9 O -0.467 6.467 10 N -0.394 5.394 11 C 0.076 3.924 12 C -0.215 4.215 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.257 4.257 26 C -0.069 4.069 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.781 18.874 -8.598 23.853 hybrid contribution -1.620 0.006 0.156 1.627 sum 10.161 18.880 -8.442 23.043 Atomic orbital electron populations 1.21287 0.91742 1.02200 1.01839 1.22075 0.95342 0.91480 1.04065 1.21372 1.00053 0.93609 1.02027 1.23454 1.02216 0.99648 0.93282 1.20465 0.92641 0.91809 0.91486 1.21505 0.94511 1.01866 1.00040 1.44398 1.40108 1.03769 1.49185 1.16021 0.82499 0.80547 0.80620 1.90905 1.33745 1.79378 1.42703 1.45522 1.33097 1.06613 1.54181 1.19809 0.96814 0.76954 0.98805 1.19229 0.96904 1.08714 0.96655 1.20541 0.97396 0.95884 0.93425 1.20222 0.93493 1.06792 1.00995 1.19438 0.89845 0.89296 0.90854 1.83976 1.20533 1.59559 1.43539 1.21352 0.85775 1.39783 1.00021 0.88935 1.25323 0.99230 0.96115 0.95834 1.70038 1.32833 1.35148 1.11342 0.85694 0.79837 0.79147 0.78661 1.19788 1.20183 1.19151 1.21158 1.01505 1.06770 0.96222 1.20643 0.92317 0.95797 0.98129 0.92295 0.91982 0.92278 0.92173 0.91948 0.92010 0.88300 0.88518 0.91532 0.91368 0.92199 0.76924 0.76995 0.91866 0.91797 0.86959 0.86392 0.91882 0.85446 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.26 37.16 0.34 -0.49 16 2 C -0.13 -1.01 2.70 -154.51 -0.42 -1.43 16 3 C -0.11 -0.68 8.65 37.15 0.32 -0.36 16 4 C -0.15 -1.47 8.59 -26.73 -0.23 -1.70 16 5 C 0.12 1.20 2.36 -131.82 -0.31 0.89 16 6 C -0.12 -1.05 9.46 37.16 0.35 -0.70 16 7 N -0.72 -7.44 4.85 -52.42 -0.25 -7.70 16 8 C 0.70 9.58 8.41 -86.92 -0.73 8.85 16 9 O -0.59 -10.20 15.80 5.29 0.08 -10.12 16 10 N -0.74 -9.41 5.55 -66.42 -0.37 -9.78 16 11 C 0.20 2.84 5.80 -5.20 -0.03 2.81 16 12 C -0.21 -3.42 5.25 -104.58 -0.55 -3.97 16 13 C -0.05 -0.90 9.69 -39.60 -0.38 -1.29 16 14 C -0.20 -3.93 9.99 -39.39 -0.39 -4.33 16 15 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 16 O -0.17 -4.80 9.76 0.07 0.00 -4.80 16 17 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 18 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 21 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 25 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 29 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.06 0.34 7.23 -51.93 -0.38 -0.04 16 31 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.48 6.75 -51.93 -0.35 0.13 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 3.23 8.79 -40.82 -0.36 2.87 16 39 H 0.40 4.45 8.48 -40.82 -0.35 4.10 16 40 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -31.52 384.34 -8.85 -40.38 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.00 Total: 9.31 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.84 Total: -14.17 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.14 Total: -41.34 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.52 -8.85 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.692 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds