Wall clock time and date at job start Tue Mar 31 2020 12:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 115.56221 * 2 1 4 4 C 1.53004 * 117.50335 * 214.30836 * 2 1 3 5 5 C 1.53000 * 60.00050 * 252.51237 * 4 2 1 6 6 C 1.52995 * 117.49882 * 252.48395 * 5 4 2 7 7 N 1.46499 * 117.49963 * 107.48685 * 5 4 2 8 8 C 1.34775 * 120.00224 * 57.42249 * 7 5 4 9 9 O 1.21589 * 119.99712 * 5.02008 * 8 7 5 10 10 N 1.34777 * 120.00525 * 185.01808 * 8 7 5 11 11 C 1.46496 * 120.00132 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47031 * 180.02562 * 11 10 8 13 13 C 1.38304 * 119.92711 * 269.72533 * 12 11 10 14 14 C 1.38109 * 120.06233 * 179.72444 * 13 12 11 15 15 C 1.38878 * 119.93438 * 0.57030 * 14 13 12 16 16 O 1.35744 * 120.07233 * 179.67893 * 15 14 13 17 17 C 1.34829 * 117.00164 * 174.28857 * 16 15 14 18 18 H 1.07998 * 119.99648 * 5.06149 * 17 16 15 19 19 C 1.38656 * 120.00010 * 185.05338 * 17 16 15 20 20 N 1.31563 * 120.00017 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46561 * 90.00524 * 21 19 17 23 23 H 1.48503 * 109.47207 * 210.00157 * 21 19 17 24 24 H 1.48496 * 109.47361 * 330.00779 * 21 19 17 25 25 C 1.38877 * 119.85893 * 359.70675 * 15 14 13 26 26 C 1.38102 * 119.93201 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47619 * 274.31091 * 1 2 3 28 28 H 1.09000 * 109.46932 * 34.31619 * 1 2 3 29 29 H 1.09003 * 109.46673 * 154.31336 * 1 2 3 30 30 H 1.08999 * 109.47530 * 205.68800 * 3 2 1 31 31 H 1.08996 * 109.47224 * 325.68917 * 3 2 1 32 32 H 1.09005 * 109.47465 * 85.68468 * 3 2 1 33 33 H 1.08999 * 117.50047 * 145.02070 * 4 2 1 34 34 H 1.09005 * 117.51152 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.47681 * 273.96442 * 6 5 4 36 36 H 1.09003 * 109.47383 * 33.96617 * 6 5 4 37 37 H 1.09003 * 109.47456 * 153.96540 * 6 5 4 38 38 H 0.97006 * 120.00374 * 237.68715 * 7 5 4 39 39 H 0.96997 * 119.99810 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.47246 * 300.00575 * 11 10 8 41 41 H 1.09004 * 109.47081 * 60.00356 * 11 10 8 42 42 H 1.07995 * 119.96759 * 359.97438 * 13 12 11 43 43 H 1.08005 * 120.02807 * 180.27668 * 14 13 12 44 44 H 0.96996 * 119.99629 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.03405 * 180.02562 * 25 15 14 46 46 H 1.08006 * 119.96370 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2366 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 6 3.5490 -0.7764 1.4716 7 7 1.3961 -2.1122 1.4415 8 6 1.5721 -3.4255 1.1953 9 8 2.4864 -3.7933 0.4831 10 7 0.7347 -4.3312 1.7383 11 6 0.9257 -5.7587 1.4702 12 6 -0.1355 -6.5512 2.1890 13 6 0.0941 -7.0037 3.4756 14 6 -0.8788 -7.7254 4.1391 15 6 -2.0838 -8.0068 3.5087 16 8 -3.0394 -8.7215 4.1558 17 6 -4.2280 -8.8579 3.5341 18 1 -4.3594 -8.4789 2.5313 19 6 -5.2814 -9.4847 4.1821 20 7 -5.1213 -9.9460 5.4037 21 14 -6.9279 -9.6743 3.3204 22 1 -6.9503 -10.9572 2.5726 23 1 -8.0178 -9.6702 4.3291 24 1 -7.1244 -8.5466 2.3746 25 6 -2.3090 -7.5558 2.2146 26 6 -1.3348 -6.8290 1.5589 27 1 -0.3634 0.0772 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9262 -0.4455 30 1 3.1824 1.3084 -0.4454 31 1 1.5812 2.0742 -0.5792 32 1 2.2772 1.7414 1.0248 33 1 3.1716 -0.8752 -1.2682 34 1 1.6116 -1.8589 -1.2680 35 1 4.1528 -1.6779 1.5764 36 1 4.0958 -0.0394 0.8833 37 1 3.3339 -0.3665 2.4584 38 1 0.7103 -1.8231 2.0637 39 1 0.0055 -4.0378 2.3068 40 1 0.8506 -5.9402 0.3981 41 1 1.9104 -6.0660 1.8226 42 1 1.0334 -6.7891 3.9634 43 1 -0.7006 -8.0747 5.1454 44 1 -5.8581 -10.3849 5.8568 45 1 -3.2452 -7.7726 1.7218 46 1 -1.5096 -6.4777 0.5526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853652249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:57 Heat of formation + Delta-G solvation = -35.671377 kcal Electronic energy + Delta-G solvation = -25656.006360 eV Core-core repulsion = 21932.113902 eV Total energy + Delta-G solvation = -3723.892458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40805 -40.80416 -39.47046 -38.41562 -35.55906 -34.44079 -34.16694 -31.84947 -31.48762 -30.63338 -28.80127 -27.84874 -27.59761 -26.16997 -23.65132 -23.00333 -22.09900 -21.21133 -19.89320 -19.87802 -19.23778 -18.76700 -17.20508 -16.72488 -16.38910 -16.28521 -16.06204 -15.95016 -15.53856 -15.43650 -15.21065 -14.84999 -14.66849 -14.38859 -14.23421 -14.04902 -13.75958 -13.67769 -13.37948 -13.21722 -13.12320 -13.02544 -12.90838 -12.64121 -12.55520 -12.37336 -12.22923 -12.12029 -12.02059 -11.41037 -11.20795 -10.99851 -10.81156 -10.51358 -10.22370 -9.82583 -9.71261 -9.02491 -8.48714 -6.16948 0.51966 0.57085 1.35615 1.43527 1.52657 1.75829 2.16766 2.21190 2.67614 2.79767 3.11521 3.37947 3.47876 3.67456 3.75082 3.87928 3.96805 4.02973 4.16228 4.16922 4.46147 4.54412 4.56292 4.71550 4.77280 4.80380 4.80429 4.85198 4.88533 4.94152 5.03703 5.05800 5.06767 5.08161 5.13953 5.23569 5.25975 5.33820 5.47068 5.49178 5.53016 5.68375 5.72154 5.75226 6.00950 6.01938 6.15603 6.96049 7.13136 7.65051 7.75228 8.74021 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002189 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.277222 B =12790.007941 C =13486.327035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.166 4.166 5 C 0.107 3.893 6 C -0.116 4.116 7 N -0.707 5.707 8 C 0.702 3.298 9 O -0.627 6.627 10 N -0.732 5.732 11 C 0.206 3.794 12 C -0.181 4.181 13 C -0.043 4.043 14 C -0.204 4.204 15 C 0.123 3.877 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.243 4.243 26 C -0.045 4.045 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.120 0.880 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 22.403 -9.873 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.106 4.106 3 C -0.171 4.171 4 C -0.203 4.203 5 C 0.019 3.981 6 C -0.175 4.175 7 N -0.362 5.362 8 C 0.403 3.597 9 O -0.508 6.508 10 N -0.388 5.388 11 C 0.082 3.918 12 C -0.182 4.182 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.263 4.263 26 C -0.063 4.063 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.653 21.828 -10.149 27.195 hybrid contribution -1.541 -0.676 0.505 1.757 sum 11.112 21.152 -9.644 25.766 Atomic orbital electron populations 1.21329 0.91334 1.01991 1.02603 1.22159 0.95589 0.91719 1.01087 1.21424 1.00332 0.92298 1.03003 1.23439 1.02666 1.00728 0.93512 1.20758 0.93542 0.92556 0.91277 1.21482 0.93768 1.01233 1.00986 1.44283 1.40192 1.02804 1.48905 1.16111 0.82006 0.81428 0.80192 1.90886 1.35351 1.80167 1.44404 1.45259 1.33352 1.05895 1.54311 1.19677 0.96002 0.77503 0.98586 1.19482 0.96429 1.06364 0.95916 1.20874 0.97665 0.94053 0.93509 1.20451 0.93319 1.07257 1.01323 1.19986 0.90226 0.90423 0.92182 1.83947 1.21592 1.62639 1.45286 1.21826 0.86322 1.40121 1.00656 0.87924 1.26589 1.03244 0.95587 0.96589 1.70181 1.34273 1.37656 1.13515 0.84592 0.74372 0.79658 0.77651 1.18927 1.19644 1.17568 1.21238 1.02234 1.07247 0.95535 1.20923 0.91685 0.94504 0.99217 0.91250 0.90696 0.93799 0.91685 0.90885 0.90940 0.87794 0.90843 0.93946 0.89644 0.90980 0.75462 0.75856 0.91676 0.91341 0.83575 0.86639 0.91799 0.86176 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.26 71.98 0.67 -0.75 16 2 C -0.10 -1.38 2.70 -52.18 -0.14 -1.52 16 3 C -0.11 -0.98 8.65 71.98 0.62 -0.36 16 4 C -0.17 -3.09 8.59 30.60 0.26 -2.83 16 5 C 0.11 1.85 2.36 3.60 0.01 1.86 16 6 C -0.12 -1.79 9.46 71.98 0.68 -1.10 16 7 N -0.71 -13.12 4.85 -438.01 -2.12 -15.24 16 8 C 0.70 17.73 8.41 179.05 1.51 19.24 16 9 O -0.63 -20.91 15.80 -4.00 -0.06 -20.97 16 10 N -0.73 -16.55 5.55 -482.30 -2.68 -19.23 16 11 C 0.21 5.21 5.80 85.63 0.50 5.70 16 12 C -0.18 -5.25 5.25 -19.83 -0.10 -5.36 16 13 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 14 C -0.20 -8.21 9.99 22.39 0.22 -7.98 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.23 -13.36 9.76 -22.66 -0.22 -13.58 16 17 C -0.41 -23.42 9.49 67.92 0.64 -22.77 16 18 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 20 N -0.92 -55.38 13.67 21.61 0.30 -55.08 16 21 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.24 -10.02 9.17 22.39 0.21 -9.82 16 26 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.74 7.92 -2.39 -0.02 0.72 16 29 H 0.04 0.68 7.90 -2.39 -0.02 0.66 16 30 H 0.06 0.52 7.23 -2.39 -0.02 0.51 16 31 H 0.07 0.51 7.92 -2.39 -0.02 0.50 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.10 1.77 8.05 -2.39 -0.02 1.75 16 34 H 0.07 1.71 8.05 -2.38 -0.02 1.69 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.99 6.75 -2.39 -0.02 0.97 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.41 5.54 8.79 -92.70 -0.82 4.73 16 39 H 0.41 7.79 8.48 -92.71 -0.79 7.00 16 40 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 41 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 46 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -73.04 384.34 2.76 -70.28 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.60 Total: 32.74 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 6.12 Total: -22.81 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.51 Total: -89.55 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.28 Total: -34.55 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.04 2.76 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.608 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds