Wall clock time and date at job start Tue Mar 31 2020 12:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.55020 * 2 1 4 4 C 1.52997 * 117.49940 * 214.29136 * 2 1 3 5 5 C 1.52997 * 60.00067 * 252.50825 * 4 2 1 6 6 C 1.53009 * 117.49912 * 107.48488 * 5 4 2 7 7 N 1.46498 * 117.49989 * 252.50974 * 5 4 2 8 8 C 1.34776 * 119.99855 * 134.58902 * 7 5 4 9 9 O 1.21592 * 120.00292 * 5.17931 * 8 7 5 10 10 N 1.34773 * 119.99813 * 185.17684 * 8 7 5 11 11 C 1.46504 * 120.00001 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47279 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92618 * 269.73004 * 12 11 10 14 14 C 1.38110 * 120.06383 * 179.72284 * 13 12 11 15 15 C 1.38879 * 119.93080 * 0.52512 * 14 13 12 16 16 O 1.35747 * 120.06786 * 179.72587 * 15 14 13 17 17 C 1.34830 * 116.99956 * 174.53107 * 16 15 14 18 18 H 1.08004 * 119.99895 * 5.05092 * 17 16 15 19 19 C 1.38650 * 120.00373 * 185.05035 * 17 16 15 20 20 N 1.31553 * 120.00227 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99579 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47161 * 90.00066 * 21 19 17 23 23 H 1.48511 * 109.46845 * 209.99898 * 21 19 17 24 24 H 1.48500 * 109.47349 * 329.99544 * 21 19 17 25 25 C 1.38885 * 119.86116 * 359.74800 * 15 14 13 26 26 C 1.38095 * 119.93111 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.47133 * 274.33466 * 1 2 3 28 28 H 1.08997 * 109.46984 * 154.33266 * 1 2 3 29 29 H 1.09005 * 109.46739 * 34.33041 * 1 2 3 30 30 H 1.08994 * 109.47497 * 85.57969 * 3 2 1 31 31 H 1.09003 * 109.47398 * 205.58378 * 3 2 1 32 32 H 1.09005 * 109.46742 * 325.58081 * 3 2 1 33 33 H 1.09004 * 117.49627 * 359.97438 * 4 2 1 34 34 H 1.08998 * 117.50271 * 145.01850 * 4 2 1 35 35 H 1.09007 * 109.46706 * 346.39710 * 6 5 4 36 36 H 1.09004 * 109.46547 * 106.39094 * 6 5 4 37 37 H 1.08992 * 109.47384 * 226.39195 * 6 5 4 38 38 H 0.97000 * 120.00028 * 314.58624 * 7 5 4 39 39 H 0.97001 * 120.00131 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.47426 * 299.99845 * 11 10 8 41 41 H 1.09004 * 109.47171 * 60.00192 * 11 10 8 42 42 H 1.07991 * 119.97161 * 359.97438 * 13 12 11 43 43 H 1.07995 * 120.03040 * 180.26951 * 14 13 12 44 44 H 0.97007 * 120.00080 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.03322 * 180.02562 * 25 15 14 46 46 H 1.08004 * 119.96895 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7654 6 6 1.3588 -2.1556 1.4723 7 7 3.4933 -0.7900 1.4417 8 6 3.4941 0.0700 2.4793 9 8 2.4428 0.4986 2.9147 10 7 4.6602 0.4550 3.0345 11 6 4.6612 1.3903 4.1621 12 6 6.0806 1.6565 4.5929 13 6 6.6694 0.8604 5.5585 14 6 7.9720 1.0982 5.9512 15 6 8.6869 2.1448 5.3834 16 8 9.9655 2.3844 5.7714 17 6 10.6393 3.3411 5.1015 18 1 10.1346 3.9329 4.3522 19 6 11.9800 3.5652 5.3747 20 7 12.6372 4.4990 4.7215 21 14 12.8530 2.5411 6.6703 22 1 13.4401 1.3344 6.0345 23 1 13.9331 3.3475 7.2936 24 1 11.8797 2.1275 7.7129 25 6 8.0908 2.9458 4.4180 26 6 6.7900 2.6994 4.0254 27 1 -0.3633 0.0777 1.0247 28 1 -0.3633 -0.9262 -0.4451 29 1 -0.3633 0.8487 -0.5796 30 1 2.2752 1.7424 1.0245 31 1 3.1829 1.3085 -0.4438 32 1 1.5817 2.0738 -0.5809 33 1 1.6112 -1.8591 -1.2673 34 1 3.1715 -0.8756 -1.2680 35 1 0.6677 -2.5971 0.7541 36 1 1.9891 -2.9367 1.8975 37 1 0.7945 -1.6704 2.2685 38 1 4.3248 -1.1901 1.1427 39 1 5.4990 0.1134 2.6871 40 1 4.1926 2.3264 3.8582 41 1 4.1039 0.9581 4.9933 42 1 6.1116 0.0496 6.0028 43 1 8.4327 0.4736 6.7021 44 1 13.5754 4.6556 4.9124 45 1 8.6443 3.7601 3.9743 46 1 6.3259 3.3217 3.2745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853652250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:01 Heat of formation + Delta-G solvation = -12.235924 kcal Electronic energy + Delta-G solvation = -25897.697743 eV Core-core repulsion = 22174.821523 eV Total energy + Delta-G solvation = -3722.876221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51509 -39.36118 -38.43172 -36.97383 -34.32111 -33.46434 -32.46936 -30.54300 -30.35858 -29.62006 -28.16942 -27.02674 -26.02088 -24.51988 -22.19603 -21.63848 -20.97628 -20.59473 -18.78392 -18.29491 -17.97635 -17.35586 -16.30379 -15.68149 -15.19804 -15.01609 -14.78130 -14.54009 -14.20409 -14.02322 -13.91234 -13.88401 -13.40055 -13.32950 -13.10248 -12.75852 -12.66802 -12.61977 -12.35144 -12.28028 -12.23598 -12.02389 -11.95546 -11.47522 -11.31127 -10.95545 -10.84955 -10.77787 -10.43804 -10.23434 -10.13738 -9.82960 -9.49270 -9.11246 -8.96303 -8.77381 -8.38436 -7.49071 -6.50918 -4.17918 1.90970 2.02140 2.74218 3.16100 3.19761 3.24900 3.33970 3.39332 4.13355 4.15758 4.34702 4.42450 4.49803 4.67644 4.74149 4.88949 5.01044 5.14146 5.25991 5.37045 5.41478 5.43620 5.46576 5.54467 5.56369 5.59321 5.72206 5.74335 5.75414 5.81458 5.89209 5.97283 6.02433 6.07868 6.20184 6.24842 6.45068 6.51944 6.59234 6.67364 6.84245 6.98148 7.12531 7.18753 7.49296 7.69749 7.93308 8.06133 8.67128 8.83674 9.44426 10.56229 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.002190 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.286442 B =12779.518288 C =13053.277402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.117 4.117 4 C -0.172 4.172 5 C 0.125 3.875 6 C -0.119 4.119 7 N -0.720 5.720 8 C 0.705 3.295 9 O -0.586 6.586 10 N -0.740 5.740 11 C 0.198 3.802 12 C -0.205 4.205 13 C -0.056 4.056 14 C -0.196 4.196 15 C 0.166 3.834 16 O -0.213 6.213 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.051 4.051 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.396 0.604 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.134 0.866 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 -11.663 -9.067 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.174 4.174 4 C -0.210 4.210 5 C 0.036 3.964 6 C -0.178 4.178 7 N -0.376 5.376 8 C 0.406 3.594 9 O -0.464 6.464 10 N -0.395 5.395 11 C 0.075 3.925 12 C -0.207 4.207 13 C -0.074 4.074 14 C -0.215 4.215 15 C 0.113 3.887 16 O -0.117 6.117 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.070 4.070 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.886 -11.193 -8.486 24.347 hybrid contribution 1.532 -0.555 0.052 1.631 sum -18.354 -11.749 -8.434 23.367 Atomic orbital electron populations 1.21330 0.91738 1.01552 1.02337 1.21837 0.95081 0.91800 1.02255 1.21368 0.99224 0.93695 1.03116 1.23718 1.02884 1.01862 0.92496 1.20477 0.87072 0.99323 0.89490 1.21500 0.98602 0.96969 1.00684 1.44443 1.09079 1.49019 1.35010 1.15960 0.84486 0.79286 0.79683 1.90898 1.30445 1.60344 1.64706 1.45497 1.06985 1.50228 1.36820 1.19820 0.93548 0.91954 0.87166 1.19305 0.96036 1.01424 1.03886 1.20543 0.93602 0.97586 0.95704 1.20217 0.95162 1.00255 1.05858 1.19185 0.85057 0.92497 0.91922 1.83574 1.20761 1.53154 1.54236 1.20785 0.93558 1.11937 1.20411 0.87502 1.24489 0.95255 0.96485 0.97737 1.69643 1.10725 1.30650 1.40238 0.86174 0.79224 0.79829 0.81647 1.19819 1.20678 1.18318 1.21280 0.96230 1.03938 1.02899 1.20702 0.93469 0.95616 0.97240 0.91659 0.92555 0.92202 0.90801 0.93011 0.92516 0.87966 0.88492 0.91710 0.92176 0.91278 0.76947 0.77003 0.91719 0.91717 0.86780 0.86393 0.90906 0.84819 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 8.86 37.16 0.33 -0.59 16 2 C -0.11 -1.02 2.49 -154.51 -0.39 -1.41 16 3 C -0.12 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.17 -1.29 9.39 -26.73 -0.25 -1.54 16 5 C 0.12 1.17 2.18 -131.82 -0.29 0.88 16 6 C -0.12 -1.04 9.12 37.16 0.34 -0.70 16 7 N -0.72 -7.15 5.08 -52.41 -0.27 -7.42 16 8 C 0.71 9.10 7.27 -86.92 -0.63 8.47 16 9 O -0.59 -9.55 14.77 5.28 0.08 -9.48 16 10 N -0.74 -8.93 5.55 -66.41 -0.37 -9.30 16 11 C 0.20 2.67 5.80 -5.19 -0.03 2.64 16 12 C -0.21 -3.12 5.25 -104.57 -0.55 -3.67 16 13 C -0.06 -0.87 9.69 -39.60 -0.38 -1.25 16 14 C -0.20 -3.63 9.99 -39.39 -0.39 -4.02 16 15 C 0.17 3.64 6.65 -39.10 -0.26 3.38 16 16 O -0.21 -5.41 8.59 0.06 0.00 -5.41 16 17 C -0.39 -10.67 9.95 30.88 0.31 -10.37 16 18 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -24.65 13.96 55.48 0.77 -23.88 16 21 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.37 7.59 -51.93 -0.39 -0.02 16 29 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 30 H 0.07 0.98 5.93 -51.93 -0.31 0.68 16 31 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.06 0.54 7.93 -51.93 -0.41 0.12 16 33 H 0.10 0.61 7.99 -51.93 -0.41 0.20 16 34 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 3.03 8.85 -40.82 -0.36 2.67 16 39 H 0.40 4.21 8.48 -40.82 -0.35 3.87 16 40 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 44 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 46 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -30.26 380.09 -8.59 -38.85 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.96 Total: 8.29 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.71 Total: -13.58 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.14 Total: -40.60 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.26 -8.59 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.610 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds