Wall clock time and date at job start Tue Mar 31 2020 12:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.55020 * 2 1 4 4 C 1.52997 * 117.49940 * 214.29136 * 2 1 3 5 5 C 1.52997 * 60.00067 * 252.50825 * 4 2 1 6 6 C 1.53009 * 117.49912 * 107.48488 * 5 4 2 7 7 N 1.46498 * 117.49989 * 252.50974 * 5 4 2 8 8 C 1.34776 * 119.99855 * 134.58902 * 7 5 4 9 9 O 1.21592 * 120.00292 * 5.17931 * 8 7 5 10 10 N 1.34773 * 119.99813 * 185.17684 * 8 7 5 11 11 C 1.46504 * 120.00001 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47279 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92618 * 269.73004 * 12 11 10 14 14 C 1.38110 * 120.06383 * 179.72284 * 13 12 11 15 15 C 1.38879 * 119.93080 * 0.52512 * 14 13 12 16 16 O 1.35747 * 120.06786 * 179.72587 * 15 14 13 17 17 C 1.34830 * 116.99956 * 174.53107 * 16 15 14 18 18 H 1.08004 * 119.99895 * 5.05092 * 17 16 15 19 19 C 1.38650 * 120.00373 * 185.05035 * 17 16 15 20 20 N 1.31553 * 120.00227 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99579 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47161 * 90.00066 * 21 19 17 23 23 H 1.48511 * 109.46845 * 209.99898 * 21 19 17 24 24 H 1.48500 * 109.47349 * 329.99544 * 21 19 17 25 25 C 1.38885 * 119.86116 * 359.74800 * 15 14 13 26 26 C 1.38095 * 119.93111 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.47133 * 274.33466 * 1 2 3 28 28 H 1.08997 * 109.46984 * 154.33266 * 1 2 3 29 29 H 1.09005 * 109.46739 * 34.33041 * 1 2 3 30 30 H 1.08994 * 109.47497 * 85.57969 * 3 2 1 31 31 H 1.09003 * 109.47398 * 205.58378 * 3 2 1 32 32 H 1.09005 * 109.46742 * 325.58081 * 3 2 1 33 33 H 1.09004 * 117.49627 * 359.97438 * 4 2 1 34 34 H 1.08998 * 117.50271 * 145.01850 * 4 2 1 35 35 H 1.09007 * 109.46706 * 346.39710 * 6 5 4 36 36 H 1.09004 * 109.46547 * 106.39094 * 6 5 4 37 37 H 1.08992 * 109.47384 * 226.39195 * 6 5 4 38 38 H 0.97000 * 120.00028 * 314.58624 * 7 5 4 39 39 H 0.97001 * 120.00131 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.47426 * 299.99845 * 11 10 8 41 41 H 1.09004 * 109.47171 * 60.00192 * 11 10 8 42 42 H 1.07991 * 119.97161 * 359.97438 * 13 12 11 43 43 H 1.07995 * 120.03040 * 180.26951 * 14 13 12 44 44 H 0.97007 * 120.00080 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.03322 * 180.02562 * 25 15 14 46 46 H 1.08004 * 119.96895 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7654 6 6 1.3588 -2.1556 1.4723 7 7 3.4933 -0.7900 1.4417 8 6 3.4941 0.0700 2.4793 9 8 2.4428 0.4986 2.9147 10 7 4.6602 0.4550 3.0345 11 6 4.6612 1.3903 4.1621 12 6 6.0806 1.6565 4.5929 13 6 6.6694 0.8604 5.5585 14 6 7.9720 1.0982 5.9512 15 6 8.6869 2.1448 5.3834 16 8 9.9655 2.3844 5.7714 17 6 10.6393 3.3411 5.1015 18 1 10.1346 3.9329 4.3522 19 6 11.9800 3.5652 5.3747 20 7 12.6372 4.4990 4.7215 21 14 12.8530 2.5411 6.6703 22 1 13.4401 1.3344 6.0345 23 1 13.9331 3.3475 7.2936 24 1 11.8797 2.1275 7.7129 25 6 8.0908 2.9458 4.4180 26 6 6.7900 2.6994 4.0254 27 1 -0.3633 0.0777 1.0247 28 1 -0.3633 -0.9262 -0.4451 29 1 -0.3633 0.8487 -0.5796 30 1 2.2752 1.7424 1.0245 31 1 3.1829 1.3085 -0.4438 32 1 1.5817 2.0738 -0.5809 33 1 1.6112 -1.8591 -1.2673 34 1 3.1715 -0.8756 -1.2680 35 1 0.6677 -2.5971 0.7541 36 1 1.9891 -2.9367 1.8975 37 1 0.7945 -1.6704 2.2685 38 1 4.3248 -1.1901 1.1427 39 1 5.4990 0.1134 2.6871 40 1 4.1926 2.3264 3.8582 41 1 4.1039 0.9581 4.9933 42 1 6.1116 0.0496 6.0028 43 1 8.4327 0.4736 6.7021 44 1 13.5754 4.6556 4.9124 45 1 8.6443 3.7601 3.9743 46 1 6.3259 3.3217 3.2745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853652250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:00 Heat of formation + Delta-G solvation = -31.354154 kcal Electronic energy + Delta-G solvation = -25898.526772 eV Core-core repulsion = 22174.821523 eV Total energy + Delta-G solvation = -3723.705249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43408 -40.91088 -39.40631 -38.47852 -35.53000 -34.51446 -34.28182 -31.89024 -31.56566 -30.69748 -28.82249 -27.83451 -27.63950 -26.02271 -23.72562 -22.61954 -21.98734 -21.75534 -19.90470 -19.64276 -19.18747 -19.06516 -17.21288 -16.81580 -16.54600 -16.22783 -15.99630 -15.79665 -15.65785 -15.37628 -15.33160 -14.79656 -14.64273 -14.44769 -14.29425 -14.08349 -14.06499 -13.68055 -13.36604 -13.26462 -13.10062 -13.05502 -12.92065 -12.63271 -12.57371 -12.47629 -12.31727 -12.00806 -11.94334 -11.36126 -11.31174 -11.06296 -10.91349 -10.57012 -10.09631 -9.84769 -9.64992 -9.11101 -8.51496 -6.24586 0.46727 0.53777 1.32015 1.35101 1.51851 1.78972 2.25530 2.26992 2.70941 2.74380 3.01610 3.11490 3.39695 3.67153 3.78803 3.85692 3.98814 4.01379 4.13340 4.19901 4.44334 4.53527 4.55678 4.71984 4.75800 4.78392 4.81739 4.85440 4.88610 4.91844 4.95079 5.04444 5.06626 5.10165 5.21388 5.27772 5.32841 5.34899 5.44698 5.51692 5.55198 5.70498 5.74915 5.78092 5.87445 6.04593 6.18625 6.82608 7.16288 7.55481 7.69795 8.59742 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.002190 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.286442 B =12779.518288 C =13053.277402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.144 4.144 5 C 0.105 3.895 6 C -0.114 4.114 7 N -0.709 5.709 8 C 0.705 3.295 9 O -0.621 6.621 10 N -0.734 5.734 11 C 0.205 3.795 12 C -0.172 4.172 13 C -0.044 4.044 14 C -0.192 4.192 15 C 0.129 3.871 16 O -0.242 6.242 17 C -0.400 4.400 18 H 0.083 0.917 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.262 1.262 25 C -0.238 4.238 26 C -0.049 4.049 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.409 0.591 39 H 0.406 0.594 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.131 0.869 44 H 0.285 0.715 45 H 0.109 0.891 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 -14.512 -9.636 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.182 4.182 5 C 0.017 3.983 6 C -0.173 4.173 7 N -0.364 5.364 8 C 0.405 3.595 9 O -0.501 6.501 10 N -0.390 5.390 11 C 0.081 3.919 12 C -0.173 4.173 13 C -0.062 4.062 14 C -0.211 4.211 15 C 0.080 3.920 16 O -0.149 6.149 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.186 1.186 25 C -0.257 4.257 26 C -0.068 4.068 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.171 0.829 43 H 0.149 0.851 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.966 -14.082 -9.090 27.631 hybrid contribution 1.767 0.247 0.111 1.787 sum -20.200 -13.834 -8.979 26.078 Atomic orbital electron populations 1.21309 0.91068 1.02813 1.01449 1.21930 0.95780 0.91460 1.03794 1.21287 0.99664 0.94848 1.01186 1.23784 1.02930 1.00561 0.90888 1.20730 0.86989 0.99667 0.90871 1.21463 0.98682 0.96612 1.00525 1.44344 1.10153 1.47982 1.33961 1.16043 0.83898 0.79441 0.80072 1.90885 1.31691 1.61675 1.65897 1.45249 1.07367 1.49948 1.36465 1.19686 0.91780 0.92445 0.87952 1.19542 0.96380 0.99454 1.01957 1.20941 0.92460 0.97994 0.94840 1.20518 0.95956 0.99075 1.05516 1.19736 0.84481 0.94318 0.93502 1.83522 1.22396 1.53581 1.55378 1.20707 0.94094 1.12447 1.20347 0.89984 1.25292 0.95907 0.97743 0.99914 1.69728 1.11304 1.32709 1.42444 0.85217 0.78059 0.78512 0.78940 1.18962 1.19383 1.18632 1.21259 0.97647 1.03570 1.03236 1.20898 0.92065 0.96304 0.97507 0.93481 0.90566 0.91832 0.93841 0.92911 0.91868 0.85697 0.87839 0.89468 0.91980 0.93715 0.75473 0.75919 0.91954 0.90999 0.82937 0.85067 0.90536 0.87300 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.86 71.98 0.64 -0.96 16 2 C -0.13 -2.16 2.49 -52.18 -0.13 -2.29 16 3 C -0.11 -2.26 8.85 71.98 0.64 -1.63 16 4 C -0.14 -1.65 9.39 30.59 0.29 -1.36 16 5 C 0.11 1.72 2.18 3.61 0.01 1.73 16 6 C -0.11 -1.75 9.12 71.99 0.66 -1.09 16 7 N -0.71 -12.42 5.08 -438.00 -2.22 -14.65 16 8 C 0.71 16.82 7.27 179.06 1.30 18.12 16 9 O -0.62 -19.57 14.77 -4.00 -0.06 -19.63 16 10 N -0.73 -15.73 5.55 -482.28 -2.68 -18.41 16 11 C 0.20 4.92 5.80 85.63 0.50 5.42 16 12 C -0.17 -4.73 5.25 -19.83 -0.10 -4.84 16 13 C -0.04 -1.22 9.69 22.25 0.22 -1.01 16 14 C -0.19 -6.76 9.99 22.39 0.22 -6.53 16 15 C 0.13 5.73 6.65 22.58 0.15 5.88 16 16 O -0.24 -12.68 8.59 -22.71 -0.19 -12.87 16 17 C -0.40 -22.97 9.95 67.92 0.68 -22.29 16 18 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 19 C 0.01 0.58 5.49 84.83 0.47 1.04 16 20 N -0.92 -54.18 13.96 21.61 0.30 -53.88 16 21 Si 0.97 44.41 28.62 68.60 1.96 46.38 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 25 C -0.24 -9.89 9.17 22.39 0.21 -9.69 16 26 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.78 7.59 -2.39 -0.02 0.76 16 29 H 0.06 0.86 7.92 -2.38 -0.02 0.84 16 30 H 0.04 1.14 5.93 -2.39 -0.01 1.13 16 31 H 0.05 1.00 7.90 -2.39 -0.02 0.98 16 32 H 0.06 1.13 7.93 -2.38 -0.02 1.12 16 33 H 0.12 0.91 7.99 -2.38 -0.02 0.89 16 34 H 0.10 1.09 8.05 -2.39 -0.02 1.07 16 35 H 0.09 0.90 7.57 -2.38 -0.02 0.88 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.41 5.07 8.85 -92.71 -0.82 4.25 16 39 H 0.41 7.34 8.48 -92.71 -0.79 6.56 16 40 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 41 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 42 H 0.15 3.20 8.06 -2.92 -0.02 3.18 16 43 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 45 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 46 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.41 380.09 2.45 -66.96 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.60 Total: 26.96 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.94 Total: -20.87 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -4.60 Total: -86.93 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.25 Total: -32.50 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.96 Total: 46.38 kcal Total: -69.41 2.45 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.607 kcal (2) G-P(sol) polarization free energy of solvation -69.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds