Wall clock time and date at job start Tue Mar 31 2020 12:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00026 * 3 2 1 5 5 H 1.48496 * 109.46825 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.46772 * 150.00074 * 3 2 1 7 7 C 1.38820 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99616 * 197.36829 * 7 2 1 9 9 N 1.36930 * 119.99989 * 17.36473 * 7 2 1 10 10 C 1.46928 * 120.62935 * 207.68409 * 9 7 2 11 11 C 1.53187 * 108.77876 * 233.58974 * 10 9 7 12 12 C 1.53042 * 109.31355 * 305.36574 * 11 10 9 13 13 C 1.53001 * 109.46200 * 181.38389 * 12 11 10 14 14 N 1.46502 * 109.47154 * 174.99746 * 13 12 11 15 15 C 1.34773 * 120.00269 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99546 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00275 * 180.02562 * 15 14 13 18 18 H 1.08993 * 115.56121 * 34.31099 * 17 15 14 19 19 C 1.53000 * 117.49828 * 248.62292 * 17 15 14 20 20 C 1.52996 * 117.49747 * 180.02562 * 17 15 14 21 21 H 1.08999 * 117.49905 * 0.02562 * 20 17 15 22 22 C 1.50699 * 117.49764 * 215.00049 * 20 17 15 23 23 C 1.34513 * 125.78980 * 119.80748 * 22 20 17 24 24 C 1.41375 * 106.84559 * 179.89051 * 23 22 20 25 25 C 1.34521 * 106.83925 * 0.36937 * 24 23 22 26 26 O 1.34301 * 108.41702 * 359.77330 * 25 24 23 27 27 C 1.53040 * 109.53498 * 61.36386 * 12 11 10 28 28 C 1.46924 * 120.63659 * 27.66676 * 9 7 2 29 29 H 0.97000 * 119.99319 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58693 * 113.79818 * 10 9 7 31 31 H 1.09002 * 109.58862 * 353.37828 * 10 9 7 32 32 H 1.09002 * 109.50170 * 185.41525 * 11 10 9 33 33 H 1.08996 * 109.49673 * 65.31788 * 11 10 9 34 34 H 1.08997 * 109.45738 * 301.35869 * 12 11 10 35 35 H 1.09002 * 109.47070 * 55.00054 * 13 12 11 36 36 H 1.09000 * 109.47167 * 295.00110 * 13 12 11 37 37 H 0.97003 * 119.99924 * 0.02562 * 14 13 12 38 38 H 1.09001 * 117.49672 * 145.01983 * 19 17 15 39 39 H 1.09005 * 117.49763 * 0.02562 * 19 17 15 40 40 H 1.08004 * 126.57859 * 0.02562 * 23 22 20 41 41 H 1.07999 * 126.58380 * 180.16288 * 24 23 22 42 42 H 1.07991 * 125.78983 * 179.74975 * 25 24 23 43 43 H 1.08997 * 109.50096 * 58.58997 * 27 12 11 44 44 H 1.09006 * 109.49419 * 178.68557 * 27 12 11 45 45 H 1.09000 * 109.58392 * 246.20250 * 28 9 7 46 46 H 1.09001 * 109.58135 * 6.61960 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0534 -1.2238 0.2787 9 7 1.3723 -2.3609 -0.3550 10 6 1.8191 -3.6549 0.1786 11 6 2.0740 -4.6095 -0.9920 12 6 0.8183 -4.6888 -1.8632 13 6 1.0574 -5.6680 -3.0142 14 7 -0.1813 -5.8351 -3.7784 15 6 -0.2086 -6.6568 -4.8464 16 8 0.7923 -7.2583 -5.1744 17 6 -1.4826 -6.8283 -5.6328 18 1 -2.1117 -5.9414 -5.7083 19 6 -2.1827 -8.1866 -5.5563 20 6 -1.4492 -7.7754 -6.8339 21 1 -0.5059 -8.2748 -7.0550 22 6 -2.2880 -7.4103 -8.0315 23 6 -1.8273 -7.1817 -9.2744 24 6 -2.9498 -6.8762 -10.0777 25 6 -4.0287 -6.9283 -9.2758 26 8 -3.6217 -7.2522 -8.0376 27 6 0.5005 -3.3032 -2.4301 28 6 0.2277 -2.3338 -1.2758 29 1 -0.4849 0.8401 0.0004 30 1 1.0467 -4.0693 0.8266 31 1 2.7399 -3.5180 0.7457 32 1 2.3131 -5.6010 -0.6075 33 1 2.9078 -4.2393 -1.5884 34 1 -0.0208 -5.0353 -1.2600 35 1 1.3691 -6.6320 -2.6123 36 1 1.8375 -5.2773 -3.6675 37 1 -0.9816 -5.3538 -3.5163 38 1 -3.2724 -8.1932 -5.5814 39 1 -1.7220 -8.9560 -4.9367 40 1 -0.7976 -7.2256 -9.5973 41 1 -2.9424 -6.6423 -11.1320 42 1 -5.0488 -6.7410 -9.5766 43 1 1.3491 -2.9453 -3.0131 44 1 -0.3804 -3.3650 -3.0692 45 1 -0.6744 -2.6405 -0.7464 46 1 0.0985 -1.3252 -1.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863889774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:58 Heat of formation + Delta-G solvation = 15.615796 kcal Electronic energy + Delta-G solvation = -25861.723378 eV Core-core repulsion = 22140.054899 eV Total energy + Delta-G solvation = -3721.668479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.86797 -40.08851 -38.04182 -36.72926 -34.92277 -33.27039 -32.90078 -30.72519 -29.88702 -29.77399 -27.20547 -24.83339 -23.55561 -23.32317 -22.23165 -21.95959 -21.03439 -20.49687 -20.10123 -19.10265 -17.96908 -17.29043 -16.72840 -16.26642 -15.90753 -15.45221 -14.98407 -14.84858 -14.51297 -14.03016 -13.65691 -13.53628 -13.39108 -13.10139 -13.05306 -12.95150 -12.78378 -12.41475 -12.33742 -12.24213 -11.88026 -11.42126 -11.30853 -10.99870 -10.87582 -10.74243 -10.53428 -10.25234 -10.23351 -10.17359 -9.99963 -9.88773 -9.57032 -9.45633 -9.00853 -8.64026 -8.47781 -6.68860 -5.80154 -3.21923 1.35104 2.24685 2.46502 2.62522 3.13862 3.37277 3.44352 3.45316 3.57542 4.16268 4.34488 4.48895 4.49851 4.68263 4.77458 4.86846 4.99162 5.10342 5.23095 5.29958 5.34672 5.41205 5.49499 5.55609 5.58200 5.63657 5.73295 5.81398 5.85666 5.90224 6.04173 6.13907 6.20495 6.27452 6.40290 6.51259 6.56049 6.66055 6.74838 6.80523 6.85018 6.97212 7.34672 7.49460 7.63241 7.78821 8.17062 8.44094 9.20551 9.84141 10.40581 11.28371 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002285 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.595671 B =12252.724691 C =13157.716491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.146 3.854 11 C -0.125 4.125 12 C -0.091 4.091 13 C 0.124 3.876 14 N -0.717 5.717 15 C 0.542 3.458 16 O -0.545 6.545 17 C -0.175 4.175 18 H 0.128 0.872 19 C -0.137 4.137 20 C -0.049 4.049 21 H 0.148 0.852 22 C 0.017 3.983 23 C -0.200 4.200 24 C -0.213 4.213 25 C -0.042 4.042 26 O -0.175 6.175 27 C -0.135 4.135 28 C 0.170 3.830 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.403 0.597 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.203 0.797 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.017 0.983 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -16.122 -15.189 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.367 5.367 15 C 0.328 3.672 16 O -0.423 6.423 17 C -0.196 4.196 18 H 0.146 0.854 19 C -0.174 4.174 20 C -0.067 4.067 21 H 0.165 0.835 22 C -0.033 4.033 23 C -0.219 4.219 24 C -0.232 4.232 25 C -0.110 4.110 26 O -0.072 6.072 27 C -0.174 4.174 28 C 0.044 3.956 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.220 0.780 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.256 -16.415 -15.113 23.463 hybrid contribution 0.006 1.330 -0.221 1.348 sum -7.250 -15.085 -15.334 22.699 Atomic orbital electron populations 1.70038 1.05251 1.25460 1.54088 1.25036 0.95298 0.98420 1.01012 0.86288 0.79134 0.83665 0.77698 1.21465 1.21783 1.20429 1.19209 0.92728 0.84920 1.41204 0.91665 1.44061 1.35858 1.01410 1.50222 1.20887 0.97623 0.86865 0.92680 1.21986 0.96577 0.99243 0.98640 1.21312 0.99380 0.95275 0.94985 1.21589 0.85757 0.99404 0.93204 1.45990 1.14918 1.46138 1.29687 1.19463 0.88429 0.79024 0.80330 1.90695 1.35418 1.47591 1.68629 1.22406 0.98896 0.97215 1.01121 0.85408 1.23083 1.00360 0.95428 0.98557 1.20466 0.99257 1.02643 0.84318 0.83457 1.21347 0.80655 1.05290 0.96002 1.21577 1.00554 1.07197 0.92608 1.21858 0.92313 1.07775 1.01252 1.24036 1.00294 1.05152 0.81484 1.83971 1.22782 1.68311 1.32116 1.22258 1.00034 0.95265 0.99887 1.20773 0.88595 0.98330 0.87853 0.93673 0.96508 0.92722 0.92930 0.92056 0.91273 0.91883 0.91559 0.76165 0.87049 0.87183 0.83277 0.83359 0.78008 0.92507 0.93604 0.96524 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 2 C 0.00 0.02 4.91 -17.42 -0.09 -0.07 16 3 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 10 C 0.15 2.97 6.51 -3.71 -0.02 2.95 16 11 C -0.12 -2.06 5.36 -26.61 -0.14 -2.20 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.12 1.71 5.06 -4.04 -0.02 1.69 16 14 N -0.72 -8.82 5.27 -60.29 -0.32 -9.14 16 15 C 0.54 6.99 7.61 -10.99 -0.08 6.91 16 16 O -0.55 -8.87 16.26 5.55 0.09 -8.78 16 17 C -0.18 -1.75 5.89 -91.77 -0.54 -2.29 16 18 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.14 -1.15 9.87 -26.76 -0.26 -1.41 16 20 C -0.05 -0.47 5.75 -91.80 -0.53 -1.00 16 21 H 0.15 1.49 7.67 -51.93 -0.40 1.10 16 22 C 0.02 0.17 6.80 -35.63 -0.24 -0.07 16 23 C -0.20 -1.96 10.81 -39.71 -0.43 -2.39 16 24 C -0.21 -1.79 10.91 -39.70 -0.43 -2.22 16 25 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 26 O -0.18 -1.74 10.36 5.72 0.06 -1.68 16 27 C -0.14 -2.41 5.25 -26.61 -0.14 -2.55 16 28 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 4.28 7.65 -40.82 -0.31 3.96 16 38 H 0.11 0.82 7.97 -51.93 -0.41 0.41 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.20 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -32.10 377.08 -9.62 -41.72 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.27 Total: 3.33 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.94 Total: -7.30 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.21 Total: -49.57 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.15 Total: -10.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.10 -9.62 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863889774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.335 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds