Wall clock time and date at job start Tue Mar 31 2020 12:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00026 * 3 2 1 5 5 H 1.48496 * 109.46825 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.46772 * 150.00074 * 3 2 1 7 7 C 1.38820 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99616 * 197.36829 * 7 2 1 9 9 N 1.36930 * 119.99989 * 17.36473 * 7 2 1 10 10 C 1.46928 * 120.62935 * 207.68409 * 9 7 2 11 11 C 1.53187 * 108.77876 * 233.58974 * 10 9 7 12 12 C 1.53042 * 109.31355 * 305.36574 * 11 10 9 13 13 C 1.53001 * 109.46200 * 181.38389 * 12 11 10 14 14 N 1.46502 * 109.47154 * 174.99746 * 13 12 11 15 15 C 1.34773 * 120.00269 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99546 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00275 * 180.02562 * 15 14 13 18 18 H 1.08993 * 115.56121 * 34.31099 * 17 15 14 19 19 C 1.53000 * 117.49828 * 248.62292 * 17 15 14 20 20 C 1.52996 * 117.49747 * 180.02562 * 17 15 14 21 21 H 1.08999 * 117.49905 * 0.02562 * 20 17 15 22 22 C 1.50699 * 117.49764 * 215.00049 * 20 17 15 23 23 C 1.34513 * 125.78980 * 119.80748 * 22 20 17 24 24 C 1.41375 * 106.84559 * 179.89051 * 23 22 20 25 25 C 1.34521 * 106.83925 * 0.36937 * 24 23 22 26 26 O 1.34301 * 108.41702 * 359.77330 * 25 24 23 27 27 C 1.53040 * 109.53498 * 61.36386 * 12 11 10 28 28 C 1.46924 * 120.63659 * 27.66676 * 9 7 2 29 29 H 0.97000 * 119.99319 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58693 * 113.79818 * 10 9 7 31 31 H 1.09002 * 109.58862 * 353.37828 * 10 9 7 32 32 H 1.09002 * 109.50170 * 185.41525 * 11 10 9 33 33 H 1.08996 * 109.49673 * 65.31788 * 11 10 9 34 34 H 1.08997 * 109.45738 * 301.35869 * 12 11 10 35 35 H 1.09002 * 109.47070 * 55.00054 * 13 12 11 36 36 H 1.09000 * 109.47167 * 295.00110 * 13 12 11 37 37 H 0.97003 * 119.99924 * 0.02562 * 14 13 12 38 38 H 1.09001 * 117.49672 * 145.01983 * 19 17 15 39 39 H 1.09005 * 117.49763 * 0.02562 * 19 17 15 40 40 H 1.08004 * 126.57859 * 0.02562 * 23 22 20 41 41 H 1.07999 * 126.58380 * 180.16288 * 24 23 22 42 42 H 1.07991 * 125.78983 * 179.74975 * 25 24 23 43 43 H 1.08997 * 109.50096 * 58.58997 * 27 12 11 44 44 H 1.09006 * 109.49419 * 178.68557 * 27 12 11 45 45 H 1.09000 * 109.58392 * 246.20250 * 28 9 7 46 46 H 1.09001 * 109.58135 * 6.61960 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0534 -1.2238 0.2787 9 7 1.3723 -2.3609 -0.3550 10 6 1.8191 -3.6549 0.1786 11 6 2.0740 -4.6095 -0.9920 12 6 0.8183 -4.6888 -1.8632 13 6 1.0574 -5.6680 -3.0142 14 7 -0.1813 -5.8351 -3.7784 15 6 -0.2086 -6.6568 -4.8464 16 8 0.7923 -7.2583 -5.1744 17 6 -1.4826 -6.8283 -5.6328 18 1 -2.1117 -5.9414 -5.7083 19 6 -2.1827 -8.1866 -5.5563 20 6 -1.4492 -7.7754 -6.8339 21 1 -0.5059 -8.2748 -7.0550 22 6 -2.2880 -7.4103 -8.0315 23 6 -1.8273 -7.1817 -9.2744 24 6 -2.9498 -6.8762 -10.0777 25 6 -4.0287 -6.9283 -9.2758 26 8 -3.6217 -7.2522 -8.0376 27 6 0.5005 -3.3032 -2.4301 28 6 0.2277 -2.3338 -1.2758 29 1 -0.4849 0.8401 0.0004 30 1 1.0467 -4.0693 0.8266 31 1 2.7399 -3.5180 0.7457 32 1 2.3131 -5.6010 -0.6075 33 1 2.9078 -4.2393 -1.5884 34 1 -0.0208 -5.0353 -1.2600 35 1 1.3691 -6.6320 -2.6123 36 1 1.8375 -5.2773 -3.6675 37 1 -0.9816 -5.3538 -3.5163 38 1 -3.2724 -8.1932 -5.5814 39 1 -1.7220 -8.9560 -4.9367 40 1 -0.7976 -7.2256 -9.5973 41 1 -2.9424 -6.6423 -11.1320 42 1 -5.0488 -6.7410 -9.5766 43 1 1.3491 -2.9453 -3.0131 44 1 -0.3804 -3.3650 -3.0692 45 1 -0.6744 -2.6405 -0.7464 46 1 0.0985 -1.3252 -1.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863889774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:57 Heat of formation + Delta-G solvation = -2.974235 kcal Electronic energy + Delta-G solvation = -25862.529502 eV Core-core repulsion = 22140.054899 eV Total energy + Delta-G solvation = -3722.474604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.52397 -41.09915 -39.47607 -37.65879 -36.32234 -34.52103 -33.92538 -32.42868 -31.51524 -30.49184 -28.65741 -26.31418 -24.72018 -24.13288 -23.80634 -22.63422 -22.49608 -21.39815 -20.97581 -20.56580 -18.83781 -18.60697 -18.03850 -17.10191 -16.83278 -16.77548 -16.40802 -15.94144 -15.64040 -15.44449 -15.28565 -15.00110 -14.70532 -14.15189 -13.98641 -13.91415 -13.75794 -13.69021 -13.45550 -13.35508 -13.08154 -12.91135 -12.82881 -12.57820 -12.29055 -12.04752 -11.95564 -11.84027 -11.64224 -11.60212 -11.26144 -11.13163 -10.91870 -10.82850 -10.53285 -10.09037 -9.30363 -8.67351 -7.87518 -5.31670 0.67729 1.43208 1.45740 1.47477 1.55801 1.68226 1.95773 2.21338 2.51030 2.82034 3.26502 3.44952 3.58526 3.71602 3.74721 3.84981 3.96222 4.02206 4.08865 4.11442 4.17418 4.35882 4.53664 4.55165 4.63547 4.69061 4.74532 4.78646 4.83897 4.90565 4.93493 5.01951 5.04380 5.05545 5.17719 5.19990 5.25570 5.30067 5.41726 5.42595 5.56469 5.58521 5.66761 5.79757 6.19161 6.39968 6.51673 7.16091 7.18470 7.88470 8.38666 9.18469 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002285 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.595671 B =12252.724691 C =13157.716491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.078 4.078 13 C 0.135 3.865 14 N -0.711 5.711 15 C 0.542 3.458 16 O -0.582 6.582 17 C -0.178 4.178 18 H 0.140 0.860 19 C -0.118 4.118 20 C -0.054 4.054 21 H 0.138 0.862 22 C 0.000 4.000 23 C -0.217 4.217 24 C -0.228 4.228 25 C -0.038 4.038 26 O -0.185 6.185 27 C -0.121 4.121 28 C 0.175 3.825 29 H 0.249 0.751 30 H 0.017 0.983 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.413 0.587 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.239 0.761 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.000 1.000 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 -17.276 -16.040 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.097 4.097 13 C 0.012 3.988 14 N -0.362 5.362 15 C 0.330 3.670 16 O -0.463 6.463 17 C -0.199 4.199 18 H 0.157 0.843 19 C -0.155 4.155 20 C -0.072 4.072 21 H 0.156 0.844 22 C -0.050 4.050 23 C -0.236 4.236 24 C -0.247 4.247 25 C -0.105 4.105 26 O -0.082 6.082 27 C -0.160 4.160 28 C 0.050 3.950 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.170 0.830 41 H 0.185 0.815 42 H 0.255 0.745 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.019 0.981 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.941 -17.587 -15.959 25.041 hybrid contribution 0.205 1.658 0.040 1.671 sum -7.735 -15.929 -15.919 23.811 Atomic orbital electron populations 1.70179 1.06520 1.25750 1.55557 1.25756 0.96073 1.01362 1.01507 0.85313 0.78169 0.79785 0.77488 1.21369 1.22098 1.19426 1.19514 0.92927 0.86284 1.40419 0.91822 1.44356 1.36035 1.02227 1.51047 1.21057 0.97289 0.85887 0.94256 1.21860 0.96795 0.99689 0.97145 1.21161 0.99175 0.93978 0.95407 1.21330 0.86120 0.99022 0.92345 1.45922 1.14792 1.46064 1.29444 1.19882 0.88862 0.78184 0.80110 1.90681 1.36953 1.49045 1.69578 1.22342 0.97883 0.98501 1.01137 0.84254 1.23169 1.01017 0.94145 0.97186 1.20396 0.99316 1.02775 0.84725 0.84409 1.21397 0.81027 1.06367 0.96192 1.21860 1.01333 1.07281 0.93124 1.22173 0.92034 1.08192 1.02329 1.24809 1.01750 1.03357 0.80544 1.83961 1.22513 1.68559 1.33187 1.22043 1.00600 0.95390 0.97954 1.20605 0.87782 0.97660 0.88980 0.94147 0.96458 0.92970 0.89667 0.92774 0.90336 0.91042 0.92778 0.74988 0.85597 0.86699 0.83048 0.81525 0.74453 0.93789 0.91146 0.98146 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 11.19 21.66 0.24 -54.75 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 3 Si 0.96 45.05 29.59 68.60 2.03 47.08 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.26 -14.39 9.59 84.04 0.81 -13.58 16 8 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -30.38 2.99 -699.09 -2.09 -32.47 16 10 C 0.14 5.62 6.51 86.36 0.56 6.18 16 11 C -0.12 -3.59 5.36 30.67 0.16 -3.43 16 12 C -0.08 -2.25 2.19 -10.77 -0.02 -2.28 16 13 C 0.14 3.46 5.06 86.38 0.44 3.90 16 14 N -0.71 -16.02 5.27 -463.05 -2.44 -18.46 16 15 C 0.54 13.21 7.61 87.66 0.67 13.88 16 16 O -0.58 -18.47 16.26 -3.06 -0.05 -18.52 16 17 C -0.18 -3.27 5.89 -11.54 -0.07 -3.33 16 18 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 19 C -0.12 -1.75 9.87 30.58 0.30 -1.45 16 20 C -0.05 -1.00 5.75 -11.56 -0.07 -1.07 16 21 H 0.14 2.81 7.67 -2.39 -0.02 2.79 16 22 C 0.00 0.00 6.80 24.83 0.17 0.17 16 23 C -0.22 -4.10 10.81 22.19 0.24 -3.86 16 24 C -0.23 -3.47 10.91 22.19 0.24 -3.23 16 25 C -0.04 -0.51 12.09 66.97 0.81 0.30 16 26 O -0.19 -3.34 10.36 -2.46 -0.03 -3.37 16 27 C -0.12 -4.20 5.25 30.67 0.16 -4.04 16 28 C 0.18 8.18 5.31 86.36 0.46 8.64 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 7.72 7.65 -92.71 -0.71 7.01 16 38 H 0.13 1.53 7.97 -2.39 -0.02 1.51 16 39 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.24 1.10 8.06 -2.91 -0.02 1.07 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 2.08 7.15 -2.38 -0.02 2.07 16 45 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16 Total: -1.00 -70.51 377.08 3.21 -67.30 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.27 Total: 18.86 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.28 Total: -5.68 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.29 Total: -105.69 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.08 Total: -21.89 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -70.51 3.21 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863889774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.330 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds