Wall clock time and date at job start Tue Mar 31 2020 13:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00186 * 2 1 4 4 C 1.38211 * 120.00423 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99680 * 359.95300 * 4 3 2 6 6 N 1.48025 * 119.99745 * 180.02562 * 5 4 3 7 7 O 1.21795 * 120.00295 * 6.42844 * 6 5 4 8 8 O 1.21798 * 119.99436 * 186.43377 * 6 5 4 9 9 C 1.38211 * 119.99905 * 359.79764 * 5 4 3 10 10 C 1.50705 * 119.99933 * 180.24791 * 9 5 4 11 11 C 1.38213 * 120.00201 * 179.97438 * 2 1 3 12 12 C 1.50703 * 119.99690 * 359.97438 * 11 2 1 13 13 N 1.46901 * 109.46937 * 81.69863 * 12 11 2 14 14 C 1.46907 * 110.99906 * 193.96079 * 13 12 11 15 15 C 1.50702 * 109.46718 * 158.68523 * 14 13 12 16 16 H 1.07995 * 120.00367 * 0.95526 * 15 14 13 17 17 C 1.37885 * 119.99481 * 180.95818 * 15 14 13 18 18 N 1.31510 * 120.00088 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99791 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47360 * 119.99544 * 19 17 15 22 22 H 1.48497 * 109.46867 * 239.99481 * 19 17 15 23 23 C 1.46895 * 111.00225 * 70.00308 * 13 12 11 24 24 C 1.53003 * 109.47512 * 200.06673 * 23 13 12 25 25 C 1.52993 * 117.50307 * 245.39148 * 24 23 13 26 26 C 1.52995 * 117.50311 * 176.72736 * 24 23 13 27 27 H 1.09003 * 109.46796 * 270.01871 * 1 2 3 28 28 H 1.08999 * 109.47395 * 30.01642 * 1 2 3 29 29 H 1.09001 * 109.47458 * 150.02334 * 1 2 3 30 30 H 1.08006 * 120.00157 * 359.97438 * 3 2 1 31 31 H 1.08007 * 120.00283 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47003 * 277.20067 * 10 9 5 33 33 H 1.09002 * 109.47165 * 37.20330 * 10 9 5 34 34 H 1.08998 * 109.46961 * 157.19904 * 10 9 5 35 35 H 1.09001 * 109.47461 * 321.69645 * 12 11 2 36 36 H 1.09002 * 109.47345 * 201.69409 * 12 11 2 37 37 H 1.08998 * 109.46738 * 278.68126 * 14 13 12 38 38 H 1.08994 * 109.46947 * 38.68686 * 14 13 12 39 39 H 0.97002 * 120.00003 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47017 * 80.07357 * 23 13 12 41 41 H 1.08997 * 109.47454 * 320.07088 * 23 13 12 42 42 H 1.09004 * 115.54358 * 31.05275 * 24 23 13 43 43 H 1.09000 * 117.49788 * 359.97438 * 25 24 23 44 44 H 1.09000 * 117.50405 * 145.01817 * 25 24 23 45 45 H 1.09001 * 117.49901 * 214.98255 * 26 24 23 46 46 H 1.09003 * 117.49943 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 7 5.7519 0.0000 -0.0001 7 8 6.3609 1.0482 0.1176 8 8 6.3608 -1.0483 -0.1179 9 6 3.5806 -1.1970 0.0051 10 6 4.3341 -2.5021 0.0113 11 6 2.1981 -1.1969 0.0005 12 6 1.4446 -2.5021 0.0017 13 7 1.0260 -2.8270 -1.3684 14 6 0.0207 -3.8982 -1.3717 15 6 -0.7552 -3.8548 -2.6629 16 1 -0.5144 -3.1163 -3.4131 17 6 -1.7727 -4.7581 -2.8864 18 7 -2.0657 -5.6578 -1.9730 19 14 -2.7340 -4.7049 -4.4871 20 1 -2.2122 -3.6083 -5.3417 21 1 -2.5848 -6.0004 -5.1975 22 1 -4.1697 -4.4634 -4.1944 23 6 2.1818 -3.1871 -2.2005 24 6 1.8151 -3.0311 -3.6778 25 6 1.7800 -4.2981 -4.5346 26 6 2.9155 -3.2866 -4.7096 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 4.6276 -2.7570 -1.0071 33 1 5.2245 -2.4047 0.6325 34 1 3.6952 -3.2886 0.4129 35 1 0.5647 -2.4131 0.6390 36 1 2.0899 -3.2939 0.3819 37 1 0.5182 -4.8636 -1.2790 38 1 -0.6614 -3.7588 -0.5331 39 1 -2.7812 -6.2935 -2.1303 40 1 2.4631 -4.2216 -2.0034 41 1 3.0192 -2.5312 -1.9628 42 1 1.0864 -2.2519 -3.9014 43 1 2.0185 -5.2428 -4.0461 44 1 1.0286 -4.3523 -5.3223 45 1 2.9106 -2.6758 -5.6124 46 1 3.9006 -3.5663 -4.3361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876691406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:57 Heat of formation + Delta-G solvation = 41.984521 kcal Electronic energy + Delta-G solvation = -27816.215448 eV Core-core repulsion = 24095.690403 eV Total energy + Delta-G solvation = -3720.525046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.29906 -41.22191 -39.08417 -37.73693 -36.87072 -34.94492 -34.81715 -33.43488 -29.70567 -29.52643 -29.08191 -27.71503 -25.90050 -25.62783 -23.20294 -23.06023 -22.35995 -21.88477 -21.15349 -19.68808 -19.59591 -18.64402 -18.30479 -17.42186 -16.86784 -16.36748 -16.29345 -16.26146 -15.59073 -15.28397 -14.78997 -14.71118 -14.41245 -14.16194 -14.14790 -14.01498 -13.60421 -13.34272 -13.06734 -13.00978 -12.90404 -12.77785 -12.65639 -12.49776 -12.35277 -12.26601 -12.20691 -12.16462 -12.10382 -11.72078 -11.63869 -11.24106 -10.94213 -10.62285 -10.39732 -10.11676 -9.97718 -9.03875 -8.09610 -6.12806 -1.13893 -0.00997 0.35484 0.44524 1.40130 1.43859 1.53298 2.24574 2.45989 3.03063 3.23092 3.26514 3.41511 3.44275 3.66278 3.76133 3.89735 4.01033 4.12087 4.16918 4.31532 4.37055 4.42168 4.51873 4.52935 4.62300 4.67679 4.67788 4.79263 4.82289 4.83642 4.86991 4.87427 5.04450 5.06242 5.13632 5.19044 5.23878 5.30940 5.33907 5.41027 5.47658 5.51689 5.66718 5.81154 6.15877 6.36807 6.58651 6.62278 7.01199 7.54073 9.01595 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.004032 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.554768 B = 6943.178106 C = 7659.891605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.002 3.998 3 C -0.119 4.119 4 C -0.048 4.048 5 C -0.076 4.076 6 N 0.039 4.961 7 O -0.186 6.186 8 O -0.184 6.184 9 C -0.012 4.012 10 C -0.137 4.137 11 C -0.084 4.084 12 C 0.087 3.913 13 N -0.523 5.523 14 C 0.211 3.789 15 C -0.482 4.482 16 H 0.072 0.928 17 C 0.006 3.994 18 N -0.939 5.939 19 Si 0.945 3.055 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.285 1.285 23 C 0.098 3.902 24 C -0.125 4.125 25 C -0.172 4.172 26 C -0.173 4.173 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.046 0.954 37 H -0.037 1.037 38 H 0.008 0.992 39 H 0.258 0.742 40 H 0.016 0.984 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.743 12.946 3.804 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.001 3.999 3 C -0.137 4.137 4 C -0.067 4.067 5 C -0.160 4.160 6 N 0.550 4.450 7 O -0.397 6.397 8 O -0.394 6.394 9 C -0.014 4.014 10 C -0.193 4.193 11 C -0.086 4.086 12 C -0.041 4.041 13 N -0.246 5.246 14 C 0.085 3.915 15 C -0.521 4.521 16 H 0.090 0.910 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.772 3.228 20 H -0.187 1.187 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.030 4.030 24 C -0.144 4.144 25 C -0.209 4.209 26 C -0.210 4.210 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.198 0.802 31 H 0.186 0.814 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.064 0.936 37 H -0.020 1.020 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.121 0.879 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.739 13.209 3.633 15.734 hybrid contribution 0.031 -1.476 -0.365 1.521 sum 7.770 11.733 3.268 14.447 Atomic orbital electron populations 1.21073 0.88750 1.04959 1.03798 1.20495 0.98170 0.91900 0.89336 1.21406 0.91849 0.99470 1.00952 1.21266 0.95206 0.96573 0.93644 1.21001 0.77646 0.97434 1.19871 1.43795 1.04388 0.99894 0.96915 1.94480 1.69784 1.21278 1.54198 1.94466 1.70204 1.20798 1.53927 1.19706 0.93702 0.94375 0.93642 1.21453 1.00677 0.92812 1.04309 1.19566 0.90814 0.96246 1.01957 1.21121 0.98677 0.92493 0.91778 1.62047 1.11488 1.42739 1.08359 1.19468 0.89151 0.86052 0.96831 1.21501 1.14172 1.14252 1.02174 0.90985 1.25633 0.98622 0.95617 0.99249 1.70070 1.32006 1.20198 1.35885 0.85684 0.78546 0.77774 0.80765 1.18723 1.21451 1.21143 1.21645 0.92300 0.97290 0.91732 1.22031 1.00743 0.99886 0.91745 1.22717 1.01075 0.94042 1.03075 1.23122 0.94021 1.02922 1.00955 0.88831 0.88963 0.90954 0.80161 0.81411 0.89485 0.88735 0.90279 0.89473 0.93623 1.01971 0.97378 0.93334 0.96595 0.90493 0.88853 0.90664 0.90329 0.87931 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.24 71.24 0.66 -2.00 16 2 C 0.00 0.04 5.88 -19.87 -0.12 -0.08 16 3 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 4 C -0.05 -0.93 9.56 22.27 0.21 -0.72 16 5 C -0.08 -1.90 6.83 36.37 0.25 -1.66 16 6 N 0.04 1.10 4.45 -46.46 -0.21 0.90 16 7 O -0.19 -5.34 18.47 18.89 0.35 -5.00 16 8 O -0.18 -5.49 15.38 18.89 0.29 -5.20 16 9 C -0.01 -0.32 5.08 -19.87 -0.10 -0.42 16 10 C -0.14 -3.44 7.24 71.24 0.52 -2.92 16 11 C -0.08 -2.19 4.84 -19.87 -0.10 -2.29 16 12 C 0.09 2.64 3.99 85.56 0.34 2.99 16 13 N -0.52 -19.37 3.85 -905.36 -3.49 -22.86 16 14 C 0.21 9.99 4.78 85.56 0.41 10.39 16 15 C -0.48 -24.52 7.62 25.60 0.20 -24.32 16 16 H 0.07 3.60 5.50 -2.91 -0.02 3.59 16 17 C 0.01 0.30 5.46 84.66 0.46 0.76 16 18 N -0.94 -53.93 13.29 21.45 0.28 -53.64 16 19 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 C 0.10 3.43 4.80 86.31 0.41 3.84 16 24 C -0.13 -4.44 3.92 -10.80 -0.04 -4.48 16 25 C -0.17 -6.15 9.50 30.62 0.29 -5.86 16 26 C -0.17 -5.03 10.25 30.62 0.31 -4.72 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 29 H 0.07 2.03 6.41 -2.39 -0.02 2.01 16 30 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.17 2.57 7.63 -2.91 -0.02 2.55 16 32 H 0.09 2.23 6.98 -2.39 -0.02 2.21 16 33 H 0.09 2.36 5.90 -2.39 -0.01 2.34 16 34 H 0.08 1.94 5.59 -2.39 -0.01 1.93 16 35 H 0.09 2.64 6.76 -2.39 -0.02 2.62 16 36 H 0.05 1.38 5.50 -2.39 -0.01 1.37 16 37 H -0.04 -1.99 7.69 -2.39 -0.02 -2.01 16 38 H 0.01 0.41 7.64 -2.39 -0.02 0.40 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.02 0.60 7.44 -2.39 -0.02 0.58 16 41 H 0.08 2.41 4.10 -2.39 -0.01 2.40 16 42 H 0.09 3.60 7.03 -2.38 -0.02 3.59 16 43 H 0.07 2.84 8.04 -2.39 -0.02 2.82 16 44 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -60.98 364.22 4.18 -56.80 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.00 Total: 17.58 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.92 Total: -33.26 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -3.41 Total: -75.61 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.64 Total: -10.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.98 4.18 -56.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.783 kcal (2) G-P(sol) polarization free energy of solvation -60.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds