Wall clock time and date at job start Tue Mar 31 2020 13:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38263 * 120.00202 * 2 1 4 4 C 1.38203 * 120.00413 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00213 * 0.25834 * 4 3 2 6 6 N 1.48017 * 120.00655 * 179.72399 * 5 4 3 7 7 O 1.21800 * 119.99405 * 6.57092 * 6 5 4 8 8 O 1.21795 * 120.00659 * 186.57011 * 6 5 4 9 9 C 1.38217 * 119.99509 * 359.46697 * 5 4 3 10 10 C 1.50699 * 120.00101 * 180.27716 * 9 5 4 11 11 C 1.38217 * 120.00181 * 180.02562 * 2 1 3 12 12 C 1.50699 * 119.99884 * 359.97438 * 11 2 1 13 13 N 1.46898 * 109.47139 * 90.00331 * 12 11 2 14 14 C 1.46847 * 110.99565 * 294.20898 * 13 12 11 15 15 C 1.53041 * 109.52010 * 174.16141 * 14 13 12 16 16 C 1.53116 * 109.27804 * 59.17777 * 15 14 13 17 17 C 1.50705 * 109.57462 * 182.40621 * 16 15 14 18 18 H 1.08007 * 119.99699 * 119.71537 * 17 16 15 19 19 C 1.37877 * 120.00175 * 299.71549 * 17 16 15 20 20 N 1.31516 * 119.99875 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99884 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47004 * 90.00066 * 21 19 17 23 23 H 1.48504 * 109.47075 * 209.99748 * 21 19 17 24 24 H 1.48493 * 109.47572 * 329.99878 * 21 19 17 25 25 C 1.53110 * 109.16344 * 302.34398 * 16 15 14 26 26 C 1.46840 * 111.00130 * 169.99852 * 13 12 11 27 27 H 1.08998 * 109.46835 * 90.00467 * 1 2 3 28 28 H 1.09003 * 109.47029 * 209.99472 * 1 2 3 29 29 H 1.08992 * 109.47357 * 329.99722 * 1 2 3 30 30 H 1.07998 * 119.99228 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00401 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47222 * 276.72168 * 10 9 5 33 33 H 1.09005 * 109.47186 * 36.71690 * 10 9 5 34 34 H 1.09002 * 109.47631 * 156.71566 * 10 9 5 35 35 H 1.09000 * 109.46666 * 210.00120 * 12 11 2 36 36 H 1.08994 * 109.47347 * 330.00122 * 12 11 2 37 37 H 1.08999 * 109.46562 * 294.17405 * 14 13 12 38 38 H 1.09000 * 109.46699 * 54.14864 * 14 13 12 39 39 H 1.08997 * 109.50424 * 299.23820 * 15 14 13 40 40 H 1.09000 * 109.53480 * 179.13902 * 15 14 13 41 41 H 1.08998 * 109.52453 * 62.25175 * 16 15 14 42 42 H 0.97001 * 119.99610 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.50417 * 297.71730 * 25 16 15 44 44 H 1.08998 * 109.54188 * 177.61612 * 25 16 15 45 45 H 1.09000 * 109.46473 * 305.85667 * 26 13 12 46 46 H 1.09002 * 109.46267 * 65.83252 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0065 6 7 5.7519 0.0001 -0.0132 7 8 6.3614 1.0477 0.1072 8 8 6.3604 -1.0474 -0.1391 9 6 3.5807 -1.1969 -0.0007 10 6 4.3342 -2.5020 -0.0009 11 6 2.1981 -1.1970 -0.0005 12 6 1.4446 -2.5021 -0.0005 13 7 1.1993 -2.9259 -1.3855 14 6 0.2935 -1.9934 -2.0685 15 6 0.1763 -2.3826 -3.5439 16 6 -0.3598 -3.8130 -3.6483 17 6 -0.4221 -4.2244 -5.0968 18 1 0.1482 -5.0742 -5.4419 19 6 -1.2072 -3.5159 -5.9815 20 7 -1.2612 -3.8746 -7.2457 21 14 -2.1941 -2.0466 -5.3846 22 1 -1.3741 -0.8149 -5.5116 23 1 -3.4237 -1.9095 -6.2059 24 1 -2.5690 -2.2470 -3.9618 25 6 0.5757 -4.7571 -2.8882 26 6 0.6814 -4.2991 -1.4317 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 4.6157 -2.7589 -1.0221 33 1 5.2319 -2.4033 0.6095 34 1 3.7002 -3.2877 0.4099 35 1 2.0340 -3.2618 0.5129 36 1 0.4924 -2.3719 0.5136 37 1 -0.6908 -2.0362 -1.6023 38 1 0.6885 -0.9805 -1.9904 39 1 1.1581 -2.3267 -4.0141 40 1 -0.5079 -1.6998 -4.0477 41 1 -1.3579 -3.8607 -3.2129 42 1 -1.8138 -3.3763 -7.8680 43 1 1.5638 -4.7386 -3.3480 44 1 0.1772 -5.7711 -2.9228 45 1 1.3580 -4.9609 -0.8911 46 1 -0.3049 -4.3311 -0.9687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877191181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:33 Heat of formation + Delta-G solvation = 11.138964 kcal Electronic energy + Delta-G solvation = -27741.620745 eV Core-core repulsion = 24019.758136 eV Total energy + Delta-G solvation = -3721.862609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.31579 -41.40599 -39.60088 -37.75982 -36.15956 -35.01086 -34.32343 -32.85061 -31.70392 -29.77372 -29.24123 -27.96372 -26.00787 -25.88205 -24.07381 -23.29654 -22.40332 -21.82496 -20.47553 -19.70307 -19.57387 -18.83584 -18.65814 -17.46090 -17.33325 -16.42262 -16.26844 -15.97545 -15.54632 -15.14542 -14.96515 -14.85729 -14.60318 -14.32156 -14.17489 -14.00356 -13.73980 -13.66876 -13.30888 -13.18015 -13.08202 -12.95617 -12.65986 -12.59990 -12.36524 -12.26084 -12.20062 -12.08966 -11.91884 -11.66627 -11.58139 -11.35930 -10.96435 -10.82434 -10.60376 -10.21436 -10.00767 -9.16746 -8.29503 -6.32994 -1.18497 -0.04034 0.29586 0.43490 1.27852 1.33363 1.44708 2.18593 2.32204 3.05986 3.06203 3.28439 3.42491 3.57513 3.78680 3.80120 4.00599 4.08322 4.17162 4.23607 4.32609 4.37731 4.44670 4.51483 4.57221 4.61912 4.66308 4.67865 4.72469 4.78833 4.79562 4.81728 4.94698 4.95823 5.02500 5.11505 5.13149 5.17693 5.25769 5.30210 5.35417 5.55272 5.61934 5.67971 5.78879 6.15081 6.21630 6.33542 6.54706 6.74919 7.32275 8.88015 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003744 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.972931 B = 7477.484035 C = 7777.389038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 C -0.121 4.121 4 C -0.052 4.052 5 C -0.080 4.080 6 N 0.037 4.963 7 O -0.194 6.194 8 O -0.179 6.179 9 C 0.003 3.997 10 C -0.128 4.128 11 C -0.090 4.090 12 C 0.089 3.911 13 N -0.540 5.540 14 C 0.058 3.942 15 C -0.115 4.115 16 C 0.014 3.986 17 C -0.518 4.518 18 H 0.027 0.973 19 C 0.005 3.995 20 N -0.955 5.955 21 Si 0.953 3.047 22 H -0.268 1.268 23 H -0.302 1.302 24 H -0.238 1.238 25 C -0.094 4.094 26 C 0.067 3.933 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 10.394 22.716 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.164 4.164 6 N 0.548 4.452 7 O -0.403 6.403 8 O -0.391 6.391 9 C 0.001 3.999 10 C -0.184 4.184 11 C -0.091 4.091 12 C -0.038 4.038 13 N -0.265 5.265 14 C -0.070 4.070 15 C -0.153 4.153 16 C -0.005 4.005 17 C -0.556 4.556 18 H 0.045 0.955 19 C -0.191 4.191 20 N -0.596 5.596 21 Si 0.780 3.220 22 H -0.194 1.194 23 H -0.230 1.230 24 H -0.162 1.162 25 C -0.132 4.132 26 C -0.060 4.060 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.196 0.804 31 H 0.180 0.820 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.126 10.413 22.324 24.831 hybrid contribution -0.385 0.357 -0.636 0.824 sum 2.741 10.770 21.688 24.370 Atomic orbital electron populations 1.21435 0.88448 1.05509 1.04153 1.20578 0.98263 0.92163 0.90749 1.21389 0.91734 0.99783 1.01034 1.21259 0.95474 0.96588 0.93827 1.21140 0.77595 0.97850 1.19840 1.43859 1.04565 0.99879 0.96942 1.94489 1.69894 1.21344 1.54601 1.94469 1.70361 1.20757 1.53465 1.19807 0.94058 0.94292 0.91787 1.21294 1.00478 0.92639 1.04003 1.19621 0.91046 0.96343 1.02084 1.21191 0.99540 0.93331 0.89707 1.61860 1.47571 1.02467 1.14574 1.22419 0.94534 0.96462 0.93549 1.21877 0.99817 0.97929 0.95705 1.19138 0.95110 0.92789 0.93487 1.21466 1.26428 1.13524 0.94231 0.95505 1.25984 0.97731 1.00744 0.94645 1.70079 1.42027 1.42760 1.04760 0.85777 0.77250 0.79477 0.79546 1.19417 1.22957 1.16155 1.21396 0.98911 0.98224 0.94661 1.22086 0.98784 0.88864 0.96288 0.89533 0.89628 0.88072 0.80406 0.81999 0.90212 0.89479 0.88770 0.87675 0.91091 0.93702 0.89924 0.93729 0.94414 0.95869 0.92740 0.93711 0.92568 0.88847 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.17 71.24 0.58 -1.01 16 2 C -0.02 -0.26 4.87 -19.86 -0.10 -0.35 16 3 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 4 C -0.05 -0.94 9.56 22.27 0.21 -0.72 16 5 C -0.08 -1.88 6.83 36.38 0.25 -1.63 16 6 N 0.04 1.03 4.45 -46.46 -0.21 0.82 16 7 O -0.19 -5.58 18.47 18.89 0.35 -5.23 16 8 O -0.18 -5.24 15.37 18.89 0.29 -4.95 16 9 C 0.00 0.06 5.88 -19.86 -0.12 -0.06 16 10 C -0.13 -2.69 8.37 71.24 0.60 -2.09 16 11 C -0.09 -1.69 4.89 -19.86 -0.10 -1.78 16 12 C 0.09 1.57 4.49 85.56 0.38 1.95 16 13 N -0.54 -13.63 4.65 -900.95 -4.19 -17.82 16 14 C 0.06 1.62 3.68 86.33 0.32 1.94 16 15 C -0.12 -4.55 4.84 30.65 0.15 -4.40 16 16 C 0.01 0.60 1.75 -11.46 -0.02 0.58 16 17 C -0.52 -29.43 9.15 25.60 0.23 -29.20 16 18 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 19 C 0.01 0.29 5.45 84.65 0.46 0.75 16 20 N -0.96 -60.32 13.96 21.45 0.30 -60.02 16 21 Si 0.95 43.80 24.37 68.60 1.67 45.47 16 22 H -0.27 -11.74 6.89 99.48 0.69 -11.05 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.24 -9.71 6.53 99.48 0.65 -9.06 16 25 C -0.09 -3.45 5.32 30.64 0.16 -3.28 16 26 C 0.07 1.74 5.46 86.33 0.47 2.21 16 27 H 0.09 1.20 5.77 -2.39 -0.01 1.19 16 28 H 0.09 0.90 5.95 -2.39 -0.01 0.88 16 29 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.16 2.42 7.63 -2.91 -0.02 2.39 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.89 5.87 -2.38 -0.01 1.87 16 34 H 0.09 1.56 5.72 -2.39 -0.01 1.55 16 35 H 0.11 1.57 5.73 -2.39 -0.01 1.55 16 36 H 0.07 1.01 5.93 -2.39 -0.01 0.99 16 37 H 0.04 1.14 7.65 -2.39 -0.02 1.12 16 38 H 0.08 2.08 4.57 -2.39 -0.01 2.07 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.55 3.38 -2.39 -0.01 1.54 16 41 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.09 1.96 8.02 -2.39 -0.02 1.94 16 46 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.45 346.74 2.85 -68.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.93 Total: 11.67 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.70 Total: -38.53 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -4.09 Total: -77.02 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.64 Total: -10.19 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Total: -71.45 2.85 -68.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877191181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.735 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds