Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48508 * 109.46629 * 273.86540 * 3 2 1 5 5 H 1.48492 * 109.47078 * 33.86750 * 3 2 1 6 6 H 1.48502 * 109.47091 * 153.87265 * 3 2 1 7 7 C 1.38898 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99799 * 343.03133 * 7 2 1 9 9 N 1.37201 * 120.00244 * 163.02807 * 7 2 1 10 10 C 1.34776 * 120.00051 * 125.49925 * 9 7 2 11 11 O 1.21273 * 119.99745 * 184.91926 * 10 9 7 12 12 C 1.50692 * 120.00097 * 4.92497 * 10 9 7 13 13 C 1.53005 * 109.47285 * 185.88251 * 12 10 9 14 14 C 1.53002 * 109.47001 * 176.06008 * 13 12 10 15 15 C 1.53005 * 109.47001 * 179.97438 * 14 13 12 16 16 C 1.53170 * 109.54178 * 294.55509 * 15 14 13 17 17 C 1.53089 * 109.16442 * 183.14960 * 16 15 14 18 18 O 1.42910 * 109.41201 * 57.60877 * 17 16 15 19 19 C 1.42901 * 114.09653 * 298.84423 * 18 17 16 20 20 C 1.53087 * 109.41742 * 61.15861 * 19 18 17 21 21 C 1.39433 * 120.00205 * 305.49891 * 9 7 2 22 22 C 1.39068 * 119.69532 * 5.00281 * 21 9 7 23 23 C 1.38370 * 119.09995 * 180.02562 * 22 21 9 24 24 C 1.38823 * 118.49459 * 359.97438 * 23 22 21 25 25 C 1.38153 * 119.31084 * 0.25793 * 24 23 22 26 26 N 1.31887 * 120.84921 * 359.47045 * 25 24 23 27 27 H 0.97000 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47305 * 305.88033 * 12 10 9 29 29 H 1.09004 * 109.47404 * 65.88182 * 12 10 9 30 30 H 1.08999 * 109.46789 * 296.05935 * 13 12 10 31 31 H 1.08996 * 109.46913 * 56.05767 * 13 12 10 32 32 H 1.08999 * 109.47289 * 299.99621 * 14 13 12 33 33 H 1.08996 * 109.47484 * 60.00108 * 14 13 12 34 34 H 1.09001 * 109.54092 * 54.82028 * 15 14 13 35 35 H 1.08998 * 109.52777 * 303.05752 * 16 15 14 36 36 H 1.09007 * 109.52501 * 63.24918 * 16 15 14 37 37 H 1.08997 * 109.48615 * 297.62629 * 17 16 15 38 38 H 1.09000 * 109.48781 * 177.59177 * 17 16 15 39 39 H 1.09003 * 109.47986 * 301.16977 * 19 18 17 40 40 H 1.09001 * 109.49060 * 181.15125 * 19 18 17 41 41 H 1.08997 * 109.52176 * 182.49089 * 20 19 18 42 42 H 1.08996 * 109.52180 * 62.29562 * 20 19 18 43 43 H 1.08005 * 120.45101 * 0.04183 * 22 21 9 44 44 H 1.08005 * 120.75608 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.34686 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.57626 * 179.75190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4138 2.0935 -1.3970 5 1 1.4889 2.6276 0.7802 6 1 3.5842 1.4178 0.6166 7 6 2.0086 -1.2029 0.0005 8 1 1.5038 -2.1177 0.2739 9 7 3.3358 -1.2289 -0.3463 10 6 4.2406 -1.7730 0.4914 11 8 5.4228 -1.7166 0.2266 12 6 3.7835 -2.4514 1.7569 13 6 5.0026 -2.8485 2.5918 14 6 4.5375 -3.4482 3.9204 15 6 5.7566 -3.8458 4.7550 16 6 6.5108 -4.9791 4.0528 17 6 7.6826 -5.4234 4.9320 18 8 7.1896 -5.8321 6.2096 19 6 6.5164 -4.7996 6.9327 20 6 5.2977 -4.3302 6.1338 21 6 3.7485 -0.6926 -1.5654 22 6 2.8277 -0.0401 -2.3780 23 6 3.2505 0.4870 -3.5855 24 6 4.5850 0.3434 -3.9398 25 6 5.4438 -0.3211 -3.0857 26 7 5.0134 -0.8088 -1.9384 27 1 -0.4850 0.8401 -0.0004 28 1 3.1577 -1.7674 2.3302 29 1 3.2100 -3.3433 1.5043 30 1 5.5917 -3.5859 2.0467 31 1 5.6133 -1.9666 2.7852 32 1 3.9484 -2.7107 4.4655 33 1 3.9268 -4.3301 3.7270 34 1 6.4152 -2.9851 4.8715 35 1 5.8367 -5.8204 3.8919 36 1 6.8889 -4.6255 3.0935 37 1 8.3771 -4.5930 5.0591 38 1 8.1974 -6.2585 4.4570 39 1 7.1956 -3.9609 7.0860 40 1 6.1911 -5.1850 7.8990 41 1 4.8083 -3.5125 6.6628 42 1 4.5991 -5.1584 6.0150 43 1 1.7966 0.0541 -2.0707 44 1 2.5582 0.9994 -4.2371 45 1 4.9472 0.7430 -4.8755 46 1 6.4821 -0.4388 -3.3589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -45.202733 kcal Electronic energy + Delta-G solvation = -26798.495333 eV Core-core repulsion = 23074.189564 eV Total energy + Delta-G solvation = -3724.305769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12505 -39.54163 -38.21991 -35.84946 -35.12878 -32.53833 -32.28976 -31.48855 -31.18256 -29.67058 -27.62266 -25.38885 -24.27781 -23.59394 -22.67959 -22.08563 -20.84129 -20.03729 -19.21222 -18.16825 -16.41007 -16.13872 -16.13011 -16.03549 -15.50108 -15.40777 -14.87422 -14.74448 -14.44197 -14.20129 -13.96481 -13.69289 -13.60683 -13.14113 -12.85306 -12.70089 -12.42049 -12.38187 -12.19714 -11.74858 -11.54344 -11.45372 -11.40936 -11.14958 -11.11123 -10.69422 -10.60900 -10.50464 -10.29881 -10.25483 -10.08690 -9.65548 -9.56647 -9.26391 -9.18819 -8.71834 -8.17499 -7.24393 -6.68301 -4.54997 1.85334 2.04702 3.03074 3.14056 3.24173 3.65604 3.75644 3.92222 4.03774 4.53076 4.62478 4.66316 4.79216 4.83941 4.91505 5.08289 5.23512 5.28423 5.33249 5.44097 5.44640 5.49757 5.50772 5.59126 5.69283 5.76261 5.77083 5.87634 5.91567 5.95462 6.01318 6.02790 6.08442 6.17834 6.24814 6.33914 6.40547 6.52357 6.63962 6.72748 6.75024 6.91647 7.06443 7.15811 7.47661 7.94375 8.05901 8.58124 8.78117 9.11208 9.53132 10.36440 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.003167 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.227213 B = 8840.426204 C = 9909.651457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.087 3.913 3 Si 0.857 3.143 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.365 4.365 8 H 0.111 0.889 9 N -0.411 5.411 10 C 0.496 3.504 11 O -0.518 6.518 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.089 4.089 16 C -0.153 4.153 17 C 0.060 3.940 18 O -0.387 6.387 19 C 0.060 3.940 20 C -0.152 4.152 21 C 0.358 3.642 22 C -0.202 4.202 23 C -0.062 4.062 24 C -0.235 4.235 25 C 0.116 3.884 26 N -0.490 5.490 27 H 0.280 0.720 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.152 0.848 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 -4.351 6.087 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.124 4.124 3 Si 0.682 3.318 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.129 0.871 9 N -0.125 5.125 10 C 0.286 3.714 11 O -0.393 6.393 12 C -0.160 4.160 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.108 4.108 16 C -0.191 4.191 17 C -0.017 4.017 18 O -0.306 6.306 19 C -0.016 4.016 20 C -0.189 4.189 21 C 0.128 3.872 22 C -0.226 4.226 23 C -0.088 4.088 24 C -0.257 4.257 25 C -0.043 4.043 26 N -0.206 5.206 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.170 0.830 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.567 -4.901 6.726 11.944 hybrid contribution -0.625 1.781 -0.807 2.053 sum 7.942 -3.119 5.919 10.385 Atomic orbital electron populations 1.69728 1.06134 1.28753 1.43456 1.25462 0.95107 0.98660 0.93157 0.87250 0.81164 0.83356 0.80045 1.17927 1.20651 1.18701 1.18970 0.82534 0.96517 1.51182 0.87145 1.41634 1.08562 1.51204 1.11078 1.21140 0.85523 0.79702 0.85003 1.90651 1.16684 1.57368 1.74572 1.21440 0.98780 1.01427 0.94373 1.21410 0.97286 1.01058 0.94502 1.21636 0.96720 1.00830 0.95820 1.21206 0.97548 0.97690 0.94315 1.22304 0.98181 0.98984 0.99614 1.22608 0.95222 1.00110 0.83744 1.87905 1.74805 1.37240 1.30656 1.22570 0.93167 0.90981 0.94915 1.22259 0.98495 1.01714 0.96462 1.19288 0.88682 0.91801 0.87381 1.21952 1.02502 1.02276 0.95832 1.21261 0.95577 0.96600 0.95402 1.21786 0.94994 1.06801 1.02157 1.22482 0.99311 0.93326 0.89168 1.67713 1.14872 1.21335 1.16682 0.90942 0.88637 0.89498 0.91530 0.91808 0.91723 0.91835 0.91124 0.91033 0.90174 0.93329 0.89064 0.93397 0.89182 0.90887 0.90998 0.83045 0.85783 0.86089 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.84 13.96 55.49 0.77 -21.07 16 2 C 0.09 2.17 3.78 -17.49 -0.07 2.11 16 3 Si 0.86 20.21 24.82 -169.99 -4.22 15.99 16 4 H -0.25 -5.82 6.16 56.52 0.35 -5.47 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.37 -9.15 8.01 -14.90 -0.12 -9.27 16 8 H 0.11 2.84 7.97 -52.48 -0.42 2.42 16 9 N -0.41 -10.15 2.10 -60.71 -0.13 -10.28 16 10 C 0.50 11.57 7.57 -10.99 -0.08 11.49 16 11 O -0.52 -13.02 14.29 5.56 0.08 -12.94 16 12 C -0.12 -2.22 4.58 -27.88 -0.13 -2.35 16 13 C -0.10 -1.63 4.28 -26.73 -0.11 -1.74 16 14 C -0.11 -1.40 4.69 -26.73 -0.13 -1.52 16 15 C -0.09 -0.98 2.27 -90.44 -0.21 -1.19 16 16 C -0.15 -1.67 5.10 -26.60 -0.14 -1.81 16 17 C 0.06 0.61 6.84 37.20 0.25 0.87 16 18 O -0.39 -4.50 10.77 -35.23 -0.38 -4.88 16 19 C 0.06 0.57 6.84 37.20 0.25 0.83 16 20 C -0.15 -1.48 5.42 -26.59 -0.14 -1.62 16 21 C 0.36 8.77 6.05 -154.63 -0.94 7.84 16 22 C -0.20 -4.58 6.07 -39.23 -0.24 -4.82 16 23 C -0.06 -1.18 10.16 -39.32 -0.40 -1.58 16 24 C -0.24 -4.09 10.11 -39.40 -0.40 -4.49 16 25 C 0.12 2.25 11.18 -17.56 -0.20 2.05 16 26 N -0.49 -11.65 7.92 -12.33 -0.10 -11.75 16 27 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.10 1.77 7.85 -51.93 -0.41 1.36 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.05 6.64 -51.93 -0.35 0.71 16 31 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.91 6.75 -51.93 -0.35 0.56 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.15 3.61 4.81 -52.48 -0.25 3.36 16 44 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 45 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -30.00 361.33 -8.61 -38.61 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.30 Total: 6.07 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.78 Total: -5.20 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.55 Total: -43.10 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.30 Total: -17.82 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.22 Total: 15.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.00 -8.61 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.597 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds