Wall clock time and date at job start Tue Mar 31 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48508 * 109.46629 * 273.86540 * 3 2 1 5 5 H 1.48492 * 109.47078 * 33.86750 * 3 2 1 6 6 H 1.48502 * 109.47091 * 153.87265 * 3 2 1 7 7 C 1.38898 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99799 * 343.03133 * 7 2 1 9 9 N 1.37201 * 120.00244 * 163.02807 * 7 2 1 10 10 C 1.34776 * 120.00051 * 125.49925 * 9 7 2 11 11 O 1.21273 * 119.99745 * 184.91926 * 10 9 7 12 12 C 1.50692 * 120.00097 * 4.92497 * 10 9 7 13 13 C 1.53005 * 109.47285 * 185.88251 * 12 10 9 14 14 C 1.53002 * 109.47001 * 176.06008 * 13 12 10 15 15 C 1.53005 * 109.47001 * 179.97438 * 14 13 12 16 16 C 1.53170 * 109.54178 * 294.55509 * 15 14 13 17 17 C 1.53089 * 109.16442 * 183.14960 * 16 15 14 18 18 O 1.42910 * 109.41201 * 57.60877 * 17 16 15 19 19 C 1.42901 * 114.09653 * 298.84423 * 18 17 16 20 20 C 1.53087 * 109.41742 * 61.15861 * 19 18 17 21 21 C 1.39433 * 120.00205 * 305.49891 * 9 7 2 22 22 C 1.39068 * 119.69532 * 5.00281 * 21 9 7 23 23 C 1.38370 * 119.09995 * 180.02562 * 22 21 9 24 24 C 1.38823 * 118.49459 * 359.97438 * 23 22 21 25 25 C 1.38153 * 119.31084 * 0.25793 * 24 23 22 26 26 N 1.31887 * 120.84921 * 359.47045 * 25 24 23 27 27 H 0.97000 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47305 * 305.88033 * 12 10 9 29 29 H 1.09004 * 109.47404 * 65.88182 * 12 10 9 30 30 H 1.08999 * 109.46789 * 296.05935 * 13 12 10 31 31 H 1.08996 * 109.46913 * 56.05767 * 13 12 10 32 32 H 1.08999 * 109.47289 * 299.99621 * 14 13 12 33 33 H 1.08996 * 109.47484 * 60.00108 * 14 13 12 34 34 H 1.09001 * 109.54092 * 54.82028 * 15 14 13 35 35 H 1.08998 * 109.52777 * 303.05752 * 16 15 14 36 36 H 1.09007 * 109.52501 * 63.24918 * 16 15 14 37 37 H 1.08997 * 109.48615 * 297.62629 * 17 16 15 38 38 H 1.09000 * 109.48781 * 177.59177 * 17 16 15 39 39 H 1.09003 * 109.47986 * 301.16977 * 19 18 17 40 40 H 1.09001 * 109.49060 * 181.15125 * 19 18 17 41 41 H 1.08997 * 109.52176 * 182.49089 * 20 19 18 42 42 H 1.08996 * 109.52180 * 62.29562 * 20 19 18 43 43 H 1.08005 * 120.45101 * 0.04183 * 22 21 9 44 44 H 1.08005 * 120.75608 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.34686 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.57626 * 179.75190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4138 2.0935 -1.3970 5 1 1.4889 2.6276 0.7802 6 1 3.5842 1.4178 0.6166 7 6 2.0086 -1.2029 0.0005 8 1 1.5038 -2.1177 0.2739 9 7 3.3358 -1.2289 -0.3463 10 6 4.2406 -1.7730 0.4914 11 8 5.4228 -1.7166 0.2266 12 6 3.7835 -2.4514 1.7569 13 6 5.0026 -2.8485 2.5918 14 6 4.5375 -3.4482 3.9204 15 6 5.7566 -3.8458 4.7550 16 6 6.5108 -4.9791 4.0528 17 6 7.6826 -5.4234 4.9320 18 8 7.1896 -5.8321 6.2096 19 6 6.5164 -4.7996 6.9327 20 6 5.2977 -4.3302 6.1338 21 6 3.7485 -0.6926 -1.5654 22 6 2.8277 -0.0401 -2.3780 23 6 3.2505 0.4870 -3.5855 24 6 4.5850 0.3434 -3.9398 25 6 5.4438 -0.3211 -3.0857 26 7 5.0134 -0.8088 -1.9384 27 1 -0.4850 0.8401 -0.0004 28 1 3.1577 -1.7674 2.3302 29 1 3.2100 -3.3433 1.5043 30 1 5.5917 -3.5859 2.0467 31 1 5.6133 -1.9666 2.7852 32 1 3.9484 -2.7107 4.4655 33 1 3.9268 -4.3301 3.7270 34 1 6.4152 -2.9851 4.8715 35 1 5.8367 -5.8204 3.8919 36 1 6.8889 -4.6255 3.0935 37 1 8.3771 -4.5930 5.0591 38 1 8.1974 -6.2585 4.4570 39 1 7.1956 -3.9609 7.0860 40 1 6.1911 -5.1850 7.8990 41 1 4.8083 -3.5125 6.6628 42 1 4.5991 -5.1584 6.0150 43 1 1.7966 0.0541 -2.0707 44 1 2.5582 0.9994 -4.2371 45 1 4.9472 0.7430 -4.8755 46 1 6.4821 -0.4388 -3.3589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:23 Heat of formation + Delta-G solvation = -61.659074 kcal Electronic energy + Delta-G solvation = -26799.208933 eV Core-core repulsion = 23074.189564 eV Total energy + Delta-G solvation = -3725.019369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82166 -40.42150 -39.85130 -37.16675 -36.67986 -34.31612 -33.61588 -33.12805 -31.98750 -31.21827 -28.83757 -27.24518 -25.48821 -24.48435 -24.14161 -23.55700 -22.04879 -21.07264 -20.87817 -19.86220 -18.03718 -17.83078 -17.11953 -17.02867 -16.97064 -16.77740 -16.33545 -15.95843 -15.83023 -15.56141 -15.43212 -15.07406 -14.86553 -14.73153 -14.33830 -14.14592 -13.88779 -13.69070 -13.34872 -13.20654 -13.05859 -12.75078 -12.57091 -12.41375 -12.33553 -12.20093 -12.14772 -11.80637 -11.60524 -11.45433 -11.16317 -11.12459 -10.97103 -10.93069 -10.47505 -10.40266 -9.86409 -8.99314 -8.61750 -6.50556 0.24582 0.47351 1.15088 1.23186 1.32066 1.89551 2.06702 2.31193 2.71197 2.99787 3.13774 3.59967 3.77963 3.79129 3.90964 4.05407 4.07874 4.12170 4.18984 4.27851 4.30990 4.35331 4.39879 4.51071 4.53927 4.57677 4.70397 4.74378 4.80207 4.83696 4.86206 4.95611 4.98848 5.04859 5.09193 5.16614 5.18978 5.22330 5.30859 5.35164 5.44799 5.47262 5.53493 5.82505 6.00198 6.23136 6.28613 6.76364 6.97581 7.32047 7.74224 8.45473 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.003167 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.227213 B = 8840.426204 C = 9909.651457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.295 1.295 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.426 5.426 10 C 0.482 3.518 11 O -0.545 6.545 12 C -0.113 4.113 13 C -0.093 4.093 14 C -0.104 4.104 15 C -0.088 4.088 16 C -0.152 4.152 17 C 0.059 3.941 18 O -0.404 6.404 19 C 0.056 3.944 20 C -0.147 4.147 21 C 0.324 3.676 22 C -0.226 4.226 23 C -0.060 4.060 24 C -0.209 4.209 25 C 0.104 3.896 26 N -0.526 5.526 27 H 0.287 0.713 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.134 0.866 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -3.575 5.223 10.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.221 1.221 7 C -0.490 4.490 8 H 0.112 0.888 9 N -0.140 5.140 10 C 0.273 3.727 11 O -0.422 6.422 12 C -0.153 4.153 13 C -0.131 4.131 14 C -0.142 4.142 15 C -0.106 4.106 16 C -0.189 4.189 17 C -0.017 4.017 18 O -0.324 6.324 19 C -0.020 4.020 20 C -0.185 4.185 21 C 0.095 3.905 22 C -0.249 4.249 23 C -0.086 4.086 24 C -0.230 4.230 25 C -0.054 4.054 26 N -0.242 5.242 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.152 0.848 44 H 0.179 0.821 45 H 0.191 0.809 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.272 -4.114 5.842 11.705 hybrid contribution -0.763 1.542 -0.716 1.864 sum 8.509 -2.571 5.125 10.261 Atomic orbital electron populations 1.69748 1.06752 1.29620 1.44685 1.25696 0.95297 0.99950 0.92863 0.86644 0.78679 0.81870 0.80395 1.16593 1.19564 1.22119 1.18810 0.82949 0.96064 1.51135 0.88793 1.41774 1.08364 1.51970 1.11939 1.21931 0.85274 0.79471 0.85977 1.90604 1.17527 1.58589 1.75461 1.21475 0.99994 1.01141 0.92641 1.21317 0.95736 1.00417 0.95612 1.21567 0.97498 1.00899 0.94212 1.21181 0.96792 0.97696 0.94970 1.22273 0.98484 0.98764 0.99424 1.22661 0.94932 1.00764 0.83354 1.87884 1.75089 1.38331 1.31072 1.22725 0.92993 0.90985 0.95290 1.22223 0.98685 1.01975 0.95596 1.19514 0.89622 0.93330 0.87987 1.21963 1.01474 1.03871 0.97600 1.21772 0.97168 0.95442 0.94230 1.22303 0.93714 1.03972 1.03040 1.23210 1.01348 0.92710 0.88166 1.67665 1.14858 1.22743 1.18954 0.90280 0.88871 0.88639 0.92032 0.93194 0.91223 0.91285 0.91340 0.91389 0.91020 0.92775 0.88058 0.92696 0.87560 0.89699 0.91268 0.84818 0.82118 0.80930 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.44 13.96 21.65 0.30 -45.13 16 2 C 0.07 3.59 3.78 84.91 0.32 3.91 16 3 Si 0.90 42.10 24.82 68.60 1.70 43.80 16 4 H -0.24 -10.68 6.16 99.48 0.61 -10.07 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 7 C -0.36 -18.76 8.01 84.01 0.67 -18.09 16 8 H 0.09 5.05 7.97 -2.91 -0.02 5.02 16 9 N -0.43 -21.69 2.10 -464.38 -0.97 -22.66 16 10 C 0.48 23.33 7.57 87.65 0.66 24.00 16 11 O -0.54 -28.34 14.29 -3.01 -0.04 -28.38 16 12 C -0.11 -4.31 4.58 29.85 0.14 -4.17 16 13 C -0.09 -2.95 4.28 30.60 0.13 -2.82 16 14 C -0.10 -2.55 4.69 30.60 0.14 -2.41 16 15 C -0.09 -1.88 2.27 -10.68 -0.02 -1.90 16 16 C -0.15 -3.25 5.10 30.68 0.16 -3.10 16 17 C 0.06 1.16 6.84 72.01 0.49 1.66 16 18 O -0.40 -8.90 10.77 -148.98 -1.60 -10.51 16 19 C 0.06 0.98 6.84 72.01 0.49 1.47 16 20 C -0.15 -2.66 5.42 30.68 0.17 -2.49 16 21 C 0.32 16.02 6.05 132.90 0.80 16.82 16 22 C -0.23 -10.09 6.07 22.50 0.14 -9.95 16 23 C -0.06 -2.10 10.16 22.44 0.23 -1.87 16 24 C -0.21 -6.37 10.11 22.39 0.23 -6.14 16 25 C 0.10 3.76 11.18 84.66 0.95 4.71 16 26 N -0.53 -24.90 7.92 -192.94 -1.53 -26.43 16 27 H 0.29 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.09 3.57 7.85 -2.39 -0.02 3.55 16 29 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 30 H 0.06 2.01 6.64 -2.39 -0.02 1.99 16 31 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.64 6.75 -2.38 -0.02 1.63 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.13 6.40 4.81 -2.91 -0.01 6.39 16 44 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 45 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 46 H 0.18 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -66.76 361.33 4.42 -62.34 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.86 Total: 27.33 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.70 Total: -0.36 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -2.20 Total: -94.22 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.65 Total: -38.89 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.70 Total: 43.80 kcal Total: -66.76 4.42 -62.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.682 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds