Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 115.55325 * 2 1 4 4 C 1.53002 * 109.46884 * 34.33265 * 3 2 1 5 5 C 1.50699 * 109.46873 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.53009 * 117.51508 * 145.70391 * 2 1 3 26 26 C 1.53006 * 60.00031 * 107.48049 * 25 2 1 27 27 H 1.09000 * 109.46734 * 85.58181 * 1 2 3 28 28 H 1.08993 * 109.47461 * 205.58264 * 1 2 3 29 29 H 1.08999 * 109.46961 * 325.58400 * 1 2 3 30 30 H 1.08995 * 109.47213 * 274.32871 * 3 2 1 31 31 H 1.08996 * 109.46876 * 154.32621 * 3 2 1 32 32 H 1.08995 * 109.47518 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47042 * 299.99777 * 4 3 2 34 34 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 35 35 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 36 36 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 39 39 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 40 40 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 42 42 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.49326 * 214.97232 * 25 2 1 44 44 H 1.08996 * 117.49728 * 359.97438 * 25 2 1 45 45 H 1.09001 * 117.49352 * 252.51386 * 26 25 2 46 46 H 1.08990 * 117.49541 * 107.49005 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8136 5 6 1.9849 3.7140 0.8131 6 8 3.0290 3.8869 0.2207 7 7 1.4057 4.7378 1.4708 8 6 2.0077 5.9971 1.4708 9 7 3.1440 6.1809 0.8190 10 6 3.7495 7.3531 0.7984 11 6 3.2123 8.4418 1.4565 12 6 2.0179 8.2971 2.1482 13 6 1.4026 7.0530 2.1521 14 8 0.2315 6.8643 2.8168 15 6 -0.3183 7.9951 3.4960 16 6 -1.6265 7.5926 4.1800 17 6 -2.2059 8.7848 4.8969 18 1 -1.6923 9.7345 4.8678 19 6 -3.3912 8.6631 5.5906 20 7 -3.8966 9.7034 6.2166 21 14 -4.2792 7.0204 5.6414 22 1 -3.8030 6.2363 6.8091 23 1 -5.7409 7.2513 5.7631 24 1 -3.9992 6.2675 4.3923 25 6 2.2369 -1.1211 0.7646 26 6 2.2364 -1.1208 -0.7654 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3634 -0.9268 0.4437 29 1 -0.3633 0.8478 0.5808 30 1 2.2767 1.7416 -1.0247 31 1 3.1822 1.3086 0.4452 32 1 1.2485 1.9930 1.8383 33 1 0.3428 2.4260 0.3684 34 1 0.5704 4.5996 1.9443 35 1 4.6785 7.4629 0.2586 36 1 3.7167 9.3965 1.4332 37 1 1.5771 9.1333 2.6706 38 1 -0.5143 8.7908 2.7773 39 1 0.3900 8.3486 4.2453 40 1 -2.3346 7.2393 3.4306 41 1 -1.4308 6.7968 4.8987 42 1 -4.7307 9.6178 6.7043 43 1 3.1720 -0.8751 1.2677 44 1 1.6119 -1.8586 1.2682 45 1 1.6111 -1.8583 -1.2686 46 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931623843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = -16.736618 kcal Electronic energy + Delta-G solvation = -25742.975474 eV Core-core repulsion = 22019.904089 eV Total energy + Delta-G solvation = -3723.071385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94908 -39.55908 -38.43693 -37.82743 -34.86809 -33.46095 -32.67657 -31.66070 -30.90559 -29.32715 -28.49631 -25.74902 -25.42273 -23.25497 -22.78247 -22.65571 -20.84130 -20.23016 -19.03753 -18.38553 -17.68845 -17.27084 -16.58006 -16.09127 -15.95380 -15.63737 -15.41662 -14.94606 -14.63912 -14.32069 -14.23600 -14.03330 -13.73337 -13.36939 -13.11360 -13.03257 -12.59622 -12.49841 -12.41972 -12.22507 -12.07849 -11.80171 -11.45430 -11.27711 -11.23218 -11.00455 -10.74544 -10.40926 -10.40290 -10.21012 -10.15768 -9.95089 -9.86798 -9.46124 -9.27533 -9.06788 -8.71178 -7.73265 -6.21821 -4.23683 1.15698 1.39033 2.68136 2.83791 3.20962 3.28903 3.31693 3.41589 3.45133 3.95868 4.22956 4.30392 4.40465 4.49407 4.62714 4.67476 4.88441 4.90281 4.93792 5.05392 5.09376 5.11930 5.22186 5.34745 5.36336 5.41827 5.46248 5.52909 5.61661 5.74339 5.75818 5.77058 5.79935 5.85141 5.93503 6.00343 6.09130 6.13503 6.27540 6.35611 6.53738 6.92022 7.09911 7.21855 7.48335 7.61615 8.01427 8.29138 8.31464 8.78340 9.37717 10.90582 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003037 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.248584 B = 9215.939374 C =11801.576855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.129 4.129 3 C -0.064 4.064 4 C -0.139 4.139 5 C 0.502 3.498 6 O -0.482 6.482 7 N -0.654 5.654 8 C 0.328 3.672 9 N -0.444 5.444 10 C 0.076 3.924 11 C -0.160 4.160 12 C -0.146 4.146 13 C 0.065 3.935 14 O -0.320 6.320 15 C 0.073 3.927 16 C -0.007 4.007 17 C -0.529 4.529 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.176 4.176 26 C -0.176 4.176 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.423 0.577 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.840 -15.844 -12.016 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.179 4.179 5 C 0.288 3.712 6 O -0.352 6.352 7 N -0.303 5.303 8 C 0.096 3.904 9 N -0.159 5.159 10 C -0.080 4.080 11 C -0.181 4.181 12 C -0.173 4.173 13 C 0.014 3.986 14 O -0.233 6.233 15 C -0.001 4.001 16 C -0.045 4.045 17 C -0.567 4.567 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.708 3.292 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.188 1.188 25 C -0.213 4.213 26 C -0.213 4.213 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.260 0.740 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.663 -16.619 -12.764 24.484 hybrid contribution -1.339 0.272 0.975 1.679 sum 11.324 -16.347 -11.789 23.118 Atomic orbital electron populations 1.21504 0.92007 1.02426 1.02181 1.21534 0.94891 0.91013 1.05435 1.20845 0.97997 0.90561 1.00802 1.21794 1.01090 0.91564 1.03471 1.20969 0.85543 0.85953 0.78720 1.90785 1.21338 1.83231 1.39817 1.43563 1.26835 1.07007 1.52851 1.17848 0.91499 0.84734 0.96359 1.67631 1.06410 1.24840 1.17065 1.22433 0.99634 0.87230 0.98737 1.21909 0.96381 1.00582 0.99242 1.21639 0.96972 0.96628 1.02029 1.19561 0.89019 0.93593 0.96462 1.86044 1.33088 1.40420 1.63725 1.23143 0.96700 0.85888 0.94323 1.19582 0.90644 0.98470 0.95780 1.20809 1.07656 0.96183 1.32076 0.90732 1.24938 0.96818 0.96756 0.94478 1.69887 1.20454 1.29881 1.33117 0.86750 0.78950 0.84271 0.79227 1.20041 1.21141 1.18784 1.23185 1.02501 1.01253 0.94388 1.23023 1.02532 1.01237 0.94482 0.92132 0.92472 0.91245 0.90692 0.90889 0.88440 0.88164 0.73961 0.82587 0.84689 0.83611 0.92321 0.92345 0.95369 0.95808 0.92359 0.88807 0.88916 0.88897 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.49 37.16 0.35 -0.51 16 2 C -0.13 -1.01 2.47 -154.50 -0.38 -1.39 16 3 C -0.06 -0.59 4.69 -26.73 -0.13 -0.72 16 4 C -0.14 -1.26 4.70 -27.88 -0.13 -1.39 16 5 C 0.50 6.64 7.79 -10.99 -0.09 6.56 16 6 O -0.48 -8.06 14.24 5.56 0.08 -7.98 16 7 N -0.65 -8.95 5.39 -11.29 -0.06 -9.01 16 8 C 0.33 5.24 7.45 -154.43 -1.15 4.09 16 9 N -0.44 -7.26 7.88 -12.22 -0.10 -7.35 16 10 C 0.08 1.02 11.17 -17.55 -0.20 0.82 16 11 C -0.16 -1.95 10.10 -39.44 -0.40 -2.35 16 12 C -0.15 -2.07 9.14 -39.17 -0.36 -2.43 16 13 C 0.07 1.04 6.72 -38.91 -0.26 0.77 16 14 O -0.32 -5.50 9.39 -19.66 -0.18 -5.69 16 15 C 0.07 1.37 4.70 37.16 0.17 1.55 16 16 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 17 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 18 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 21 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 25 C -0.18 -1.30 9.82 -26.72 -0.26 -1.56 16 26 C -0.18 -1.29 9.97 -26.72 -0.27 -1.56 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 7.90 -51.93 -0.41 -0.05 16 29 H 0.07 0.45 5.59 -51.93 -0.29 0.16 16 30 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.07 0.74 7.86 -51.93 -0.41 0.34 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.75 6.45 -51.93 -0.33 0.41 16 34 H 0.42 4.95 8.04 -40.82 -0.33 4.62 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 38 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 39 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 40 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 42 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 43 H 0.09 0.69 8.05 -51.93 -0.42 0.28 16 44 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -32.48 378.45 -9.15 -41.63 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.06 Total: 3.42 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.64 Total: -11.01 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.62 Total: -41.98 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -9.15 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931623843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.894 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds