Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 115.55325 * 2 1 4 4 C 1.53002 * 109.46884 * 34.33265 * 3 2 1 5 5 C 1.50699 * 109.46873 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.53009 * 117.51508 * 145.70391 * 2 1 3 26 26 C 1.53006 * 60.00031 * 107.48049 * 25 2 1 27 27 H 1.09000 * 109.46734 * 85.58181 * 1 2 3 28 28 H 1.08993 * 109.47461 * 205.58264 * 1 2 3 29 29 H 1.08999 * 109.46961 * 325.58400 * 1 2 3 30 30 H 1.08995 * 109.47213 * 274.32871 * 3 2 1 31 31 H 1.08996 * 109.46876 * 154.32621 * 3 2 1 32 32 H 1.08995 * 109.47518 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47042 * 299.99777 * 4 3 2 34 34 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 35 35 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 36 36 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 39 39 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 40 40 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 42 42 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.49326 * 214.97232 * 25 2 1 44 44 H 1.08996 * 117.49728 * 359.97438 * 25 2 1 45 45 H 1.09001 * 117.49352 * 252.51386 * 26 25 2 46 46 H 1.08990 * 117.49541 * 107.49005 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8136 5 6 1.9849 3.7140 0.8131 6 8 3.0290 3.8869 0.2207 7 7 1.4057 4.7378 1.4708 8 6 2.0077 5.9971 1.4708 9 7 3.1440 6.1809 0.8190 10 6 3.7495 7.3531 0.7984 11 6 3.2123 8.4418 1.4565 12 6 2.0179 8.2971 2.1482 13 6 1.4026 7.0530 2.1521 14 8 0.2315 6.8643 2.8168 15 6 -0.3183 7.9951 3.4960 16 6 -1.6265 7.5926 4.1800 17 6 -2.2059 8.7848 4.8969 18 1 -1.6923 9.7345 4.8678 19 6 -3.3912 8.6631 5.5906 20 7 -3.8966 9.7034 6.2166 21 14 -4.2792 7.0204 5.6414 22 1 -3.8030 6.2363 6.8091 23 1 -5.7409 7.2513 5.7631 24 1 -3.9992 6.2675 4.3923 25 6 2.2369 -1.1211 0.7646 26 6 2.2364 -1.1208 -0.7654 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3634 -0.9268 0.4437 29 1 -0.3633 0.8478 0.5808 30 1 2.2767 1.7416 -1.0247 31 1 3.1822 1.3086 0.4452 32 1 1.2485 1.9930 1.8383 33 1 0.3428 2.4260 0.3684 34 1 0.5704 4.5996 1.9443 35 1 4.6785 7.4629 0.2586 36 1 3.7167 9.3965 1.4332 37 1 1.5771 9.1333 2.6706 38 1 -0.5143 8.7908 2.7773 39 1 0.3900 8.3486 4.2453 40 1 -2.3346 7.2393 3.4306 41 1 -1.4308 6.7968 4.8987 42 1 -4.7307 9.6178 6.7043 43 1 3.1720 -0.8751 1.2677 44 1 1.6119 -1.8586 1.2682 45 1 1.6111 -1.8583 -1.2686 46 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931623843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = -35.214895 kcal Electronic energy + Delta-G solvation = -25743.776753 eV Core-core repulsion = 22019.904089 eV Total energy + Delta-G solvation = -3723.872663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05701 -40.58265 -39.28444 -38.92654 -35.97181 -35.38859 -33.48391 -33.05199 -32.39744 -30.48671 -29.06757 -27.31634 -26.39625 -24.53101 -23.82864 -23.26383 -22.45257 -21.30588 -19.75257 -19.59500 -19.07388 -18.30694 -18.20396 -17.25860 -17.03987 -16.72169 -16.29204 -16.13153 -15.91898 -15.50758 -15.28867 -15.24076 -14.77248 -14.61071 -14.27005 -14.07679 -13.82865 -13.66969 -13.35305 -13.15109 -13.03896 -12.83959 -12.70298 -12.39207 -12.19138 -12.09036 -11.91487 -11.87141 -11.80637 -11.64143 -11.46759 -11.28818 -10.99038 -10.79718 -10.46929 -10.42252 -10.16584 -8.87036 -8.32684 -6.39747 0.07938 0.26659 1.39069 1.40700 1.52336 1.67769 1.85856 2.08936 2.35267 2.86221 2.86423 3.03001 3.34919 3.64164 3.74359 3.83379 3.89923 4.00928 4.05283 4.11407 4.21993 4.24045 4.29068 4.35184 4.42994 4.45624 4.65248 4.67531 4.81052 4.89737 4.94203 4.97010 5.05330 5.06791 5.12783 5.13727 5.18437 5.24254 5.29744 5.30281 5.33310 5.48744 5.49404 5.59072 6.17104 6.23245 6.27558 6.66958 6.94421 7.25618 7.29325 8.82868 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003037 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.248584 B = 9215.939374 C =11801.576855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.132 4.132 3 C -0.060 4.060 4 C -0.129 4.129 5 C 0.499 3.501 6 O -0.522 6.522 7 N -0.653 5.653 8 C 0.313 3.687 9 N -0.475 5.475 10 C 0.074 3.926 11 C -0.148 4.148 12 C -0.150 4.150 13 C 0.042 3.958 14 O -0.323 6.323 15 C 0.086 3.914 16 C -0.005 4.005 17 C -0.536 4.536 18 H 0.041 0.959 19 C 0.011 3.989 20 N -0.944 5.944 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.243 1.243 25 C -0.175 4.175 26 C -0.178 4.178 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.430 0.570 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.269 0.731 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.896 -17.475 -12.569 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.133 4.133 3 C -0.098 4.098 4 C -0.168 4.168 5 C 0.288 3.712 6 O -0.395 6.395 7 N -0.301 5.301 8 C 0.081 3.919 9 N -0.190 5.190 10 C -0.083 4.083 11 C -0.168 4.168 12 C -0.177 4.177 13 C -0.008 4.008 14 O -0.236 6.236 15 C 0.012 3.988 16 C -0.042 4.042 17 C -0.574 4.574 18 H 0.060 0.940 19 C -0.187 4.187 20 N -0.584 5.584 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.166 1.166 25 C -0.212 4.212 26 C -0.215 4.215 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.269 0.731 35 H 0.202 0.798 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.723 -18.265 -13.323 25.942 hybrid contribution -1.199 0.892 1.090 1.850 sum 11.524 -17.373 -12.233 24.172 Atomic orbital electron populations 1.21528 0.90995 1.03109 1.02501 1.21515 0.95562 0.90127 1.06047 1.20751 0.97604 0.91614 0.99798 1.21835 1.01403 0.88792 1.04789 1.21711 0.85020 0.86975 0.77518 1.90758 1.23210 1.83983 1.41543 1.43670 1.27038 1.06603 1.52811 1.18061 0.91739 0.85545 0.96595 1.67692 1.06948 1.26460 1.17919 1.23030 1.00239 0.86703 0.98288 1.22261 0.95367 1.01787 0.97424 1.21898 0.97602 0.96170 1.02018 1.19680 0.88993 0.94601 0.97569 1.85966 1.34033 1.39412 1.64205 1.22757 0.95327 0.86264 0.94481 1.19433 0.92369 0.96627 0.95810 1.21123 1.07585 0.96557 1.32143 0.94041 1.25910 0.97890 1.00768 0.94120 1.70034 1.21274 1.32500 1.34608 0.85674 0.77363 0.79483 0.80285 1.19067 1.21044 1.16643 1.23234 1.02451 1.01129 0.94402 1.23087 1.02516 1.01252 0.94668 0.92007 0.91739 0.90634 0.92174 0.92363 0.86458 0.86055 0.73072 0.79839 0.81015 0.82939 0.92088 0.92087 0.95016 0.95157 0.92220 0.89186 0.87878 0.87913 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.49 71.98 0.68 -0.76 16 2 C -0.13 -1.88 2.47 -52.18 -0.13 -2.01 16 3 C -0.06 -1.07 4.69 30.60 0.14 -0.93 16 4 C -0.13 -2.13 4.70 29.85 0.14 -1.99 16 5 C 0.50 12.97 7.79 87.66 0.68 13.65 16 6 O -0.52 -17.63 14.24 -3.02 -0.04 -17.67 16 7 N -0.65 -17.38 5.39 -308.03 -1.66 -19.04 16 8 C 0.31 9.79 7.45 132.98 0.99 10.78 16 9 N -0.47 -15.15 7.88 -192.58 -1.52 -16.67 16 10 C 0.07 1.83 11.17 84.64 0.95 2.77 16 11 C -0.15 -3.23 10.10 22.36 0.23 -3.00 16 12 C -0.15 -4.02 9.14 22.53 0.21 -3.81 16 13 C 0.04 1.31 6.72 22.70 0.15 1.46 16 14 O -0.32 -10.75 9.39 -93.25 -0.88 -11.63 16 15 C 0.09 3.14 4.70 71.98 0.34 3.48 16 16 C 0.00 -0.21 4.41 29.85 0.13 -0.08 16 17 C -0.54 -28.99 9.66 25.60 0.25 -28.74 16 18 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 19 C 0.01 0.62 5.47 84.65 0.46 1.08 16 20 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 21 Si 0.95 41.67 27.47 68.60 1.88 43.55 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 25 C -0.18 -2.33 9.82 30.60 0.30 -2.03 16 26 C -0.18 -2.42 9.97 30.60 0.31 -2.11 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.66 7.90 -2.39 -0.02 0.64 16 29 H 0.07 0.76 5.59 -2.39 -0.01 0.75 16 30 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.12 1.53 6.45 -2.39 -0.02 1.51 16 34 H 0.43 9.59 8.04 -92.71 -0.75 8.85 16 35 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.15 3.81 6.44 -2.91 -0.02 3.79 16 38 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 39 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 40 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 41 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 44 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.26 378.45 4.10 -67.15 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.19 Total: 22.92 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.83 Total: -12.24 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -2.88 Total: -92.08 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.92 Total: -29.30 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Total: -71.26 4.10 -67.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931623843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.939 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds