Wall clock time and date at job start Tue Mar 31 2020 12:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00508 * 2 1 4 4 H 1.48495 * 109.47195 * 270.00007 * 3 2 1 5 5 H 1.48501 * 109.46869 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.99975 * 3 2 1 7 7 C 1.38818 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99850 * 170.57993 * 7 2 1 9 9 N 1.36933 * 120.00027 * 350.58699 * 7 2 1 10 10 C 1.47175 * 126.10001 * 170.01738 * 9 7 2 11 11 C 1.53583 * 105.65433 * 149.71621 * 10 9 7 12 12 H 1.08994 * 108.72873 * 271.01209 * 11 10 9 13 13 C 1.50962 * 111.30538 * 150.28571 * 11 10 9 14 14 C 1.53170 * 111.95652 * 178.50499 * 13 11 10 15 15 N 1.49727 * 105.59760 * 99.83712 * 14 13 11 16 16 C 1.34774 * 122.75581 * 111.59251 * 15 14 13 17 17 O 1.21274 * 120.00194 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99514 * 180.02562 * 16 15 14 19 19 C 1.50709 * 109.46836 * 179.97438 * 18 16 15 20 20 C 1.34510 * 125.79272 * 90.00192 * 19 18 16 21 21 C 1.41375 * 106.84038 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.84438 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.41952 * 359.97438 * 22 21 20 24 24 C 1.43640 * 114.48342 * 291.85774 * 15 14 13 25 25 C 1.50667 * 115.03458 * 57.68666 * 24 15 14 26 26 C 1.51858 * 112.40243 * 275.15242 * 25 24 15 27 27 H 1.09002 * 110.94785 * 323.20587 * 26 25 24 28 28 C 1.46772 * 126.10012 * 349.98323 * 9 7 2 29 29 H 0.97002 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.21388 * 30.66369 * 10 9 7 31 31 H 1.09009 * 110.20713 * 268.75928 * 10 9 7 32 32 H 1.09004 * 108.98266 * 57.87183 * 13 11 10 33 33 H 1.08995 * 108.98778 * 299.14663 * 13 11 10 34 34 H 1.09004 * 110.21617 * 340.81848 * 14 13 11 35 35 H 1.09000 * 110.32993 * 218.91747 * 14 13 11 36 36 H 1.08999 * 109.47776 * 59.99457 * 18 16 15 37 37 H 1.09001 * 109.47247 * 299.99269 * 18 16 15 38 38 H 1.08007 * 126.57631 * 359.97438 * 20 19 18 39 39 H 1.08002 * 126.57703 * 179.97438 * 21 20 19 40 40 H 1.08003 * 125.79080 * 179.74146 * 22 21 20 41 41 H 1.09004 * 108.42536 * 179.09474 * 24 15 14 42 42 H 1.09002 * 108.42657 * 296.35164 * 24 15 14 43 43 H 1.09000 * 108.94228 * 154.34431 * 25 24 15 44 44 H 1.09004 * 108.71304 * 35.80158 * 25 24 15 45 45 H 1.09001 * 109.77750 * 80.70795 * 28 9 7 46 46 H 1.08995 * 109.80585 * 319.93858 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0792 -1.2085 -0.1536 9 7 1.3392 -2.3802 0.1929 10 6 1.8925 -3.7324 0.0160 11 6 1.1390 -4.6225 1.0154 12 1 1.6732 -4.6119 1.9654 13 6 1.0315 -6.0420 0.5129 14 6 0.3143 -6.9515 1.5153 15 7 -1.0920 -7.0712 1.0156 16 6 -1.5963 -8.2208 0.5252 17 8 -0.9029 -9.2145 0.4750 18 6 -3.0215 -8.2712 0.0382 19 6 -3.3345 -9.6599 -0.4566 20 6 -3.8299 -10.6664 0.2855 21 6 -3.9673 -11.7801 -0.5744 22 6 -3.5483 -11.3875 -1.7907 23 8 -3.1670 -10.1020 -1.7137 24 6 -1.8577 -5.8586 1.0964 25 6 -1.2701 -4.6833 0.3592 26 6 -0.2422 -3.9347 1.1892 27 1 -0.5350 -3.9058 2.2388 28 6 -0.0598 -2.5194 0.6143 29 1 -0.4850 0.8401 0.0004 30 1 2.9594 -3.7350 0.2392 31 1 1.7194 -4.0798 -1.0027 32 1 2.0336 -6.4319 0.3345 33 1 0.4791 -6.0448 -0.4266 34 1 0.3244 -6.5003 2.5075 35 1 0.7888 -7.9324 1.5434 36 1 -3.1530 -7.5577 -0.7753 37 1 -3.6945 -8.0166 0.8570 38 1 -4.0748 -10.6308 1.3369 39 1 -4.3377 -12.7585 -0.3061 40 1 -3.5195 -12.0027 -2.6779 41 1 -2.8526 -6.0520 0.6951 42 1 -1.9613 -5.5858 2.1466 43 1 -2.0732 -3.9976 0.0890 44 1 -0.7932 -5.0448 -0.5518 45 1 -0.7187 -2.3820 -0.2431 46 1 -0.2906 -1.7781 1.3793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946829095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:11 Heat of formation + Delta-G solvation = 13.406221 kcal Electronic energy + Delta-G solvation = -27056.676559 eV Core-core repulsion = 23334.912265 eV Total energy + Delta-G solvation = -3721.764294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70044 -40.37890 -38.57190 -35.95593 -33.50251 -33.16094 -32.49908 -31.94724 -30.73512 -27.99186 -27.60515 -26.64676 -24.30147 -22.92180 -22.66209 -21.90048 -20.86681 -20.28542 -19.39777 -18.29875 -17.57697 -17.46306 -16.85388 -16.10525 -15.77416 -15.66035 -14.89937 -14.81581 -14.39614 -14.17275 -13.75941 -13.57805 -13.25387 -12.98309 -12.96051 -12.85630 -12.76440 -12.51574 -12.45350 -11.93750 -11.72744 -11.58815 -11.28717 -11.05393 -10.84119 -10.76739 -10.68340 -10.13350 -10.04883 -9.96466 -9.91303 -9.74467 -9.62240 -9.56402 -8.67695 -8.60618 -8.56587 -6.82036 -5.76147 -3.07590 1.55168 2.43633 2.50369 2.74544 3.07732 3.38515 3.44294 3.46054 4.34924 4.47853 4.51526 4.77751 4.79258 4.86917 5.01257 5.05090 5.08930 5.14111 5.22570 5.25155 5.39373 5.50222 5.56185 5.63980 5.68782 5.74996 5.77810 5.87092 5.90966 6.02640 6.08160 6.16426 6.21622 6.29818 6.34788 6.45441 6.49651 6.60858 6.68944 6.81825 6.98776 7.02393 7.43051 7.50725 7.60388 7.77746 8.05473 8.26076 9.19867 9.81267 10.50673 11.37441 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032442 B = 0.002539 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.883119 B =11025.876741 C =11298.798241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.139 3.861 11 C -0.098 4.098 12 H 0.063 0.937 13 C -0.127 4.127 14 C 0.116 3.884 15 N -0.608 5.608 16 C 0.523 3.477 17 O -0.535 6.535 18 C -0.062 4.062 19 C 0.009 3.991 20 C -0.199 4.199 21 C -0.214 4.214 22 C -0.039 4.039 23 O -0.171 6.171 24 C 0.105 3.895 25 C -0.131 4.131 26 C -0.103 4.103 27 H 0.068 0.932 28 C 0.179 3.821 29 H 0.252 0.748 30 H 0.039 0.961 31 H 0.014 0.986 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.202 0.798 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 -19.030 1.948 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.093 0.907 9 N -0.324 5.324 10 C 0.012 3.988 11 C -0.118 4.118 12 H 0.082 0.918 13 C -0.165 4.165 14 C -0.005 4.005 15 N -0.341 5.341 16 C 0.311 3.689 17 O -0.411 6.411 18 C -0.102 4.102 19 C -0.042 4.042 20 C -0.218 4.218 21 C -0.233 4.233 22 C -0.107 4.107 23 O -0.067 6.067 24 C -0.019 4.019 25 C -0.169 4.169 26 C -0.123 4.123 27 H 0.086 0.914 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.729 -19.155 1.664 21.115 hybrid contribution 0.321 0.847 0.069 0.908 sum -8.408 -18.308 1.733 20.220 Atomic orbital electron populations 1.69958 1.04939 1.25142 1.56484 1.24814 0.95641 0.97775 1.02171 0.86161 0.78732 0.83527 0.77597 1.21583 1.21614 1.20683 1.19023 0.91079 0.82755 1.42824 0.90652 1.44342 1.09331 0.99878 1.78872 1.21279 0.95955 0.86358 0.95187 1.21799 0.97061 0.93135 0.99801 0.91840 1.21702 1.00618 0.94723 0.99458 1.22326 0.80114 1.00595 0.97442 1.48085 1.14742 1.09349 1.61965 1.20188 0.88696 0.82556 0.77489 1.90723 1.60946 1.34261 1.55186 1.20141 0.95543 0.91593 1.02892 1.21521 1.03705 0.96355 0.82596 1.21505 1.06759 0.92800 1.00721 1.21783 1.07540 1.00557 0.93454 1.23994 1.03278 0.82934 1.00507 1.84001 1.66256 1.26234 1.30238 1.20656 0.94535 0.85195 1.01536 1.21509 0.99742 0.95769 0.99868 1.22239 0.93478 0.98002 0.98554 0.91389 1.21062 0.86130 0.89905 0.97575 0.93762 0.94245 0.96837 0.91658 0.90736 0.90284 0.89467 0.86841 0.85871 0.83646 0.83534 0.78172 0.91000 0.91682 0.90446 0.91003 0.95114 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.70 55.49 0.59 -25.95 16 2 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 3 Si 0.91 21.88 29.56 -169.99 -5.03 16.86 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 N -0.60 -15.04 3.37 -171.60 -0.58 -15.62 16 10 C 0.14 2.83 6.71 -3.37 -0.02 2.81 16 11 C -0.10 -1.60 2.61 -90.14 -0.24 -1.83 16 12 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.13 -1.74 4.57 -27.67 -0.13 -1.87 16 14 C 0.12 1.43 6.26 -2.16 -0.01 1.42 16 15 N -0.61 -7.23 2.67 -174.53 -0.47 -7.70 16 16 C 0.52 6.75 7.76 -10.99 -0.09 6.66 16 17 O -0.53 -8.98 15.73 5.56 0.09 -8.89 16 18 C -0.06 -0.60 4.64 -29.03 -0.13 -0.74 16 19 C 0.01 0.10 5.81 -35.62 -0.21 -0.10 16 20 C -0.20 -2.17 10.81 -39.71 -0.43 -2.60 16 21 C -0.21 -2.11 10.91 -39.71 -0.43 -2.55 16 22 C -0.04 -0.39 12.09 29.42 0.36 -0.03 16 23 O -0.17 -2.15 10.65 5.70 0.06 -2.09 16 24 C 0.10 1.11 5.60 -6.73 -0.04 1.07 16 25 C -0.13 -1.79 4.51 -28.48 -0.13 -1.92 16 26 C -0.10 -1.72 3.14 -89.56 -0.28 -2.00 16 27 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 28 C 0.18 4.09 4.99 -3.46 -0.02 4.07 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.01 0.29 7.96 -51.92 -0.41 -0.12 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.11 5.58 -51.93 -0.29 0.82 16 34 H 0.08 0.89 7.85 -51.93 -0.41 0.49 16 35 H 0.09 1.12 7.31 -51.93 -0.38 0.74 16 36 H 0.11 0.94 7.85 -51.93 -0.41 0.54 16 37 H 0.12 0.82 7.90 -51.93 -0.41 0.41 16 38 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.07 0.58 6.01 -51.93 -0.31 0.27 16 42 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 43 H 0.08 1.06 7.66 -51.93 -0.40 0.67 16 44 H 0.07 1.08 5.78 -51.93 -0.30 0.78 16 45 H 0.03 0.77 7.14 -51.93 -0.37 0.40 16 46 H 0.06 1.47 7.13 -51.93 -0.37 1.10 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.77 358.47 -8.92 -42.68 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.95 Total: -0.32 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.04 Total: -4.38 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.45 Total: -49.26 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.15 Total: -10.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.77 -8.92 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946829095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.091 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds