Wall clock time and date at job start Tue Mar 31 2020 12:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00508 * 2 1 4 4 H 1.48495 * 109.47195 * 270.00007 * 3 2 1 5 5 H 1.48501 * 109.46869 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.99975 * 3 2 1 7 7 C 1.38818 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99850 * 170.57993 * 7 2 1 9 9 N 1.36933 * 120.00027 * 350.58699 * 7 2 1 10 10 C 1.47175 * 126.10001 * 170.01738 * 9 7 2 11 11 C 1.53583 * 105.65433 * 149.71621 * 10 9 7 12 12 H 1.08994 * 108.72873 * 271.01209 * 11 10 9 13 13 C 1.50962 * 111.30538 * 150.28571 * 11 10 9 14 14 C 1.53170 * 111.95652 * 178.50499 * 13 11 10 15 15 N 1.49727 * 105.59760 * 99.83712 * 14 13 11 16 16 C 1.34774 * 122.75581 * 111.59251 * 15 14 13 17 17 O 1.21274 * 120.00194 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99514 * 180.02562 * 16 15 14 19 19 C 1.50709 * 109.46836 * 179.97438 * 18 16 15 20 20 C 1.34510 * 125.79272 * 90.00192 * 19 18 16 21 21 C 1.41375 * 106.84038 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.84438 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.41952 * 359.97438 * 22 21 20 24 24 C 1.43640 * 114.48342 * 291.85774 * 15 14 13 25 25 C 1.50667 * 115.03458 * 57.68666 * 24 15 14 26 26 C 1.51858 * 112.40243 * 275.15242 * 25 24 15 27 27 H 1.09002 * 110.94785 * 323.20587 * 26 25 24 28 28 C 1.46772 * 126.10012 * 349.98323 * 9 7 2 29 29 H 0.97002 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.21388 * 30.66369 * 10 9 7 31 31 H 1.09009 * 110.20713 * 268.75928 * 10 9 7 32 32 H 1.09004 * 108.98266 * 57.87183 * 13 11 10 33 33 H 1.08995 * 108.98778 * 299.14663 * 13 11 10 34 34 H 1.09004 * 110.21617 * 340.81848 * 14 13 11 35 35 H 1.09000 * 110.32993 * 218.91747 * 14 13 11 36 36 H 1.08999 * 109.47776 * 59.99457 * 18 16 15 37 37 H 1.09001 * 109.47247 * 299.99269 * 18 16 15 38 38 H 1.08007 * 126.57631 * 359.97438 * 20 19 18 39 39 H 1.08002 * 126.57703 * 179.97438 * 21 20 19 40 40 H 1.08003 * 125.79080 * 179.74146 * 22 21 20 41 41 H 1.09004 * 108.42536 * 179.09474 * 24 15 14 42 42 H 1.09002 * 108.42657 * 296.35164 * 24 15 14 43 43 H 1.09000 * 108.94228 * 154.34431 * 25 24 15 44 44 H 1.09004 * 108.71304 * 35.80158 * 25 24 15 45 45 H 1.09001 * 109.77750 * 80.70795 * 28 9 7 46 46 H 1.08995 * 109.80585 * 319.93858 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0792 -1.2085 -0.1536 9 7 1.3392 -2.3802 0.1929 10 6 1.8925 -3.7324 0.0160 11 6 1.1390 -4.6225 1.0154 12 1 1.6732 -4.6119 1.9654 13 6 1.0315 -6.0420 0.5129 14 6 0.3143 -6.9515 1.5153 15 7 -1.0920 -7.0712 1.0156 16 6 -1.5963 -8.2208 0.5252 17 8 -0.9029 -9.2145 0.4750 18 6 -3.0215 -8.2712 0.0382 19 6 -3.3345 -9.6599 -0.4566 20 6 -3.8299 -10.6664 0.2855 21 6 -3.9673 -11.7801 -0.5744 22 6 -3.5483 -11.3875 -1.7907 23 8 -3.1670 -10.1020 -1.7137 24 6 -1.8577 -5.8586 1.0964 25 6 -1.2701 -4.6833 0.3592 26 6 -0.2422 -3.9347 1.1892 27 1 -0.5350 -3.9058 2.2388 28 6 -0.0598 -2.5194 0.6143 29 1 -0.4850 0.8401 0.0004 30 1 2.9594 -3.7350 0.2392 31 1 1.7194 -4.0798 -1.0027 32 1 2.0336 -6.4319 0.3345 33 1 0.4791 -6.0448 -0.4266 34 1 0.3244 -6.5003 2.5075 35 1 0.7888 -7.9324 1.5434 36 1 -3.1530 -7.5577 -0.7753 37 1 -3.6945 -8.0166 0.8570 38 1 -4.0748 -10.6308 1.3369 39 1 -4.3377 -12.7585 -0.3061 40 1 -3.5195 -12.0027 -2.6779 41 1 -2.8526 -6.0520 0.6951 42 1 -1.9613 -5.5858 2.1466 43 1 -2.0732 -3.9976 0.0890 44 1 -0.7932 -5.0448 -0.5518 45 1 -0.7187 -2.3820 -0.2431 46 1 -0.2906 -1.7781 1.3793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946829095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:10 Heat of formation + Delta-G solvation = -6.811265 kcal Electronic energy + Delta-G solvation = -27057.553255 eV Core-core repulsion = 23334.912265 eV Total energy + Delta-G solvation = -3722.640990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.46372 -41.46489 -39.87237 -37.30214 -34.94888 -34.14947 -33.58160 -32.98452 -32.36860 -29.21199 -29.06778 -27.77772 -25.97345 -24.16778 -23.79353 -22.65717 -22.12590 -21.64929 -20.31993 -19.68433 -18.87943 -18.40455 -18.21547 -17.04329 -16.85148 -16.70959 -16.48900 -16.23606 -15.65414 -15.21346 -15.08844 -14.76915 -14.57607 -14.31315 -13.94292 -13.77745 -13.70796 -13.66948 -13.51185 -13.21305 -13.11200 -12.96033 -12.72220 -12.68057 -12.36503 -12.26961 -12.08468 -11.83492 -11.73747 -11.34184 -11.17401 -10.96962 -10.92875 -10.78550 -10.63704 -9.65612 -9.36047 -8.86218 -7.88099 -5.21573 0.77851 1.45728 1.46832 1.55994 1.56273 1.68694 1.98471 2.26266 2.49620 3.30467 3.56806 3.63586 3.73442 3.80292 3.91685 4.00999 4.08248 4.16337 4.16535 4.19330 4.31685 4.38099 4.46075 4.53753 4.65321 4.70568 4.74366 4.82511 4.91098 4.92608 5.00671 5.03821 5.04018 5.09794 5.18922 5.24020 5.28118 5.34692 5.45500 5.53912 5.58434 5.65099 5.79429 5.82461 6.22872 6.23414 6.50823 7.10992 7.11380 7.78978 8.46532 9.24030 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032442 B = 0.002539 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.883119 B =11025.876741 C =11298.798241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.624 5.624 10 C 0.133 3.867 11 C -0.082 4.082 12 H 0.072 0.928 13 C -0.116 4.116 14 C 0.119 3.881 15 N -0.604 5.604 16 C 0.522 3.478 17 O -0.579 6.579 18 C -0.058 4.058 19 C -0.017 4.017 20 C -0.209 4.209 21 C -0.227 4.227 22 C -0.047 4.047 23 O -0.196 6.196 24 C 0.107 3.893 25 C -0.122 4.122 26 C -0.091 4.091 27 H 0.088 0.912 28 C 0.187 3.813 29 H 0.248 0.752 30 H 0.040 0.960 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.057 0.943 45 H -0.001 1.001 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -20.353 2.849 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.007 3.993 11 C -0.102 4.102 12 H 0.090 0.910 13 C -0.154 4.154 14 C -0.002 4.002 15 N -0.337 5.337 16 C 0.311 3.689 17 O -0.459 6.459 18 C -0.097 4.097 19 C -0.067 4.067 20 C -0.229 4.229 21 C -0.246 4.246 22 C -0.114 4.114 23 O -0.093 6.093 24 C -0.016 4.016 25 C -0.160 4.160 26 C -0.111 4.111 27 H 0.106 0.894 28 C 0.061 3.939 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.249 0.751 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.017 0.983 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.474 -20.491 2.570 22.721 hybrid contribution 0.601 1.236 -0.274 1.401 sum -8.873 -19.255 2.296 21.325 Atomic orbital electron populations 1.70153 1.06234 1.25447 1.57524 1.25635 0.96558 1.00969 1.02466 0.85136 0.77763 0.79288 0.77469 1.21343 1.21749 1.19581 1.19387 0.91505 0.84222 1.42353 0.90614 1.44689 1.10316 1.00910 1.78969 1.21470 0.96550 0.85162 0.96102 1.21665 0.96051 0.93624 0.98814 0.91003 1.21580 1.01270 0.93242 0.99323 1.22270 0.80404 0.99920 0.97627 1.48118 1.14592 1.09589 1.61357 1.20737 0.89677 0.81941 0.76522 1.90703 1.62352 1.35858 1.57005 1.20272 0.93851 0.91158 1.04387 1.21957 1.04593 0.97539 0.82622 1.21871 1.06380 0.93038 1.01563 1.22166 1.07622 1.01398 0.93428 1.24744 1.02355 0.82356 1.01908 1.83986 1.66892 1.27477 1.30960 1.20663 0.95359 0.83263 1.02310 1.21382 0.98739 0.96791 0.99101 1.22121 0.94894 0.94315 0.99741 0.89418 1.20903 0.84695 0.92880 0.95385 0.94280 0.94131 0.97454 0.91008 0.91834 0.88558 0.89949 0.85395 0.82416 0.82250 0.81405 0.75066 0.87618 0.89851 0.90555 0.92428 0.98270 0.96242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 10.70 21.65 0.23 -56.11 16 2 C -0.06 -3.57 5.41 84.86 0.46 -3.11 16 3 Si 0.98 45.66 29.56 68.60 2.03 47.68 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.25 -13.89 10.26 84.04 0.86 -13.02 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 N -0.62 -32.03 3.37 -696.82 -2.35 -34.38 16 10 C 0.13 5.44 6.71 86.45 0.58 6.02 16 11 C -0.08 -2.56 2.61 -10.48 -0.03 -2.59 16 12 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 13 C -0.12 -2.99 4.57 29.99 0.14 -2.85 16 14 C 0.12 2.64 6.26 85.81 0.54 3.18 16 15 N -0.60 -12.68 2.67 -824.50 -2.21 -14.88 16 16 C 0.52 12.32 7.76 87.66 0.68 13.00 16 17 O -0.58 -18.86 15.73 -3.01 -0.05 -18.91 16 18 C -0.06 -0.96 4.64 29.10 0.14 -0.83 16 19 C -0.02 -0.37 5.81 24.83 0.14 -0.23 16 20 C -0.21 -4.22 10.81 22.19 0.24 -3.98 16 21 C -0.23 -4.11 10.91 22.19 0.24 -3.87 16 22 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 23 O -0.20 -4.73 10.65 -2.51 -0.03 -4.76 16 24 C 0.11 1.89 5.60 86.15 0.48 2.37 16 25 C -0.12 -3.13 4.51 29.46 0.13 -3.00 16 26 C -0.09 -2.95 3.14 -10.11 -0.03 -2.98 16 27 H 0.09 2.53 7.76 -2.39 -0.02 2.51 16 28 C 0.19 8.78 4.99 86.61 0.43 9.21 16 29 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.01 0.32 7.96 -2.38 -0.02 0.30 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.81 5.58 -2.39 -0.01 1.80 16 34 H 0.10 1.84 7.85 -2.39 -0.02 1.82 16 35 H 0.08 1.97 7.31 -2.39 -0.02 1.95 16 36 H 0.13 1.75 7.85 -2.39 -0.02 1.73 16 37 H 0.16 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.11 1.23 6.01 -2.39 -0.01 1.21 16 42 H 0.08 1.27 7.70 -2.39 -0.02 1.25 16 43 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 44 H 0.06 1.66 5.78 -2.39 -0.01 1.65 16 45 H 0.00 -0.04 7.14 -2.39 -0.02 -0.05 16 46 H 0.02 1.03 7.13 -2.39 -0.02 1.01 16 Total: -1.00 -76.63 358.47 4.42 -72.21 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.98 Total: 11.85 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.82 Total: -2.70 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -4.32 Total: -105.37 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.63 4.42 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946829095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.400 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds