Wall clock time and date at job start Tue Mar 31 2020 12:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48504 * 109.47189 * 274.92136 * 3 2 1 5 5 H 1.48495 * 109.46991 * 34.92247 * 3 2 1 6 6 H 1.48500 * 109.47358 * 154.92014 * 3 2 1 7 7 C 1.38817 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00607 * 153.52904 * 7 2 1 9 9 N 1.36942 * 119.99552 * 333.53080 * 7 2 1 10 10 C 1.46926 * 120.64120 * 150.12868 * 9 7 2 11 11 C 1.53186 * 108.77570 * 126.37568 * 10 9 7 12 12 C 1.53052 * 109.33428 * 54.63314 * 11 10 9 13 13 C 1.53023 * 109.54959 * 298.69238 * 12 11 10 14 14 C 1.46931 * 120.64033 * 330.14672 * 9 7 2 15 15 C 1.53034 * 109.43744 * 58.70695 * 12 11 10 16 16 C 1.53190 * 109.33552 * 181.23271 * 15 12 11 17 17 N 1.46940 * 108.77822 * 305.37744 * 16 15 12 18 18 C 1.34774 * 120.63874 * 233.61523 * 17 16 15 19 19 O 1.21700 * 120.00224 * 6.30903 * 18 17 16 20 20 C 1.46661 * 119.99925 * 186.30546 * 18 17 16 21 21 C 1.36538 * 125.98962 * 187.21373 * 20 18 17 22 22 C 1.40369 * 106.70909 * 180.02562 * 21 20 18 23 23 C 1.35123 * 107.11292 * 359.97438 * 22 21 20 24 24 O 1.33930 * 108.77196 * 0.02562 * 23 22 21 25 25 C 1.46929 * 118.71444 * 53.88845 * 17 16 15 26 26 C 1.53039 * 109.39197 * 178.73133 * 12 11 10 27 27 H 0.97005 * 120.00176 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58579 * 6.59076 * 10 9 7 29 29 H 1.08999 * 109.70274 * 246.23395 * 10 9 7 30 30 H 1.08998 * 109.49534 * 294.67558 * 11 10 9 31 31 H 1.08996 * 109.49555 * 174.58885 * 11 10 9 32 32 H 1.09000 * 109.49402 * 181.25862 * 13 12 11 33 33 H 1.08996 * 109.49340 * 301.34196 * 13 12 11 34 34 H 1.08998 * 109.58763 * 353.40474 * 14 9 7 35 35 H 1.09003 * 109.58462 * 113.68878 * 14 9 7 36 36 H 1.08998 * 109.49687 * 61.27507 * 15 12 11 37 37 H 1.09005 * 109.49207 * 301.18603 * 15 12 11 38 38 H 1.08994 * 109.58796 * 185.58496 * 16 15 12 39 39 H 1.09003 * 109.70401 * 65.22648 * 16 15 12 40 40 H 1.08000 * 126.64465 * 0.05589 * 21 20 18 41 41 H 1.07996 * 126.43988 * 179.97438 * 22 21 20 42 42 H 1.08004 * 125.61803 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.58359 * 65.88618 * 25 17 16 44 44 H 1.09003 * 109.58701 * 186.31317 * 25 17 16 45 45 H 1.09005 * 109.49696 * 298.68127 * 26 12 11 46 46 H 1.08999 * 109.50003 * 58.76648 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3936 2.1064 -1.3949 5 1 1.5035 2.6203 0.8015 6 1 3.5958 1.4123 0.5935 7 6 2.0102 -1.2022 -0.0005 8 1 3.0052 -1.2511 -0.4174 9 7 1.4331 -2.3262 0.5276 10 6 1.7741 -3.6576 0.0082 11 6 2.2170 -4.5440 1.1764 12 6 1.1268 -4.5488 2.2506 13 6 0.9181 -3.1264 2.7747 14 6 0.4607 -2.2239 1.6243 15 6 -0.1806 -5.0668 1.6470 16 6 -1.2777 -5.0416 2.7158 17 7 -0.8136 -5.7965 3.8879 18 6 -1.5571 -6.7979 4.3985 19 8 -2.5662 -7.1610 3.8232 20 6 -1.1502 -7.4501 5.6475 21 6 -1.7270 -8.5579 6.1991 22 6 -1.0244 -8.8317 7.3830 23 6 -0.0613 -7.8912 7.5004 24 8 -0.1404 -7.0604 6.4529 25 6 0.4740 -5.4344 4.4962 26 6 1.5542 -5.4591 3.4042 27 1 -0.4850 0.8401 0.0004 28 1 2.5864 -3.5713 -0.7135 29 1 0.9017 -4.0982 -0.4745 30 1 3.1425 -4.1529 1.5992 31 1 2.3807 -5.5608 0.8198 32 1 0.1573 -3.1343 3.5553 33 1 1.8551 -2.7481 3.1832 34 1 0.4063 -1.1914 1.9694 35 1 -0.5205 -2.5443 1.2738 36 1 -0.0391 -6.0886 1.2950 37 1 -0.4724 -4.4308 0.8112 38 1 -2.1836 -5.5011 2.3205 39 1 -1.4865 -4.0113 3.0040 40 1 -2.5618 -9.1158 5.8012 41 1 -1.2173 -9.6418 8.0707 42 1 0.6544 -7.8210 8.3061 43 1 0.4070 -4.4346 4.9253 44 1 0.7245 -6.1532 5.2764 45 1 1.6800 -6.4775 3.0366 46 1 2.4971 -5.1026 3.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957492298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:47 Heat of formation + Delta-G solvation = 12.022512 kcal Electronic energy + Delta-G solvation = -27966.934526 eV Core-core repulsion = 24245.110230 eV Total energy + Delta-G solvation = -3721.824296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.97670 -40.36988 -38.65021 -36.01068 -33.72842 -33.21834 -31.36590 -31.30792 -29.99158 -29.84879 -27.99420 -25.18430 -24.15324 -23.20749 -22.51063 -21.95470 -21.86916 -20.66036 -19.92841 -18.13566 -17.46294 -16.94944 -16.55924 -16.30511 -15.92115 -15.01828 -14.77063 -14.35337 -14.21781 -14.07634 -13.74215 -13.62794 -13.48313 -13.34394 -13.23793 -12.98798 -12.78876 -12.62980 -11.99713 -11.52063 -11.47947 -11.43616 -11.21040 -11.05117 -10.69006 -10.55403 -10.43418 -10.31503 -10.26627 -10.03949 -10.02366 -9.72327 -9.56752 -9.33394 -9.00050 -8.51787 -8.38031 -6.64558 -5.81519 -3.18276 0.87208 2.11510 2.41851 2.98693 3.11074 3.36902 3.45633 3.48972 4.29579 4.51531 4.62712 4.69255 4.92781 5.00809 5.04952 5.25616 5.29762 5.34589 5.39089 5.47978 5.48649 5.53260 5.65275 5.77396 5.85281 5.91538 5.94281 6.04511 6.06321 6.07960 6.16243 6.20135 6.33344 6.37498 6.51508 6.53794 6.60709 6.67421 6.74711 6.83199 6.90810 7.00747 7.26591 7.32984 7.54085 7.84149 7.97333 8.44986 9.20216 9.85964 10.45522 11.26148 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.003113 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.235405 B = 8991.633825 C = 9090.793461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.010 3.990 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.062 0.938 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.047 4.047 13 C -0.133 4.133 14 C 0.174 3.826 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.594 5.594 18 C 0.597 3.403 19 O -0.528 6.528 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.224 4.224 23 C -0.019 4.019 24 O -0.156 6.156 25 C 0.094 3.906 26 C -0.122 4.122 27 H 0.253 0.747 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.208 0.792 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -15.955 14.647 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.018 3.982 11 C -0.160 4.160 12 C -0.048 4.048 13 C -0.172 4.172 14 C 0.048 3.952 15 C -0.161 4.161 16 C -0.010 4.010 17 N -0.326 5.326 18 C 0.385 3.615 19 O -0.407 6.407 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.243 4.243 23 C -0.088 4.088 24 O -0.052 6.052 25 C -0.028 4.028 26 C -0.160 4.160 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.224 0.776 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.250 -15.708 14.223 21.192 hybrid contribution 0.446 0.733 0.254 0.895 sum 0.697 -14.976 14.477 20.841 Atomic orbital electron populations 1.70161 1.05444 1.25640 1.51935 1.24968 0.94900 0.98565 1.00592 0.86498 0.79722 0.84257 0.77652 1.21485 1.21568 1.20394 1.19055 0.96477 0.86698 1.36749 0.91998 1.44005 1.50025 1.00662 1.36415 1.20922 0.97375 0.86721 0.93148 1.22038 0.97628 0.98906 0.97440 1.20397 0.94889 0.95118 0.94370 1.22302 1.00688 0.94707 0.99476 1.20666 0.90945 0.97782 0.85797 1.22029 0.94477 1.01373 0.98257 1.21815 0.98294 0.96044 0.84852 1.48067 1.20742 1.33004 1.30753 1.16719 0.83396 0.79513 0.81901 1.90863 1.25960 1.63968 1.59883 1.22191 0.93792 1.00462 0.95721 1.21967 1.01109 0.96239 0.95271 1.21839 0.99184 1.03130 1.00166 1.24539 1.01433 0.91283 0.91555 1.84287 1.43905 1.47746 1.29253 1.22358 0.82247 1.02039 0.96125 1.22084 0.97695 1.00163 0.96071 0.93723 0.93074 0.96346 0.92312 0.93348 0.93169 0.92542 0.91273 0.95990 0.92330 0.88973 0.89190 0.90373 0.82349 0.82761 0.77555 0.90589 0.88278 0.92066 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.00 55.49 0.67 -24.92 16 2 C 0.01 0.27 4.62 -17.43 -0.08 0.19 16 3 Si 0.89 21.40 29.63 -169.99 -5.04 16.36 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.26 -7.06 9.48 -15.05 -0.14 -7.20 16 8 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 9 N -0.59 -14.22 2.97 -172.31 -0.51 -14.74 16 10 C 0.14 2.94 6.04 -3.71 -0.02 2.92 16 11 C -0.12 -2.00 4.90 -26.61 -0.13 -2.13 16 12 C -0.05 -0.73 0.51 -154.43 -0.08 -0.81 16 13 C -0.13 -2.32 4.15 -26.62 -0.11 -2.43 16 14 C 0.17 3.90 4.92 -3.70 -0.02 3.88 16 15 C -0.12 -1.91 4.15 -26.62 -0.11 -2.02 16 16 C 0.11 1.66 5.97 -3.70 -0.02 1.64 16 17 N -0.59 -8.33 2.97 -174.04 -0.52 -8.84 16 18 C 0.60 8.87 7.65 -12.86 -0.10 8.77 16 19 O -0.53 -9.25 16.30 5.19 0.08 -9.17 16 20 C -0.07 -0.87 6.78 -36.80 -0.25 -1.12 16 21 C -0.13 -1.35 10.63 -39.39 -0.42 -1.77 16 22 C -0.22 -1.80 10.87 -39.89 -0.43 -2.23 16 23 C -0.02 -0.14 12.08 29.62 0.36 0.22 16 24 O -0.16 -1.62 7.21 4.99 0.04 -1.58 16 25 C 0.09 1.15 5.70 -3.49 -0.02 1.13 16 26 C -0.12 -1.55 4.92 -26.39 -0.13 -1.68 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 29 H 0.02 0.38 6.67 -51.93 -0.35 0.04 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.80 4.98 -51.93 -0.26 0.55 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.76 6.51 -51.93 -0.34 1.43 16 35 H 0.02 0.52 6.74 -51.93 -0.35 0.17 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.63 4.99 -51.93 -0.26 1.37 16 38 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 39 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 40 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.08 0.92 6.66 -51.93 -0.35 0.58 16 44 H 0.10 1.10 4.16 -53.48 -0.22 0.88 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.29 347.42 -8.35 -39.65 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.60 Total: 0.65 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.71 Total: -2.65 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.36 Total: -48.50 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.12 Total: -10.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.29 -8.35 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957492298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.671 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds