Wall clock time and date at job start Tue Mar 31 2020 12:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48504 * 109.47189 * 274.92136 * 3 2 1 5 5 H 1.48495 * 109.46991 * 34.92247 * 3 2 1 6 6 H 1.48500 * 109.47358 * 154.92014 * 3 2 1 7 7 C 1.38817 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00607 * 153.52904 * 7 2 1 9 9 N 1.36942 * 119.99552 * 333.53080 * 7 2 1 10 10 C 1.46926 * 120.64120 * 150.12868 * 9 7 2 11 11 C 1.53186 * 108.77570 * 126.37568 * 10 9 7 12 12 C 1.53052 * 109.33428 * 54.63314 * 11 10 9 13 13 C 1.53023 * 109.54959 * 298.69238 * 12 11 10 14 14 C 1.46931 * 120.64033 * 330.14672 * 9 7 2 15 15 C 1.53034 * 109.43744 * 58.70695 * 12 11 10 16 16 C 1.53190 * 109.33552 * 181.23271 * 15 12 11 17 17 N 1.46940 * 108.77822 * 305.37744 * 16 15 12 18 18 C 1.34774 * 120.63874 * 233.61523 * 17 16 15 19 19 O 1.21700 * 120.00224 * 6.30903 * 18 17 16 20 20 C 1.46661 * 119.99925 * 186.30546 * 18 17 16 21 21 C 1.36538 * 125.98962 * 187.21373 * 20 18 17 22 22 C 1.40369 * 106.70909 * 180.02562 * 21 20 18 23 23 C 1.35123 * 107.11292 * 359.97438 * 22 21 20 24 24 O 1.33930 * 108.77196 * 0.02562 * 23 22 21 25 25 C 1.46929 * 118.71444 * 53.88845 * 17 16 15 26 26 C 1.53039 * 109.39197 * 178.73133 * 12 11 10 27 27 H 0.97005 * 120.00176 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58579 * 6.59076 * 10 9 7 29 29 H 1.08999 * 109.70274 * 246.23395 * 10 9 7 30 30 H 1.08998 * 109.49534 * 294.67558 * 11 10 9 31 31 H 1.08996 * 109.49555 * 174.58885 * 11 10 9 32 32 H 1.09000 * 109.49402 * 181.25862 * 13 12 11 33 33 H 1.08996 * 109.49340 * 301.34196 * 13 12 11 34 34 H 1.08998 * 109.58763 * 353.40474 * 14 9 7 35 35 H 1.09003 * 109.58462 * 113.68878 * 14 9 7 36 36 H 1.08998 * 109.49687 * 61.27507 * 15 12 11 37 37 H 1.09005 * 109.49207 * 301.18603 * 15 12 11 38 38 H 1.08994 * 109.58796 * 185.58496 * 16 15 12 39 39 H 1.09003 * 109.70401 * 65.22648 * 16 15 12 40 40 H 1.08000 * 126.64465 * 0.05589 * 21 20 18 41 41 H 1.07996 * 126.43988 * 179.97438 * 22 21 20 42 42 H 1.08004 * 125.61803 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.58359 * 65.88618 * 25 17 16 44 44 H 1.09003 * 109.58701 * 186.31317 * 25 17 16 45 45 H 1.09005 * 109.49696 * 298.68127 * 26 12 11 46 46 H 1.08999 * 109.50003 * 58.76648 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3936 2.1064 -1.3949 5 1 1.5035 2.6203 0.8015 6 1 3.5958 1.4123 0.5935 7 6 2.0102 -1.2022 -0.0005 8 1 3.0052 -1.2511 -0.4174 9 7 1.4331 -2.3262 0.5276 10 6 1.7741 -3.6576 0.0082 11 6 2.2170 -4.5440 1.1764 12 6 1.1268 -4.5488 2.2506 13 6 0.9181 -3.1264 2.7747 14 6 0.4607 -2.2239 1.6243 15 6 -0.1806 -5.0668 1.6470 16 6 -1.2777 -5.0416 2.7158 17 7 -0.8136 -5.7965 3.8879 18 6 -1.5571 -6.7979 4.3985 19 8 -2.5662 -7.1610 3.8232 20 6 -1.1502 -7.4501 5.6475 21 6 -1.7270 -8.5579 6.1991 22 6 -1.0244 -8.8317 7.3830 23 6 -0.0613 -7.8912 7.5004 24 8 -0.1404 -7.0604 6.4529 25 6 0.4740 -5.4344 4.4962 26 6 1.5542 -5.4591 3.4042 27 1 -0.4850 0.8401 0.0004 28 1 2.5864 -3.5713 -0.7135 29 1 0.9017 -4.0982 -0.4745 30 1 3.1425 -4.1529 1.5992 31 1 2.3807 -5.5608 0.8198 32 1 0.1573 -3.1343 3.5553 33 1 1.8551 -2.7481 3.1832 34 1 0.4063 -1.1914 1.9694 35 1 -0.5205 -2.5443 1.2738 36 1 -0.0391 -6.0886 1.2950 37 1 -0.4724 -4.4308 0.8112 38 1 -2.1836 -5.5011 2.3205 39 1 -1.4865 -4.0113 3.0040 40 1 -2.5618 -9.1158 5.8012 41 1 -1.2173 -9.6418 8.0707 42 1 0.6544 -7.8210 8.3061 43 1 0.4070 -4.4346 4.9253 44 1 0.7245 -6.1532 5.2764 45 1 1.6800 -6.4775 3.0366 46 1 2.4971 -5.1026 3.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957492298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:46 Heat of formation + Delta-G solvation = -6.346206 kcal Electronic energy + Delta-G solvation = -27967.731053 eV Core-core repulsion = 24245.110230 eV Total energy + Delta-G solvation = -3722.620823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.71009 -41.57734 -39.93161 -37.45727 -35.24358 -34.04737 -33.05972 -32.46990 -31.60584 -30.80040 -29.41965 -26.77725 -25.38326 -24.57674 -23.84110 -23.20118 -22.68070 -21.95248 -21.02638 -19.46892 -18.79752 -18.11088 -17.65815 -17.39661 -16.92775 -16.78368 -16.03349 -15.83571 -15.59906 -15.28787 -15.12480 -14.94721 -14.87245 -14.61911 -14.21127 -14.09766 -14.03298 -13.56789 -13.24495 -13.13568 -12.99417 -12.90472 -12.78514 -12.53195 -12.28215 -12.18839 -12.03201 -11.75402 -11.71528 -11.38646 -11.13840 -11.10020 -10.97910 -10.86855 -10.46649 -9.87778 -9.50625 -8.63570 -7.88717 -5.28741 0.03885 1.44358 1.45419 1.47687 1.57140 1.57771 2.01795 2.14443 2.52330 3.22458 3.44756 3.72591 3.79059 3.80047 3.85122 3.98116 4.10072 4.12720 4.26127 4.31204 4.43692 4.55163 4.58525 4.63115 4.69472 4.73997 4.75842 4.81502 4.83052 4.94319 5.01192 5.02652 5.06820 5.11593 5.14233 5.31111 5.34929 5.38767 5.44067 5.44432 5.49120 5.59824 5.69845 5.79527 5.89755 6.28133 6.39636 6.89103 7.16077 7.89321 8.43400 9.16073 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.003113 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.235405 B = 8991.633825 C = 9090.793461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.042 4.042 3 Si 0.954 3.046 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.060 0.940 9 N -0.605 5.605 10 C 0.140 3.860 11 C -0.109 4.109 12 C -0.043 4.043 13 C -0.117 4.117 14 C 0.182 3.818 15 C -0.114 4.114 16 C 0.117 3.883 17 N -0.595 5.595 18 C 0.594 3.406 19 O -0.569 6.569 20 C -0.106 4.106 21 C -0.124 4.124 22 C -0.232 4.232 23 C 0.005 3.995 24 O -0.163 6.163 25 C 0.095 3.905 26 C -0.112 4.112 27 H 0.249 0.751 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.002 0.998 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.156 0.844 41 H 0.183 0.817 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -17.735 17.451 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.238 4.238 3 Si 0.782 3.218 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.399 4.399 8 H 0.078 0.922 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.148 4.148 12 C -0.043 4.043 13 C -0.155 4.155 14 C 0.057 3.943 15 C -0.152 4.152 16 C -0.005 4.005 17 N -0.325 5.325 18 C 0.384 3.616 19 O -0.451 6.451 20 C -0.157 4.157 21 C -0.145 4.145 22 C -0.251 4.251 23 C -0.063 4.063 24 O -0.059 6.059 25 C -0.026 4.026 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.020 0.980 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.173 0.827 41 H 0.200 0.800 42 H 0.270 0.730 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.449 -17.508 17.037 24.551 hybrid contribution -0.238 1.197 -0.584 1.353 sum 2.211 -16.311 16.453 23.273 Atomic orbital electron populations 1.70280 1.06856 1.25965 1.53800 1.25691 0.95589 1.01501 1.01068 0.85484 0.78657 0.80263 0.77389 1.21388 1.21867 1.19421 1.19364 0.96457 0.87999 1.36102 0.92201 1.44274 1.50084 1.01424 1.37117 1.21064 0.96908 0.85747 0.94828 1.21899 0.97689 0.99226 0.95978 1.20354 0.94387 0.94322 0.95280 1.22088 1.00808 0.94998 0.97645 1.20488 0.90111 0.96713 0.87020 1.21888 0.94803 1.01063 0.97479 1.21601 0.97804 0.95698 0.85416 1.48102 1.21416 1.32730 1.30265 1.17053 0.82817 0.79224 0.82546 1.90826 1.27612 1.65272 1.61385 1.21685 0.96141 1.01806 0.96071 1.22236 1.00766 0.95444 0.96089 1.22187 0.98975 1.04349 0.99578 1.25512 1.00918 0.89269 0.90644 1.84207 1.43309 1.48507 1.29888 1.22490 0.81010 1.02771 0.96314 1.22001 0.98494 0.99755 0.94755 0.94177 0.93609 0.97000 0.92125 0.90684 0.91657 0.92539 0.94997 0.98024 0.91548 0.91846 0.90327 0.91147 0.82655 0.79976 0.72952 0.90390 0.86380 0.91093 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 12.00 21.65 0.26 -54.93 16 2 C -0.04 -2.34 4.62 84.86 0.39 -1.95 16 3 Si 0.95 44.87 29.63 68.60 2.03 46.90 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.27 -14.86 9.48 84.03 0.80 -14.07 16 8 H 0.06 3.27 7.96 -2.91 -0.02 3.24 16 9 N -0.61 -29.96 2.97 -699.07 -2.08 -32.04 16 10 C 0.14 5.72 6.04 86.36 0.52 6.24 16 11 C -0.11 -3.41 4.90 30.67 0.15 -3.26 16 12 C -0.04 -1.26 0.51 -52.13 -0.03 -1.29 16 13 C -0.12 -4.02 4.15 30.67 0.13 -3.90 16 14 C 0.18 8.47 4.92 86.36 0.42 8.89 16 15 C -0.11 -3.54 4.15 30.67 0.13 -3.41 16 16 C 0.12 3.56 5.97 86.36 0.52 4.07 16 17 N -0.59 -16.21 2.97 -822.76 -2.44 -18.65 16 18 C 0.59 17.50 7.65 86.44 0.66 18.17 16 19 O -0.57 -20.53 16.30 -4.35 -0.07 -20.60 16 20 C -0.11 -2.47 6.78 24.07 0.16 -2.30 16 21 C -0.12 -2.47 10.63 22.39 0.24 -2.23 16 22 C -0.23 -2.86 10.87 22.07 0.24 -2.62 16 23 C 0.01 0.05 12.08 67.10 0.81 0.86 16 24 O -0.16 -2.84 7.21 -5.07 -0.04 -2.88 16 25 C 0.09 2.07 5.70 86.51 0.49 2.57 16 26 C -0.11 -2.48 4.92 30.82 0.15 -2.33 16 27 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 29 H 0.01 0.51 6.67 -2.39 -0.02 0.49 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.05 4.98 -2.39 -0.01 2.04 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.69 6.51 -2.39 -0.02 1.68 16 35 H 0.00 0.09 6.74 -2.39 -0.02 0.07 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.34 4.99 -2.38 -0.01 2.33 16 38 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 39 H 0.07 2.23 6.74 -2.39 -0.02 2.21 16 40 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.25 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.08 1.69 6.66 -2.39 -0.02 1.68 16 44 H 0.12 2.21 4.16 -27.03 -0.11 2.10 16 45 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.26 347.42 4.34 -66.92 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.89 Total: 11.83 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.79 Total: 3.45 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.26 Total: -105.63 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.11 Total: -23.47 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.26 4.34 -66.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957492298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.573 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds