Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38376 * 119.85467 * 2 1 4 4 C 1.37936 * 120.14775 * 180.02562 * 3 2 1 5 5 C 1.39587 * 119.85126 * 359.97438 * 4 3 2 6 6 C 1.47850 * 120.14410 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99932 * 179.97438 * 6 5 4 8 8 N 1.34775 * 119.99774 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.88599 * 302.57784 * 10 9 8 12 12 C 1.54908 * 111.00321 * 66.45747 * 10 9 8 13 13 N 1.47416 * 104.83435 * 155.08366 * 12 10 9 14 14 C 1.36935 * 125.65006 * 155.83740 * 13 12 10 15 15 H 1.08005 * 120.00050 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00322 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99391 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46758 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47114 * 119.99621 * 18 16 14 21 21 H 1.48497 * 109.47236 * 240.00371 * 18 16 14 22 22 C 1.47020 * 108.70399 * 335.86885 * 13 12 10 23 23 C 1.54325 * 107.27144 * 1.06255 * 22 13 12 24 24 H 1.08998 * 110.71905 * 263.83004 * 23 22 13 25 25 O 1.42896 * 110.72598 * 140.55038 * 23 22 13 26 26 C 1.39559 * 119.71599 * 0.25285 * 5 4 3 27 27 C 1.37983 * 119.84738 * 359.48711 * 26 5 4 28 28 C 1.50701 * 119.92757 * 180.25551 * 27 26 5 29 29 H 1.09004 * 109.47108 * 89.99698 * 1 2 3 30 30 H 1.09001 * 109.47217 * 209.99870 * 1 2 3 31 31 H 1.08997 * 109.47042 * 329.99983 * 1 2 3 32 32 H 1.08010 * 119.92552 * 0.02562 * 3 2 1 33 33 H 1.08006 * 120.07238 * 179.97438 * 4 3 2 34 34 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 36 36 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 37 37 H 1.09001 * 110.36572 * 273.92263 * 12 10 9 38 38 H 1.09006 * 110.36696 * 36.13079 * 12 10 9 39 39 H 0.97003 * 119.99602 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88229 * 120.47119 * 22 13 12 41 41 H 1.08995 * 109.88771 * 241.48762 * 22 13 12 42 42 H 0.96710 * 113.99517 * 66.48058 * 25 23 22 43 43 H 1.07994 * 120.07649 * 179.74980 * 26 5 4 44 44 H 1.09006 * 109.46657 * 270.27833 * 28 27 26 45 45 H 1.08994 * 109.47011 * 30.28196 * 28 27 26 46 46 H 1.08994 * 109.47106 * 150.28460 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0001 -0.0005 6 6 5.7547 0.0001 -0.0017 7 8 6.3624 -1.0526 -0.0012 8 7 6.4285 1.1673 -0.0022 9 6 7.8935 1.1672 -0.0028 10 6 8.4036 2.6098 -0.0039 11 1 8.0158 3.1584 -0.8623 12 6 8.0445 3.3267 1.3215 13 7 9.0525 4.3936 1.4586 14 6 8.8994 5.5485 2.1783 15 1 7.9769 5.7369 2.7073 16 6 9.9296 6.4777 2.2270 17 7 11.0537 6.2484 1.5818 18 14 9.7206 8.0535 3.2082 19 1 8.3746 8.0710 3.8355 20 1 10.7610 8.1198 4.2656 21 1 9.8594 9.2224 2.3029 22 6 10.2491 4.0128 0.6940 23 6 9.9542 2.6515 0.0295 24 1 10.3490 1.8342 0.6331 25 8 10.4897 2.6085 -1.2946 26 6 3.5754 -1.2068 -0.0053 27 6 2.1956 -1.1998 0.0007 28 6 1.4372 -2.5021 0.0013 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1334 0.0004 33 1 4.1116 2.1446 -0.0010 34 1 5.9436 2.0073 -0.0022 35 1 8.2565 0.6532 -0.8928 36 1 8.2572 0.6537 0.8872 37 1 7.0441 3.7553 1.2620 38 1 8.1094 2.6314 2.1585 39 1 11.7737 6.8975 1.6162 40 1 10.4542 4.7618 -0.0709 41 1 11.1042 3.9234 1.3638 42 1 11.4559 2.6320 -1.3290 43 1 4.1119 -2.1441 -0.0094 44 1 1.2542 -2.8164 -1.0263 45 1 2.0234 -3.2637 0.5154 46 1 0.4853 -2.3679 0.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958640292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = -44.076006 kcal Electronic energy + Delta-G solvation = -26115.033146 eV Core-core repulsion = 22390.776236 eV Total energy + Delta-G solvation = -3724.256910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40045 -38.99431 -38.10597 -35.19401 -34.69047 -33.73367 -32.38343 -32.16142 -29.82536 -28.12390 -27.64810 -26.86944 -25.41026 -23.67873 -22.34355 -22.13008 -20.51758 -20.11039 -19.60128 -17.77270 -16.98326 -16.67965 -16.31011 -15.53912 -15.41733 -15.18737 -15.00785 -14.56754 -14.56313 -14.13259 -13.87264 -13.68103 -13.24622 -13.12374 -13.10603 -12.87179 -12.67164 -12.45329 -12.27840 -12.10669 -11.86196 -11.58706 -11.47846 -11.26269 -11.19553 -10.98310 -10.85481 -10.59730 -10.09724 -10.02574 -9.85092 -9.76450 -9.23004 -9.09690 -9.00294 -8.76940 -8.68638 -6.92822 -5.78400 -3.12925 0.66792 1.12912 2.78056 3.18616 3.35880 3.41230 3.43850 3.69052 4.40946 4.45194 4.48310 4.60752 4.70029 4.78096 4.83074 4.99135 5.01902 5.17413 5.19688 5.24525 5.34306 5.42104 5.45845 5.48283 5.48509 5.52701 5.66292 5.79124 5.83714 5.86860 6.00028 6.02461 6.09847 6.16606 6.19808 6.32515 6.34085 6.41772 6.53651 6.68327 6.80075 7.37199 7.47180 7.54445 7.72531 8.16453 8.18341 8.23286 9.13187 9.73755 10.37984 11.33276 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002695 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.989112 B =10385.843063 C =11756.543584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.133 4.133 6 C 0.556 3.444 7 O -0.543 6.543 8 N -0.718 5.718 9 C 0.134 3.866 10 C -0.108 4.108 11 H 0.089 0.911 12 C 0.141 3.859 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.151 3.849 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.566 6.566 26 C -0.057 4.057 27 C -0.099 4.099 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.252 0.748 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.376 0.624 43 H 0.135 0.865 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 -13.558 -4.727 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.136 4.136 6 C 0.343 3.657 7 O -0.421 6.421 8 N -0.370 5.370 9 C 0.010 3.990 10 C -0.128 4.128 11 H 0.108 0.892 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.026 3.974 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.371 6.371 26 C -0.076 4.076 27 C -0.099 4.099 28 C -0.173 4.173 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.752 -14.124 -4.823 23.193 hybrid contribution 0.494 1.486 0.690 1.711 sum -17.259 -12.638 -4.133 21.787 Atomic orbital electron populations 1.20926 0.91040 1.03154 1.02610 1.19974 0.96216 0.92629 0.97776 1.20976 0.93856 0.97767 1.01593 1.21339 0.94564 0.97163 0.97446 1.19955 0.92934 0.94403 1.06322 1.18260 0.87027 0.83898 0.76479 1.90755 1.69929 1.31212 1.50251 1.45960 1.08006 1.08409 1.74591 1.21394 0.78260 0.96972 1.02361 1.22616 0.95414 0.94166 1.00611 0.89228 1.21604 0.93654 0.90607 0.92635 1.44311 1.12085 1.18499 1.58051 1.19112 1.00075 0.93653 1.22956 0.90199 1.24828 0.96222 0.98962 1.00443 1.69954 1.05170 1.35789 1.46032 0.86014 0.77348 0.83023 0.79184 1.20449 1.21698 1.21697 1.21831 0.90068 0.90504 0.94984 1.23116 0.92216 0.99129 0.83242 0.92503 1.86424 1.25575 1.97281 1.27832 1.21133 0.93059 0.97831 0.95602 1.19727 0.93352 0.95209 1.01579 1.20861 1.00025 0.93886 1.02524 0.90813 0.90916 0.91308 0.85331 0.85387 0.76336 0.91065 0.91261 0.94028 0.95855 0.93710 0.92409 0.93591 0.77705 0.84701 0.91020 0.91338 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.60 36.01 0.35 -0.37 16 2 C -0.07 -0.57 5.89 -104.53 -0.62 -1.19 16 3 C -0.12 -1.13 9.68 -39.64 -0.38 -1.51 16 4 C -0.09 -0.90 9.54 -39.19 -0.37 -1.27 16 5 C -0.13 -1.66 5.87 -104.97 -0.62 -2.28 16 6 C 0.56 8.28 7.77 -12.33 -0.10 8.19 16 7 O -0.54 -9.81 16.35 5.32 0.09 -9.72 16 8 N -0.72 -9.93 5.36 -61.25 -0.33 -10.26 16 9 C 0.13 2.06 5.12 -4.04 -0.02 2.04 16 10 C -0.11 -1.88 2.83 -88.47 -0.25 -2.13 16 11 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 12 C 0.14 2.79 6.41 -2.53 -0.02 2.77 16 13 N -0.60 -15.03 3.39 -170.08 -0.58 -15.61 16 14 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 15 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 18 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.15 3.59 5.15 -3.06 -0.02 3.57 16 23 C 0.08 1.55 3.80 -24.90 -0.09 1.46 16 24 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 25 O -0.57 -9.86 13.39 -35.23 -0.47 -10.33 16 26 C -0.06 -0.66 9.25 -39.18 -0.36 -1.03 16 27 C -0.10 -0.93 5.87 -104.68 -0.61 -1.55 16 28 C -0.12 -0.78 9.59 36.01 0.35 -0.43 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 5.93 -51.93 -0.31 0.05 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.13 1.13 6.41 -52.48 -0.34 0.79 16 34 H 0.40 4.77 6.37 -40.82 -0.26 4.51 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 41 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 42 H 0.38 5.08 9.12 45.56 0.42 5.49 16 43 H 0.14 1.57 7.65 -52.49 -0.40 1.17 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 46 H 0.07 0.38 5.93 -51.93 -0.31 0.07 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -33.57 373.22 -9.28 -42.85 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.14 Total: 7.26 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.02 Total: -0.48 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.33 Total: -51.97 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.38 Total: -20.06 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.57 -9.28 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958640292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.226 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds