Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38376 * 119.85467 * 2 1 4 4 C 1.37936 * 120.14775 * 180.02562 * 3 2 1 5 5 C 1.39587 * 119.85126 * 359.97438 * 4 3 2 6 6 C 1.47850 * 120.14410 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99932 * 179.97438 * 6 5 4 8 8 N 1.34775 * 119.99774 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.88599 * 302.57784 * 10 9 8 12 12 C 1.54908 * 111.00321 * 66.45747 * 10 9 8 13 13 N 1.47416 * 104.83435 * 155.08366 * 12 10 9 14 14 C 1.36935 * 125.65006 * 155.83740 * 13 12 10 15 15 H 1.08005 * 120.00050 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00322 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99391 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46758 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47114 * 119.99621 * 18 16 14 21 21 H 1.48497 * 109.47236 * 240.00371 * 18 16 14 22 22 C 1.47020 * 108.70399 * 335.86885 * 13 12 10 23 23 C 1.54325 * 107.27144 * 1.06255 * 22 13 12 24 24 H 1.08998 * 110.71905 * 263.83004 * 23 22 13 25 25 O 1.42896 * 110.72598 * 140.55038 * 23 22 13 26 26 C 1.39559 * 119.71599 * 0.25285 * 5 4 3 27 27 C 1.37983 * 119.84738 * 359.48711 * 26 5 4 28 28 C 1.50701 * 119.92757 * 180.25551 * 27 26 5 29 29 H 1.09004 * 109.47108 * 89.99698 * 1 2 3 30 30 H 1.09001 * 109.47217 * 209.99870 * 1 2 3 31 31 H 1.08997 * 109.47042 * 329.99983 * 1 2 3 32 32 H 1.08010 * 119.92552 * 0.02562 * 3 2 1 33 33 H 1.08006 * 120.07238 * 179.97438 * 4 3 2 34 34 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 36 36 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 37 37 H 1.09001 * 110.36572 * 273.92263 * 12 10 9 38 38 H 1.09006 * 110.36696 * 36.13079 * 12 10 9 39 39 H 0.97003 * 119.99602 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88229 * 120.47119 * 22 13 12 41 41 H 1.08995 * 109.88771 * 241.48762 * 22 13 12 42 42 H 0.96710 * 113.99517 * 66.48058 * 25 23 22 43 43 H 1.07994 * 120.07649 * 179.74980 * 26 5 4 44 44 H 1.09006 * 109.46657 * 270.27833 * 28 27 26 45 45 H 1.08994 * 109.47011 * 30.28196 * 28 27 26 46 46 H 1.08994 * 109.47106 * 150.28460 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0001 -0.0005 6 6 5.7547 0.0001 -0.0017 7 8 6.3624 -1.0526 -0.0012 8 7 6.4285 1.1673 -0.0022 9 6 7.8935 1.1672 -0.0028 10 6 8.4036 2.6098 -0.0039 11 1 8.0158 3.1584 -0.8623 12 6 8.0445 3.3267 1.3215 13 7 9.0525 4.3936 1.4586 14 6 8.8994 5.5485 2.1783 15 1 7.9769 5.7369 2.7073 16 6 9.9296 6.4777 2.2270 17 7 11.0537 6.2484 1.5818 18 14 9.7206 8.0535 3.2082 19 1 8.3746 8.0710 3.8355 20 1 10.7610 8.1198 4.2656 21 1 9.8594 9.2224 2.3029 22 6 10.2491 4.0128 0.6940 23 6 9.9542 2.6515 0.0295 24 1 10.3490 1.8342 0.6331 25 8 10.4897 2.6085 -1.2946 26 6 3.5754 -1.2068 -0.0053 27 6 2.1956 -1.1998 0.0007 28 6 1.4372 -2.5021 0.0013 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1334 0.0004 33 1 4.1116 2.1446 -0.0010 34 1 5.9436 2.0073 -0.0022 35 1 8.2565 0.6532 -0.8928 36 1 8.2572 0.6537 0.8872 37 1 7.0441 3.7553 1.2620 38 1 8.1094 2.6314 2.1585 39 1 11.7737 6.8975 1.6162 40 1 10.4542 4.7618 -0.0709 41 1 11.1042 3.9234 1.3638 42 1 11.4559 2.6320 -1.3290 43 1 4.1119 -2.1441 -0.0094 44 1 1.2542 -2.8164 -1.0263 45 1 2.0234 -3.2637 0.5154 46 1 0.4853 -2.3679 0.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958640292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = -67.425133 kcal Electronic energy + Delta-G solvation = -26116.045640 eV Core-core repulsion = 22390.776236 eV Total energy + Delta-G solvation = -3725.269404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38474 -40.15142 -39.47039 -36.67294 -36.17827 -34.60162 -33.86564 -33.06122 -31.45925 -29.43629 -28.68218 -27.84374 -26.94955 -25.16567 -23.36188 -22.90488 -22.19536 -21.53124 -20.75859 -19.03780 -18.65463 -18.13545 -17.38418 -17.00849 -16.48514 -16.23845 -16.15941 -15.85891 -15.73141 -15.31215 -15.12317 -14.69674 -14.59758 -14.42925 -14.03234 -13.93237 -13.72093 -13.57039 -13.42984 -13.22793 -13.11466 -12.79589 -12.76402 -12.67203 -12.45802 -12.26527 -12.22741 -11.92801 -11.87798 -11.78980 -11.52219 -11.08130 -10.81818 -10.75078 -10.23341 -9.80118 -9.54285 -8.95195 -7.87525 -5.24163 -0.16558 0.38339 1.46463 1.47029 1.57423 1.79651 2.05886 2.47184 2.83199 3.21674 3.33055 3.54307 3.58702 3.74896 3.80587 3.87366 3.93227 4.03962 4.12079 4.25153 4.30057 4.37922 4.42643 4.57318 4.63641 4.72201 4.73753 4.81255 4.83314 4.85299 4.92925 4.95684 4.99448 5.18815 5.22806 5.31084 5.31429 5.37996 5.41605 5.41854 5.47308 5.65110 5.69906 5.97956 6.15127 6.45084 6.87196 7.05843 7.11032 7.72431 8.35915 9.22914 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002695 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.989112 B =10385.843063 C =11756.543584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.090 4.090 5 C -0.157 4.157 6 C 0.555 3.445 7 O -0.583 6.583 8 N -0.711 5.711 9 C 0.147 3.853 10 C -0.090 4.090 11 H 0.087 0.913 12 C 0.140 3.860 13 N -0.625 5.625 14 C -0.241 4.241 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.293 1.293 22 C 0.161 3.839 23 C 0.097 3.903 24 H 0.075 0.925 25 O -0.569 6.569 26 C -0.074 4.074 27 C -0.104 4.104 28 C -0.116 4.116 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.247 0.753 40 H 0.020 0.980 41 H 0.013 0.987 42 H 0.393 0.607 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 -13.712 -4.653 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.345 3.655 7 O -0.464 6.464 8 N -0.363 5.363 9 C 0.023 3.977 10 C -0.110 4.110 11 H 0.106 0.894 12 C 0.015 3.985 13 N -0.352 5.352 14 C -0.370 4.370 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.035 3.965 23 C 0.036 3.964 24 H 0.093 0.907 25 O -0.376 6.376 26 C -0.093 4.093 27 C -0.104 4.104 28 C -0.172 4.172 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.032 0.968 42 H 0.243 0.757 43 H 0.141 0.859 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.800 -14.281 -4.754 25.675 hybrid contribution 1.362 1.506 0.650 2.132 sum -19.437 -12.776 -4.104 23.619 Atomic orbital electron populations 1.21012 0.88664 1.04332 1.03661 1.20400 0.97968 0.92127 0.95858 1.21327 0.93407 0.99078 1.00708 1.21514 0.95394 0.96783 0.97145 1.19850 0.91388 0.95718 1.09001 1.18670 0.88135 0.83315 0.75409 1.90725 1.70926 1.32507 1.52263 1.45839 1.07325 1.08854 1.74238 1.21135 0.79245 0.95179 1.02170 1.22414 0.94369 0.95024 0.99143 0.89441 1.21765 0.93267 0.89612 0.93900 1.44614 1.13629 1.19073 1.57853 1.19534 1.00224 0.94489 1.22713 0.89399 1.25689 0.96179 1.02259 1.01962 1.70172 1.05817 1.36563 1.47581 0.84985 0.77775 0.78931 0.77496 1.18671 1.22079 1.22020 1.21595 0.89117 0.92329 0.93446 1.22888 0.93358 0.96487 0.83650 0.90722 1.86393 1.27410 1.97005 1.26826 1.21203 0.94225 0.97206 0.96688 1.20033 0.92616 0.96905 1.00829 1.20927 1.00444 0.92482 1.03386 0.89638 0.89775 0.90179 0.82881 0.84150 0.75098 0.91222 0.91561 0.92377 0.95312 0.94392 0.96165 0.96838 0.75714 0.85895 0.90079 0.91457 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.60 71.24 0.68 -0.29 16 2 C -0.06 -0.94 5.89 -19.81 -0.12 -1.05 16 3 C -0.13 -1.98 9.68 22.23 0.22 -1.76 16 4 C -0.09 -1.72 9.54 22.52 0.21 -1.50 16 5 C -0.16 -3.84 5.87 -20.09 -0.12 -3.95 16 6 C 0.56 16.49 7.77 86.79 0.67 17.16 16 7 O -0.58 -21.43 16.35 -3.88 -0.06 -21.49 16 8 N -0.71 -18.96 5.36 -465.96 -2.50 -21.45 16 9 C 0.15 4.36 5.12 86.38 0.44 4.80 16 10 C -0.09 -3.02 2.83 -9.40 -0.03 -3.04 16 11 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 12 C 0.14 5.36 6.41 86.86 0.56 5.92 16 13 N -0.62 -31.33 3.39 -692.00 -2.35 -33.68 16 14 C -0.24 -13.19 10.28 84.04 0.86 -12.33 16 15 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 16 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 17 N -0.95 -56.77 10.31 21.65 0.22 -56.54 16 18 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 C 0.16 7.83 5.15 86.73 0.45 8.27 16 23 C 0.10 3.56 3.80 31.78 0.12 3.68 16 24 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 25 O -0.57 -19.36 13.39 -148.98 -1.99 -21.35 16 26 C -0.07 -1.71 9.25 22.53 0.21 -1.50 16 27 C -0.10 -1.80 5.87 -19.90 -0.12 -1.92 16 28 C -0.12 -1.32 9.59 71.24 0.68 -0.64 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.51 5.93 -2.39 -0.01 0.50 16 31 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.14 2.20 6.41 -2.91 -0.02 2.18 16 34 H 0.41 9.14 6.37 -92.71 -0.59 8.55 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.03 1.10 8.00 -2.38 -0.02 1.09 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.02 1.12 7.30 -2.39 -0.02 1.10 16 41 H 0.01 0.73 7.50 -2.39 -0.02 0.71 16 42 H 0.39 10.34 9.12 -74.05 -0.68 9.67 16 43 H 0.12 3.01 7.65 -2.91 -0.02 2.98 16 44 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 46 H 0.09 0.68 5.93 -2.39 -0.01 0.67 16 Total: -1.00 -74.12 373.22 0.28 -73.84 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.26 Total: 25.05 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.20 Total: 8.49 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.62 Total: -111.68 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -2.06 Total: -42.84 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.12 0.28 -73.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958640292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.411 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds