Wall clock time and date at job start Tue Mar 31 2020 12:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38376 * 119.85730 * 2 1 4 4 C 1.37932 * 120.14927 * 180.02562 * 3 2 1 5 5 C 1.39598 * 119.84814 * 359.97362 * 4 3 2 6 6 C 1.47845 * 120.14145 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99950 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00268 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00183 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64128 * 303.31902 * 10 9 8 12 12 C 1.54325 * 110.71718 * 66.45279 * 10 9 8 13 13 N 1.47018 * 107.27099 * 140.73458 * 12 10 9 14 14 C 1.36941 * 125.65333 * 181.01921 * 13 12 10 15 15 H 1.08003 * 119.99654 * 10.75826 * 14 13 12 16 16 C 1.38811 * 120.00604 * 190.74952 * 14 13 12 17 17 N 1.31621 * 119.99472 * 9.07328 * 16 14 13 18 18 Si 1.86802 * 120.00075 * 189.06828 * 16 14 13 19 19 H 1.48497 * 109.46995 * 84.99393 * 18 16 14 20 20 H 1.48497 * 109.47222 * 324.99067 * 18 16 14 21 21 H 1.48502 * 109.46692 * 204.99429 * 18 16 14 22 22 C 1.47428 * 108.70261 * 1.29115 * 13 12 10 23 23 C 1.55124 * 104.71992 * 335.55012 * 22 13 12 24 24 H 1.09000 * 110.90904 * 155.27861 * 23 22 13 25 25 O 1.42902 * 111.22428 * 279.17840 * 23 22 13 26 26 C 1.39555 * 119.71508 * 0.25278 * 5 4 3 27 27 C 1.37980 * 119.84728 * 359.49652 * 26 5 4 28 28 C 1.50702 * 119.92300 * 180.24926 * 27 26 5 29 29 H 1.09000 * 109.46849 * 90.00317 * 1 2 3 30 30 H 1.08997 * 109.46940 * 210.00444 * 1 2 3 31 31 H 1.09000 * 109.46708 * 330.00669 * 1 2 3 32 32 H 1.08007 * 119.92354 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.08007 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99502 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47316 * 59.99576 * 9 8 6 36 36 H 1.09004 * 109.47201 * 299.99957 * 9 8 6 37 37 H 1.09003 * 109.88667 * 21.31809 * 12 10 9 38 38 H 1.09003 * 110.01476 * 260.22446 * 12 10 9 39 39 H 0.96997 * 119.99379 * 180.02562 * 17 16 14 40 40 H 1.08991 * 110.36854 * 94.48382 * 22 13 12 41 41 H 1.08999 * 110.36513 * 216.80406 * 22 13 12 42 42 H 0.96699 * 114.00592 * 292.20101 * 25 23 22 43 43 H 1.08000 * 120.07558 * 179.74638 * 26 5 4 44 44 H 1.08997 * 109.47627 * 270.27548 * 28 27 26 45 45 H 1.09005 * 109.47500 * 30.27839 * 28 27 26 46 46 H 1.09004 * 109.47035 * 150.27366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.2001 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 -0.0017 7 8 6.3624 -1.0529 -0.0012 8 7 6.4286 1.1670 -0.0022 9 6 7.8936 1.1670 -0.0028 10 6 8.4037 2.6094 -0.0039 11 1 8.0033 3.1579 -0.8565 12 6 8.0425 3.3173 1.3190 13 7 9.1921 4.1532 1.6947 14 6 9.2808 4.9296 2.8192 15 1 8.5434 4.8321 3.6023 16 6 10.3185 5.8419 2.9529 17 7 11.1115 6.0906 1.9323 18 14 10.5894 6.7165 4.5812 19 1 11.4158 5.8616 5.4707 20 1 9.2778 6.9794 5.2260 21 1 11.2898 8.0037 4.3410 22 6 10.2311 4.0222 0.6570 23 6 9.9547 2.6474 -0.0062 24 1 10.3447 2.6209 -1.0237 25 8 10.4944 1.5788 0.7742 26 6 3.5754 -1.2069 -0.0053 27 6 2.1956 -1.1998 0.0005 28 6 1.4371 -2.5020 0.0010 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6524 2.1334 -0.0004 33 1 4.1118 2.1444 -0.0010 34 1 5.9436 2.0071 -0.0022 35 1 8.2566 0.6529 -0.8927 36 1 8.2573 0.6533 0.8872 37 1 7.8530 2.5768 2.0960 38 1 7.1601 3.9418 1.1792 39 1 11.8368 6.7278 2.0258 40 1 10.1394 4.8245 -0.0751 41 1 11.2226 4.0322 1.1096 42 1 11.4608 1.5613 0.8024 43 1 4.1118 -2.1443 -0.0095 44 1 1.2542 -2.8165 -1.0265 45 1 2.0233 -3.2638 0.5152 46 1 0.4852 -2.3678 0.5149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958640294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:04 Heat of formation + Delta-G solvation = -42.431610 kcal Electronic energy + Delta-G solvation = -26238.116734 eV Core-core repulsion = 22513.931130 eV Total energy + Delta-G solvation = -3724.185604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.37166 -38.98239 -38.11315 -34.94535 -34.54373 -33.70890 -32.36879 -32.09201 -29.79908 -28.14618 -27.74871 -26.86339 -25.37120 -23.67684 -22.32610 -22.11175 -20.57493 -19.87548 -19.50487 -17.68551 -17.30897 -16.40945 -16.25516 -15.46251 -15.23821 -15.13913 -14.86523 -14.59006 -14.53302 -14.14328 -13.87546 -13.72636 -13.34036 -13.13616 -13.08128 -12.85935 -12.69381 -12.37872 -12.27227 -12.00324 -11.84335 -11.56469 -11.47170 -11.20907 -11.12869 -10.79770 -10.67261 -10.45076 -10.25616 -10.06330 -9.84823 -9.75404 -9.14867 -9.06771 -8.96573 -8.73537 -8.63505 -6.81742 -5.78335 -3.10195 0.68820 1.14220 2.81400 3.24550 3.38726 3.44144 3.45132 3.71717 4.45602 4.46838 4.49878 4.62306 4.70585 4.79337 4.84490 5.01531 5.11588 5.18228 5.25506 5.30580 5.35215 5.38623 5.46610 5.47385 5.49810 5.53584 5.61567 5.80439 5.86961 5.87850 6.03170 6.09595 6.11179 6.18238 6.32649 6.35411 6.41530 6.51787 6.63795 6.70564 6.85360 7.30505 7.43877 7.59239 7.70931 8.17476 8.27409 8.30737 9.15794 9.77787 10.44736 11.35065 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.002643 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.185144 B =10591.737636 C =11590.183322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.087 4.087 5 C -0.132 4.132 6 C 0.555 3.445 7 O -0.541 6.541 8 N -0.721 5.721 9 C 0.140 3.860 10 C -0.106 4.106 11 H 0.086 0.914 12 C 0.144 3.856 13 N -0.596 5.596 14 C -0.225 4.225 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.149 3.851 23 C 0.081 3.919 24 H 0.056 0.944 25 O -0.557 6.557 26 C -0.058 4.058 27 C -0.098 4.098 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.374 0.626 43 H 0.135 0.865 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 -11.984 -7.844 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.342 3.658 7 O -0.420 6.420 8 N -0.372 5.372 9 C 0.017 3.983 10 C -0.125 4.125 11 H 0.105 0.895 12 C 0.018 3.982 13 N -0.322 5.322 14 C -0.353 4.353 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.023 3.977 23 C 0.020 3.980 24 H 0.074 0.926 25 O -0.362 6.362 26 C -0.077 4.077 27 C -0.098 4.098 28 C -0.173 4.173 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.221 0.779 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.917 -12.680 -7.664 23.249 hybrid contribution 0.651 1.340 0.716 1.652 sum -17.266 -11.341 -6.949 21.795 Atomic orbital electron populations 1.20924 0.91055 1.03149 1.02577 1.19968 0.96200 0.92632 0.97869 1.20967 0.93852 0.97744 1.01645 1.21330 0.94540 0.97152 0.97544 1.19982 0.93030 0.94382 1.06145 1.18252 0.86968 0.83969 0.76603 1.90762 1.69909 1.31196 1.50129 1.46035 1.08301 1.08272 1.74602 1.21250 0.77394 0.96694 1.02960 1.22493 0.95426 0.94793 0.99822 0.89546 1.21316 0.91297 0.92956 0.92599 1.44312 1.12624 1.51703 1.23597 1.19018 1.09953 1.12702 0.93659 0.90678 1.24806 0.99193 0.98633 0.97821 1.69923 1.20634 1.37701 1.28702 0.86132 0.77881 0.78693 0.83039 1.21505 1.20693 1.21724 1.22105 0.94891 0.89975 0.90729 1.23256 0.91982 0.89664 0.93088 0.92575 1.86409 1.25150 1.50456 1.74213 1.21139 0.93053 0.97865 0.95597 1.19725 0.93355 0.95205 1.01561 1.20862 1.00029 0.93903 1.02502 0.90841 0.90919 0.91326 0.85368 0.85431 0.76564 0.91702 0.90003 0.95363 0.96321 0.93697 0.94783 0.90834 0.77902 0.84696 0.91035 0.91328 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.60 36.01 0.35 -0.37 16 2 C -0.07 -0.59 5.89 -104.53 -0.62 -1.20 16 3 C -0.12 -1.14 9.68 -39.64 -0.38 -1.52 16 4 C -0.09 -0.91 9.54 -39.19 -0.37 -1.29 16 5 C -0.13 -1.69 5.87 -104.97 -0.62 -2.30 16 6 C 0.55 8.52 7.77 -12.33 -0.10 8.43 16 7 O -0.54 -10.15 16.35 5.32 0.09 -10.06 16 8 N -0.72 -10.23 5.35 -61.25 -0.33 -10.56 16 9 C 0.14 2.25 4.60 -4.04 -0.02 2.24 16 10 C -0.11 -1.80 2.93 -88.79 -0.26 -2.06 16 11 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 12 C 0.14 2.98 6.52 -3.07 -0.02 2.96 16 13 N -0.60 -15.11 3.39 -169.94 -0.58 -15.69 16 14 C -0.22 -6.28 10.24 -15.06 -0.15 -6.44 16 15 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 16 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 17 N -0.92 -26.66 10.68 55.49 0.59 -26.07 16 18 Si 0.91 22.08 29.56 -169.99 -5.03 17.06 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.15 3.45 5.17 -2.41 -0.01 3.44 16 23 C 0.08 1.47 4.17 -24.47 -0.10 1.37 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 O -0.56 -10.12 12.25 -35.23 -0.43 -10.55 16 26 C -0.06 -0.68 9.25 -39.18 -0.36 -1.04 16 27 C -0.10 -0.95 5.87 -104.68 -0.61 -1.56 16 28 C -0.12 -0.80 9.59 36.01 0.35 -0.45 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 5.93 -51.93 -0.31 0.06 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.13 1.13 6.41 -52.49 -0.34 0.79 16 34 H 0.40 4.78 6.36 -40.82 -0.26 4.52 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.54 7.45 -51.93 -0.39 1.15 16 37 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.07 1.90 6.95 -51.93 -0.36 1.54 16 42 H 0.37 5.44 9.12 45.56 0.42 5.85 16 43 H 0.14 1.62 7.65 -52.49 -0.40 1.22 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 46 H 0.07 0.39 5.93 -51.93 -0.31 0.08 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -34.10 371.85 -9.22 -43.33 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.11 Total: 7.09 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.03 Total: -0.14 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.31 Total: -52.32 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.34 Total: -20.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.10 -9.22 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958640294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.894 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds