Wall clock time and date at job start Tue Mar 31 2020 12:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38376 * 119.85730 * 2 1 4 4 C 1.37932 * 120.14927 * 180.02562 * 3 2 1 5 5 C 1.39598 * 119.84814 * 359.97362 * 4 3 2 6 6 C 1.47845 * 120.14145 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99950 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00268 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00183 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.64128 * 303.31902 * 10 9 8 12 12 C 1.54325 * 110.71718 * 66.45279 * 10 9 8 13 13 N 1.47018 * 107.27099 * 140.73458 * 12 10 9 14 14 C 1.36941 * 125.65333 * 181.01921 * 13 12 10 15 15 H 1.08003 * 119.99654 * 10.75826 * 14 13 12 16 16 C 1.38811 * 120.00604 * 190.74952 * 14 13 12 17 17 N 1.31621 * 119.99472 * 9.07328 * 16 14 13 18 18 Si 1.86802 * 120.00075 * 189.06828 * 16 14 13 19 19 H 1.48497 * 109.46995 * 84.99393 * 18 16 14 20 20 H 1.48497 * 109.47222 * 324.99067 * 18 16 14 21 21 H 1.48502 * 109.46692 * 204.99429 * 18 16 14 22 22 C 1.47428 * 108.70261 * 1.29115 * 13 12 10 23 23 C 1.55124 * 104.71992 * 335.55012 * 22 13 12 24 24 H 1.09000 * 110.90904 * 155.27861 * 23 22 13 25 25 O 1.42902 * 111.22428 * 279.17840 * 23 22 13 26 26 C 1.39555 * 119.71508 * 0.25278 * 5 4 3 27 27 C 1.37980 * 119.84728 * 359.49652 * 26 5 4 28 28 C 1.50702 * 119.92300 * 180.24926 * 27 26 5 29 29 H 1.09000 * 109.46849 * 90.00317 * 1 2 3 30 30 H 1.08997 * 109.46940 * 210.00444 * 1 2 3 31 31 H 1.09000 * 109.46708 * 330.00669 * 1 2 3 32 32 H 1.08007 * 119.92354 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.08007 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99502 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47316 * 59.99576 * 9 8 6 36 36 H 1.09004 * 109.47201 * 299.99957 * 9 8 6 37 37 H 1.09003 * 109.88667 * 21.31809 * 12 10 9 38 38 H 1.09003 * 110.01476 * 260.22446 * 12 10 9 39 39 H 0.96997 * 119.99379 * 180.02562 * 17 16 14 40 40 H 1.08991 * 110.36854 * 94.48382 * 22 13 12 41 41 H 1.08999 * 110.36513 * 216.80406 * 22 13 12 42 42 H 0.96699 * 114.00592 * 292.20101 * 25 23 22 43 43 H 1.08000 * 120.07558 * 179.74638 * 26 5 4 44 44 H 1.08997 * 109.47627 * 270.27548 * 28 27 26 45 45 H 1.09005 * 109.47500 * 30.27839 * 28 27 26 46 46 H 1.09004 * 109.47035 * 150.27366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.2001 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 -0.0017 7 8 6.3624 -1.0529 -0.0012 8 7 6.4286 1.1670 -0.0022 9 6 7.8936 1.1670 -0.0028 10 6 8.4037 2.6094 -0.0039 11 1 8.0033 3.1579 -0.8565 12 6 8.0425 3.3173 1.3190 13 7 9.1921 4.1532 1.6947 14 6 9.2808 4.9296 2.8192 15 1 8.5434 4.8321 3.6023 16 6 10.3185 5.8419 2.9529 17 7 11.1115 6.0906 1.9323 18 14 10.5894 6.7165 4.5812 19 1 11.4158 5.8616 5.4707 20 1 9.2778 6.9794 5.2260 21 1 11.2898 8.0037 4.3410 22 6 10.2311 4.0222 0.6570 23 6 9.9547 2.6474 -0.0062 24 1 10.3447 2.6209 -1.0237 25 8 10.4944 1.5788 0.7742 26 6 3.5754 -1.2069 -0.0053 27 6 2.1956 -1.1998 0.0005 28 6 1.4371 -2.5020 0.0010 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6524 2.1334 -0.0004 33 1 4.1118 2.1444 -0.0010 34 1 5.9436 2.0071 -0.0022 35 1 8.2566 0.6529 -0.8927 36 1 8.2573 0.6533 0.8872 37 1 7.8530 2.5768 2.0960 38 1 7.1601 3.9418 1.1792 39 1 11.8368 6.7278 2.0258 40 1 10.1394 4.8245 -0.0751 41 1 11.2226 4.0322 1.1096 42 1 11.4608 1.5613 0.8024 43 1 4.1118 -2.1443 -0.0095 44 1 1.2542 -2.8165 -1.0265 45 1 2.0233 -3.2638 0.5152 46 1 0.4852 -2.3678 0.5149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958640294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:03 Heat of formation + Delta-G solvation = -66.335980 kcal Electronic energy + Delta-G solvation = -26239.153305 eV Core-core repulsion = 22513.931130 eV Total energy + Delta-G solvation = -3725.222175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38271 -40.16753 -39.46817 -36.37360 -36.15706 -34.58105 -33.82903 -33.06486 -31.45049 -29.54948 -28.68741 -27.84519 -26.96074 -25.17566 -23.36972 -22.90699 -22.22650 -21.26932 -20.72129 -19.11790 -18.75433 -17.93955 -17.34608 -16.86255 -16.43478 -16.25020 -16.12702 -15.82456 -15.69521 -15.50499 -15.14325 -14.74987 -14.56594 -14.46186 -14.08325 -13.85771 -13.67542 -13.57233 -13.43294 -13.25745 -12.99296 -12.79849 -12.67970 -12.62415 -12.38886 -12.23830 -12.06897 -11.92261 -11.87091 -11.86040 -11.68331 -11.02073 -10.75469 -10.71041 -10.21216 -9.80463 -9.54398 -8.84488 -7.90156 -5.23688 -0.16714 0.37910 1.44600 1.47031 1.54531 1.79869 2.09350 2.47806 2.83011 3.23995 3.34985 3.57569 3.64881 3.79379 3.87779 3.91474 3.92682 3.97519 4.04297 4.24784 4.29863 4.40486 4.54996 4.61774 4.64267 4.73230 4.80461 4.82632 4.82947 4.90040 4.95393 4.98389 4.99651 5.18455 5.27895 5.30961 5.32263 5.37674 5.41560 5.42867 5.47415 5.64670 5.64805 5.97721 6.18221 6.46728 6.93817 7.07861 7.13205 7.74500 8.40285 9.21335 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.002643 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.185144 B =10591.737636 C =11590.183322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.157 4.157 6 C 0.553 3.447 7 O -0.585 6.585 8 N -0.712 5.712 9 C 0.155 3.845 10 C -0.091 4.091 11 H 0.115 0.885 12 C 0.142 3.858 13 N -0.619 5.619 14 C -0.243 4.243 15 H 0.073 0.927 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.975 3.025 19 H -0.288 1.288 20 H -0.270 1.270 21 H -0.292 1.292 22 C 0.152 3.848 23 C 0.093 3.907 24 H 0.093 0.907 25 O -0.569 6.569 26 C -0.075 4.075 27 C -0.104 4.104 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.014 0.986 38 H 0.031 0.969 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.040 0.960 42 H 0.389 0.611 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.467 -11.876 -8.379 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.342 3.658 7 O -0.466 6.466 8 N -0.364 5.364 9 C 0.031 3.969 10 C -0.110 4.110 11 H 0.133 0.867 12 C 0.017 3.983 13 N -0.346 5.346 14 C -0.372 4.372 15 H 0.091 0.909 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.803 3.197 19 H -0.215 1.215 20 H -0.195 1.195 21 H -0.218 1.218 22 C 0.027 3.973 23 C 0.032 3.968 24 H 0.111 0.889 25 O -0.376 6.376 26 C -0.094 4.094 27 C -0.104 4.104 28 C -0.172 4.172 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.058 0.942 42 H 0.238 0.762 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.534 -12.569 -8.204 25.435 hybrid contribution 1.375 1.282 0.898 2.084 sum -19.159 -11.287 -7.306 23.406 Atomic orbital electron populations 1.21012 0.88603 1.04317 1.03703 1.20404 0.97996 0.92104 0.95856 1.21331 0.93359 0.99099 1.00656 1.21515 0.95407 0.96732 0.97155 1.19863 0.91347 0.95789 1.08976 1.18715 0.88186 0.83393 0.75465 1.90728 1.71000 1.32622 1.52286 1.45899 1.07555 1.08755 1.74156 1.20941 0.78472 0.95628 1.01877 1.22440 0.94716 0.95070 0.98757 0.86719 1.21424 0.90426 0.92359 0.94065 1.44616 1.14717 1.51743 1.23478 1.19333 1.10004 1.13059 0.94775 0.90902 1.25581 0.99160 0.99722 1.00929 1.70102 1.20919 1.38170 1.30285 0.85150 0.77955 0.77280 0.79286 1.21489 1.19543 1.21790 1.21980 0.92944 0.92517 0.89882 1.23154 0.92905 0.86654 0.94041 0.88938 1.86396 1.26752 1.49962 1.74526 1.21200 0.94275 0.97186 0.96779 1.20030 0.92555 0.96959 1.00831 1.20929 1.00426 0.92463 1.03419 0.89541 0.89833 0.90161 0.82753 0.84063 0.75131 0.90980 0.92948 0.96789 0.95086 0.94190 0.96801 0.94178 0.76202 0.86054 0.89989 0.91571 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.60 71.24 0.68 -0.30 16 2 C -0.06 -0.95 5.89 -19.81 -0.12 -1.07 16 3 C -0.13 -1.98 9.68 22.23 0.22 -1.77 16 4 C -0.09 -1.74 9.54 22.53 0.21 -1.53 16 5 C -0.16 -3.97 5.87 -20.09 -0.12 -4.09 16 6 C 0.55 17.20 7.77 86.79 0.67 17.88 16 7 O -0.58 -22.68 16.35 -3.90 -0.06 -22.74 16 8 N -0.71 -19.75 5.35 -465.96 -2.49 -22.24 16 9 C 0.15 4.86 4.60 86.38 0.40 5.26 16 10 C -0.09 -2.95 2.93 -9.61 -0.03 -2.97 16 11 H 0.11 3.13 8.14 -2.39 -0.02 3.12 16 12 C 0.14 5.82 6.52 86.73 0.57 6.38 16 13 N -0.62 -31.71 3.39 -691.56 -2.35 -34.06 16 14 C -0.24 -13.73 10.24 84.03 0.86 -12.87 16 15 H 0.07 4.03 7.85 -2.91 -0.02 4.01 16 16 C -0.06 -3.42 5.40 84.86 0.46 -2.96 16 17 N -0.95 -55.82 10.68 21.65 0.23 -55.59 16 18 Si 0.97 45.80 29.56 68.60 2.03 47.83 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 C 0.15 7.16 5.17 86.93 0.45 7.61 16 23 C 0.09 3.27 4.17 32.06 0.13 3.41 16 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 25 O -0.57 -20.35 12.25 -148.98 -1.82 -22.18 16 26 C -0.08 -1.80 9.25 22.53 0.21 -1.59 16 27 C -0.10 -1.85 5.87 -19.90 -0.12 -1.97 16 28 C -0.12 -1.38 9.59 71.24 0.68 -0.70 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.53 5.93 -2.39 -0.01 0.51 16 31 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.14 2.22 6.41 -2.91 -0.02 2.20 16 34 H 0.41 9.26 6.36 -92.71 -0.59 8.67 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.99 7.45 -2.39 -0.02 1.97 16 37 H 0.01 0.61 7.77 -2.39 -0.02 0.60 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 41 H 0.04 2.13 6.95 -2.39 -0.02 2.11 16 42 H 0.39 11.12 9.12 -74.06 -0.68 10.44 16 43 H 0.12 3.11 7.65 -2.91 -0.02 3.08 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 46 H 0.09 0.72 5.93 -2.38 -0.01 0.71 16 Total: -1.00 -75.98 371.85 0.44 -75.54 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.26 Total: 24.74 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.16 Total: 8.71 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -4.61 Total: -111.89 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.89 Total: -44.92 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.98 0.44 -75.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958640294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.202 kcal (2) G-P(sol) polarization free energy of solvation -75.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds